Anne Kupczok

Bollback Group

10 Publications

Mark all

[10]
2014 | Published | Journal Article | IST-REx-ID: 2042 | OA
Kupczok A, Bollback JP. Motif depletion in bacteriophages infecting hosts with CRISPR systems. BMC Genomics. 2014;15(1). doi:10.1186/1471-2164-15-663
[Published Version] View | Files available | DOI
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2410 | OA
Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome Announcements. 2013;1(3). doi:10.1128/genomeA.00216-13
[Published Version] View | Files available | DOI
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2412 | OA
Kupczok A, Bollback JP. Probabilistic models for CRISPR spacer content evolution . BMC Evolutionary Biology. 2013;13(1):54-54. doi:10.1186/1471-2148-13-54
[Published Version] View | Files available | DOI
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2411 | OA
Ebersberger I, De Matos Simoes R, Kupczok A, et al. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 2012;29(5):1319-1334. doi:10.1093/molbev/msr285
[Published Version] View | Files available | DOI
 
[6]
2011 | Published | Journal Article | IST-REx-ID: 3370 | OA
Kupczok A. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 2011;60(2):218-225. doi:10.1093/sysbio/syq086
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 3387 | OA
Kupczok A. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 2011;11(205). doi:10.1186/1471-2148-11-205
[Published Version] View | Files available | DOI
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 2409 | OA
Kupczok A, Schmidt H, Von Haeseler A. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets. Algorithms for Molecular Biology. 2010;5(1). doi:10.1186/1748-7188-5-37
[Published Version] View | Files available | DOI
 
[3]
2009 | Published | Journal Article | IST-REx-ID: 3768
Kupczok A, Von Haeseler A. Comment on “{A} congruence index for testing topological similarity between trees”. Bioinformatics. 2009;25(1):147-149. doi:4199
View | DOI
 
[2]
2008 | Published | Journal Article | IST-REx-ID: 3769
Kupczok A, Von Haeseler A, Klaere S. An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees. Journal of Computational Biology. 2008;15(6):577-591. doi:4200
View | DOI
 
[1]
2006 | Published | Journal Article | IST-REx-ID: 3767
Kupczok A, Dittrich P. Determinants of simulated RNA evolution. Journal of Theoretical Biology. 2006;238(3):726-735. doi:10.1016/j.jtbi.2005.06.019
View | DOI
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: AMA

Export / Embed

Grants


10 Publications

Mark all

[10]
2014 | Published | Journal Article | IST-REx-ID: 2042 | OA
Kupczok A, Bollback JP. Motif depletion in bacteriophages infecting hosts with CRISPR systems. BMC Genomics. 2014;15(1). doi:10.1186/1471-2164-15-663
[Published Version] View | Files available | DOI
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2410 | OA
Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome Announcements. 2013;1(3). doi:10.1128/genomeA.00216-13
[Published Version] View | Files available | DOI
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2412 | OA
Kupczok A, Bollback JP. Probabilistic models for CRISPR spacer content evolution . BMC Evolutionary Biology. 2013;13(1):54-54. doi:10.1186/1471-2148-13-54
[Published Version] View | Files available | DOI
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2411 | OA
Ebersberger I, De Matos Simoes R, Kupczok A, et al. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 2012;29(5):1319-1334. doi:10.1093/molbev/msr285
[Published Version] View | Files available | DOI
 
[6]
2011 | Published | Journal Article | IST-REx-ID: 3370 | OA
Kupczok A. Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. 2011;60(2):218-225. doi:10.1093/sysbio/syq086
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 3387 | OA
Kupczok A. Split based computation of majority rule supertrees. BMC Evolutionary Biology. 2011;11(205). doi:10.1186/1471-2148-11-205
[Published Version] View | Files available | DOI
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 2409 | OA
Kupczok A, Schmidt H, Von Haeseler A. Accuracy of phylogeny reconstruction methods combining overlapping gene data sets. Algorithms for Molecular Biology. 2010;5(1). doi:10.1186/1748-7188-5-37
[Published Version] View | Files available | DOI
 
[3]
2009 | Published | Journal Article | IST-REx-ID: 3768
Kupczok A, Von Haeseler A. Comment on “{A} congruence index for testing topological similarity between trees”. Bioinformatics. 2009;25(1):147-149. doi:4199
View | DOI
 
[2]
2008 | Published | Journal Article | IST-REx-ID: 3769
Kupczok A, Von Haeseler A, Klaere S. An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees. Journal of Computational Biology. 2008;15(6):577-591. doi:4200
View | DOI
 
[1]
2006 | Published | Journal Article | IST-REx-ID: 3767
Kupczok A, Dittrich P. Determinants of simulated RNA evolution. Journal of Theoretical Biology. 2006;238(3):726-735. doi:10.1016/j.jtbi.2005.06.019
View | DOI
 
Marked Publication(s)

Search

Filter Publications

Display / Sort

Citation Style: AMA

Export / Embed