Anne Kupczok
Bollback Group
10 Publications
2014 | Journal Article | IST-REx-ID: 2042 | 
Kupczok, A., & Bollback, J. P. (2014). Motif depletion in bacteriophages infecting hosts with CRISPR systems. BMC Genomics. BioMed Central. https://doi.org/10.1186/1471-2164-15-663
[Published Version]
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| DOI
2013 | Journal Article | IST-REx-ID: 2412 |
Kupczok, A., & Bollback, J. P. (2013). Probabilistic models for CRISPR spacer content evolution . BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-13-54
[Published Version]
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| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2410 |
Fernandes Redondo, R. A., Kupczok, A., Stift, G., & Bollback, J. P. (2013). Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome Announcements. American Society for Microbiology. https://doi.org/10.1128/genomeA.00216-13
[Published Version]
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| DOI
2012 | Journal Article | IST-REx-ID: 2411 |
Ebersberger, I., De Matos Simoes, R., Kupczok, A., Gube, M., Kothe, E., Voigt, K., & Von Haeseler, A. (2012). A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msr285
[Published Version]
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| Files available
| DOI
2011 | Journal Article | IST-REx-ID: 3370 |
Kupczok, A. (2011). Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. Oxford University Press. https://doi.org/10.1093/sysbio/syq086
[Submitted Version]
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| Download Submitted Version (ext.)
2011 | Journal Article | IST-REx-ID: 3387 |
Kupczok, A. (2011). Split based computation of majority rule supertrees. BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-11-205
[Published Version]
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| Files available
| DOI
2010 | Journal Article | IST-REx-ID: 2409 |
Kupczok, A., Schmidt, H., & Von Haeseler, A. (2010). Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. BioMed Central. https://doi.org/10.1186/1748-7188-5-37
[Published Version]
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| Files available
| DOI
2009 | Journal Article | IST-REx-ID: 3768
Kupczok, A., & Von Haeseler, A. (2009). Comment on “{A} congruence index for testing topological similarity between trees”. Bioinformatics. Oxford University Press. https://doi.org/4199
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| DOI
2008 | Journal Article | IST-REx-ID: 3769
Kupczok, A., Von Haeseler, A., & Klaere, S. (2008). An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees. Journal of Computational Biology. Mary Ann Liebert. https://doi.org/4200
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| DOI
2006 | Journal Article | IST-REx-ID: 3767
Kupczok, A., & Dittrich, P. (2006). Determinants of simulated RNA evolution. Journal of Theoretical Biology. Elsevier. https://doi.org/10.1016/j.jtbi.2005.06.019
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| DOI
10 Publications
2014 | Journal Article | IST-REx-ID: 2042 |
Kupczok, A., & Bollback, J. P. (2014). Motif depletion in bacteriophages infecting hosts with CRISPR systems. BMC Genomics. BioMed Central. https://doi.org/10.1186/1471-2164-15-663
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2412 |
Kupczok, A., & Bollback, J. P. (2013). Probabilistic models for CRISPR spacer content evolution . BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-13-54
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2410 |
Fernandes Redondo, R. A., Kupczok, A., Stift, G., & Bollback, J. P. (2013). Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis. Genome Announcements. American Society for Microbiology. https://doi.org/10.1128/genomeA.00216-13
[Published Version]
View
| Files available
| DOI
2012 | Journal Article | IST-REx-ID: 2411 |
Ebersberger, I., De Matos Simoes, R., Kupczok, A., Gube, M., Kothe, E., Voigt, K., & Von Haeseler, A. (2012). A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msr285
[Published Version]
View
| Files available
| DOI
2011 | Journal Article | IST-REx-ID: 3370 |
Kupczok, A. (2011). Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. Oxford University Press. https://doi.org/10.1093/sysbio/syq086
[Submitted Version]
View
| DOI
| Download Submitted Version (ext.)
2011 | Journal Article | IST-REx-ID: 3387 |
Kupczok, A. (2011). Split based computation of majority rule supertrees. BMC Evolutionary Biology. BioMed Central. https://doi.org/10.1186/1471-2148-11-205
[Published Version]
View
| Files available
| DOI
2010 | Journal Article | IST-REx-ID: 2409 |
Kupczok, A., Schmidt, H., & Von Haeseler, A. (2010). Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. BioMed Central. https://doi.org/10.1186/1748-7188-5-37
[Published Version]
View
| Files available
| DOI
2009 | Journal Article | IST-REx-ID: 3768
Kupczok, A., & Von Haeseler, A. (2009). Comment on “{A} congruence index for testing topological similarity between trees”. Bioinformatics. Oxford University Press. https://doi.org/4199
View
| DOI
2008 | Journal Article | IST-REx-ID: 3769
Kupczok, A., Von Haeseler, A., & Klaere, S. (2008). An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees. Journal of Computational Biology. Mary Ann Liebert. https://doi.org/4200
View
| DOI
2006 | Journal Article | IST-REx-ID: 3767
Kupczok, A., & Dittrich, P. (2006). Determinants of simulated RNA evolution. Journal of Theoretical Biology. Elsevier. https://doi.org/10.1016/j.jtbi.2005.06.019
View
| DOI