Anne Kupczok
Bollback Group
10 Publications
2014 | Journal Article | IST-REx-ID: 2042 | 
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
View
| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
2013 | Journal Article | IST-REx-ID: 2412 |
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
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| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
2013 | Journal Article | IST-REx-ID: 2410 |
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
View
| Files available
| DOI
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
2012 | Journal Article | IST-REx-ID: 2411 |
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
View
| Files available
| DOI
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
2011 | Journal Article | IST-REx-ID: 3370 |
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
View
| DOI
| Download Submitted Version (ext.)
A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3387 |
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
View
| Files available
| DOI
A. Kupczok, BMC Evolutionary Biology 11 (2011).
2010 | Journal Article | IST-REx-ID: 2409 |
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
View
| Files available
| DOI
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
2009 | Journal Article | IST-REx-ID: 3768
Comment on '{A} congruence index for testing topological similarity between trees'.
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
View
| DOI
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
2008 | Journal Article | IST-REx-ID: 3769
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
View
| DOI
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
2006 | Journal Article | IST-REx-ID: 3767
Determinants of simulated RNA evolution.
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
View
| DOI
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
10 Publications
2014 | Journal Article | IST-REx-ID: 2042 |
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
View
| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
2013 | Journal Article | IST-REx-ID: 2412 |
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
View
| Files available
| DOI
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
2013 | Journal Article | IST-REx-ID: 2410 |
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
View
| Files available
| DOI
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
2012 | Journal Article | IST-REx-ID: 2411 |
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
View
| Files available
| DOI
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
2011 | Journal Article | IST-REx-ID: 3370 |
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
View
| DOI
| Download Submitted Version (ext.)
A. Kupczok, Systematic Biology 60 (2011) 218–225.
2011 | Journal Article | IST-REx-ID: 3387 |
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
View
| Files available
| DOI
A. Kupczok, BMC Evolutionary Biology 11 (2011).
2010 | Journal Article | IST-REx-ID: 2409 |
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
View
| Files available
| DOI
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
2009 | Journal Article | IST-REx-ID: 3768
Comment on '{A} congruence index for testing topological similarity between trees'.
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
View
| DOI
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
2008 | Journal Article | IST-REx-ID: 3769
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
View
| DOI
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
2006 | Journal Article | IST-REx-ID: 3767
Determinants of simulated RNA evolution.
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
View
| DOI
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.