Anne Kupczok

Bollback Group

10 Publications

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[10]
2014 | Published | Journal Article | IST-REx-ID: 2042 | OA
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
[Published Version] View | Files available | DOI
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2410 | OA
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
[Published Version] View | Files available | DOI
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2412 | OA
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
[Published Version] View | Files available | DOI
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2411 | OA
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
[Published Version] View | Files available | DOI
 
[6]
2011 | Published | Journal Article | IST-REx-ID: 3370 | OA
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 3387 | OA
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
[Published Version] View | Files available | DOI
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 2409 | OA
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
[Published Version] View | Files available | DOI
 
[3]
2009 | Published | Journal Article | IST-REx-ID: 3768
Comment on '{A} congruence index for testing topological similarity between trees'.
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
View | DOI
 
[2]
2008 | Published | Journal Article | IST-REx-ID: 3769
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
View | DOI
 
[1]
2006 | Published | Journal Article | IST-REx-ID: 3767
Determinants of simulated RNA evolution.
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
View | DOI
 
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10 Publications

Mark all

[10]
2014 | Published | Journal Article | IST-REx-ID: 2042 | OA
Motif depletion in bacteriophages infecting hosts with CRISPR systems
A. Kupczok, J.P. Bollback, BMC Genomics 15 (2014).
[Published Version] View | Files available | DOI
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2410 | OA
Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis
R.A. Fernandes Redondo, A. Kupczok, G. Stift, J.P. Bollback, Genome Announcements 1 (2013).
[Published Version] View | Files available | DOI
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2412 | OA
Probabilistic models for CRISPR spacer content evolution
A. Kupczok, J.P. Bollback, BMC Evolutionary Biology 13 (2013) 54–54.
[Published Version] View | Files available | DOI
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2411 | OA
A consistent phylogenetic backbone for the fungi
I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.
[Published Version] View | Files available | DOI
 
[6]
2011 | Published | Journal Article | IST-REx-ID: 3370 | OA
Consequences of different null models on the tree shape bias of supertree methods
A. Kupczok, Systematic Biology 60 (2011) 218–225.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 3387 | OA
Split based computation of majority rule supertrees
A. Kupczok, BMC Evolutionary Biology 11 (2011).
[Published Version] View | Files available | DOI
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 2409 | OA
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A. Kupczok, H. Schmidt, A. Von Haeseler, Algorithms for Molecular Biology 5 (2010).
[Published Version] View | Files available | DOI
 
[3]
2009 | Published | Journal Article | IST-REx-ID: 3768
Comment on '{A} congruence index for testing topological similarity between trees'.
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
View | DOI
 
[2]
2008 | Published | Journal Article | IST-REx-ID: 3769
An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.
A. Kupczok, A. Von Haeseler, S. Klaere, Journal of Computational Biology 15 (2008) 577–591.
View | DOI
 
[1]
2006 | Published | Journal Article | IST-REx-ID: 3767
Determinants of simulated RNA evolution.
A. Kupczok, P. Dittrich, Journal of Theoretical Biology 238 (2006) 726–35.
View | DOI
 
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