Anne Kupczok

Bollback Group

10 Publications

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[10]
2014 | Published | Journal Article | IST-REx-ID: 2042 | OA
A. Kupczok and J. P. Bollback, “Motif depletion in bacteriophages infecting hosts with CRISPR systems,” BMC Genomics, vol. 15, no. 1. BioMed Central, 2014.
[Published Version] View | Files available | DOI
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2410 | OA
R. A. Fernandes Redondo, A. Kupczok, G. Stift, and J. P. Bollback, “Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis,” Genome Announcements, vol. 1, no. 3. American Society for Microbiology, 2013.
[Published Version] View | Files available | DOI
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2412 | OA
A. Kupczok and J. P. Bollback, “Probabilistic models for CRISPR spacer content evolution ,” BMC Evolutionary Biology, vol. 13, no. 1. BioMed Central, pp. 54–54, 2013.
[Published Version] View | Files available | DOI
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2411 | OA
I. Ebersberger et al., “A consistent phylogenetic backbone for the fungi,” Molecular Biology and Evolution, vol. 29, no. 5. Oxford University Press, pp. 1319–1334, 2012.
[Published Version] View | Files available | DOI
 
[6]
2011 | Published | Journal Article | IST-REx-ID: 3370 | OA
A. Kupczok, “Consequences of different null models on the tree shape bias of supertree methods,” Systematic Biology, vol. 60, no. 2. Oxford University Press, pp. 218–225, 2011.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 3387 | OA
A. Kupczok, “Split based computation of majority rule supertrees,” BMC Evolutionary Biology, vol. 11, no. 205. BioMed Central, 2011.
[Published Version] View | Files available | DOI
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 2409 | OA
A. Kupczok, H. Schmidt, and A. Von Haeseler, “Accuracy of phylogeny reconstruction methods combining overlapping gene data sets,” Algorithms for Molecular Biology, vol. 5, no. 1. BioMed Central, 2010.
[Published Version] View | Files available | DOI
 
[3]
2009 | Published | Journal Article | IST-REx-ID: 3768
A. Kupczok and A. Von Haeseler, “Comment on ‘{A} congruence index for testing topological similarity between trees’.,” Bioinformatics, vol. 25, no. 1. Oxford University Press, pp. 147–149, 2009.
View | DOI
 
[2]
2008 | Published | Journal Article | IST-REx-ID: 3769
A. Kupczok, A. Von Haeseler, and S. Klaere, “An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.,” Journal of Computational Biology, vol. 15, no. 6. Mary Ann Liebert, pp. 577–591, 2008.
View | DOI
 
[1]
2006 | Published | Journal Article | IST-REx-ID: 3767
A. Kupczok and P. Dittrich, “Determinants of simulated RNA evolution.,” Journal of Theoretical Biology, vol. 238, no. 3. Elsevier, pp. 726–35, 2006.
View | DOI
 
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10 Publications

Mark all

[10]
2014 | Published | Journal Article | IST-REx-ID: 2042 | OA
A. Kupczok and J. P. Bollback, “Motif depletion in bacteriophages infecting hosts with CRISPR systems,” BMC Genomics, vol. 15, no. 1. BioMed Central, 2014.
[Published Version] View | Files available | DOI
 
[9]
2013 | Published | Journal Article | IST-REx-ID: 2410 | OA
R. A. Fernandes Redondo, A. Kupczok, G. Stift, and J. P. Bollback, “Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis,” Genome Announcements, vol. 1, no. 3. American Society for Microbiology, 2013.
[Published Version] View | Files available | DOI
 
[8]
2013 | Published | Journal Article | IST-REx-ID: 2412 | OA
A. Kupczok and J. P. Bollback, “Probabilistic models for CRISPR spacer content evolution ,” BMC Evolutionary Biology, vol. 13, no. 1. BioMed Central, pp. 54–54, 2013.
[Published Version] View | Files available | DOI
 
[7]
2012 | Published | Journal Article | IST-REx-ID: 2411 | OA
I. Ebersberger et al., “A consistent phylogenetic backbone for the fungi,” Molecular Biology and Evolution, vol. 29, no. 5. Oxford University Press, pp. 1319–1334, 2012.
[Published Version] View | Files available | DOI
 
[6]
2011 | Published | Journal Article | IST-REx-ID: 3370 | OA
A. Kupczok, “Consequences of different null models on the tree shape bias of supertree methods,” Systematic Biology, vol. 60, no. 2. Oxford University Press, pp. 218–225, 2011.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
[5]
2011 | Published | Journal Article | IST-REx-ID: 3387 | OA
A. Kupczok, “Split based computation of majority rule supertrees,” BMC Evolutionary Biology, vol. 11, no. 205. BioMed Central, 2011.
[Published Version] View | Files available | DOI
 
[4]
2010 | Published | Journal Article | IST-REx-ID: 2409 | OA
A. Kupczok, H. Schmidt, and A. Von Haeseler, “Accuracy of phylogeny reconstruction methods combining overlapping gene data sets,” Algorithms for Molecular Biology, vol. 5, no. 1. BioMed Central, 2010.
[Published Version] View | Files available | DOI
 
[3]
2009 | Published | Journal Article | IST-REx-ID: 3768
A. Kupczok and A. Von Haeseler, “Comment on ‘{A} congruence index for testing topological similarity between trees’.,” Bioinformatics, vol. 25, no. 1. Oxford University Press, pp. 147–149, 2009.
View | DOI
 
[2]
2008 | Published | Journal Article | IST-REx-ID: 3769
A. Kupczok, A. Von Haeseler, and S. Klaere, “An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees.,” Journal of Computational Biology, vol. 15, no. 6. Mary Ann Liebert, pp. 577–591, 2008.
View | DOI
 
[1]
2006 | Published | Journal Article | IST-REx-ID: 3767
A. Kupczok and P. Dittrich, “Determinants of simulated RNA evolution.,” Journal of Theoretical Biology, vol. 238, no. 3. Elsevier, pp. 726–35, 2006.
View | DOI
 
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Citation Style: IEEE

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