Jonathan P Bollback
Bollback Group
37 Publications
2022 | Journal Article | IST-REx-ID: 10736 |
M. Lagator et al., “Predicting bacterial promoter function and evolution from random sequences,” eLife, vol. 11. eLife Sciences Publications, 2022.
[Published Version]
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| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Journal Article | IST-REx-ID: 7652 |
I. Tomanek et al., “Gene amplification as a form of population-level gene expression regulation,” Nature Ecology & Evolution, vol. 4, no. 4. Springer Nature, pp. 612–625, 2020.
[Submitted Version]
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| Files available
| DOI
| WoS
2018 | Journal Article | IST-REx-ID: 423 |
P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “CRISPR-based herd immunity can limit phage epidemics in bacterial populations,” eLife, vol. 7. eLife Sciences Publications, 2018.
[Published Version]
View
| Files available
| DOI
| WoS
2018 | Research Data Reference | IST-REx-ID: 9840 |
P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations.” Dryad, 2018.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2018 | Journal Article | IST-REx-ID: 67 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10. Nature Publishing Group, pp. 1633–1643, 2018.
[Submitted Version]
View
| Files available
| DOI
| WoS
2018 | Research Data | IST-REx-ID: 5585 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring.” Institute of Science and Technology Austria, 2018.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 570 |
M. Lagator, S. Sarikas, H. Acar, J. P. Bollback, and C. C. Guet, “Regulatory network structure determines patterns of intermolecular epistasis,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 1077 |
R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family,” Journal of the Royal Society Interface, vol. 14, no. 126. Royal Society of London, 2017.
[Published Version]
View
| Files available
| DOI
| WoS
2017 | Journal Article | IST-REx-ID: 954 |
M. Lagator, T. Paixao, N. H. Barton, J. P. Bollback, and C. C. Guet, “On the mechanistic nature of epistasis in a canonical cis-regulatory element,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version]
View
| Files available
| DOI
| WoS
2016 | Journal Article | IST-REx-ID: 1427 |
M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” Molecular Biology and Evolution, vol. 33, no. 3. Oxford University Press, pp. 761–769, 2016.
[Published Version]
View
| Files available
| DOI
2016 | Research Data Reference | IST-REx-ID: 9864 |
R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family.” The Royal Society, 2016.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2014 | Journal Article | IST-REx-ID: 2042 |
A. Kupczok and J. P. Bollback, “Motif depletion in bacteriophages infecting hosts with CRISPR systems,” BMC Genomics, vol. 15, no. 1. BioMed Central, 2014.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2412 |
A. Kupczok and J. P. Bollback, “Probabilistic models for CRISPR spacer content evolution ,” BMC Evolutionary Biology, vol. 13, no. 1. BioMed Central, pp. 54–54, 2013.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2410 |
R. A. Fernandes Redondo, A. Kupczok, G. Stift, and J. P. Bollback, “Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis,” Genome Announcements, vol. 1, no. 3. American Society for Microbiology, 2013.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 500 |
M. Ward, S. Lycett, D. Avila, J. P. Bollback, and A. Leigh Brown, “Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza,” BMC Evolutionary Biology, vol. 13, no. 1. BioMed Central, 2013.
[Published Version]
View
| Files available
| DOI
2008 | Journal Article | IST-REx-ID: 3435 |
J. P. Bollback, T. York, and R. Nielsen, “Estimation of 2Nes From Temporal Allele Frequency Data,” Genetics, vol. 179, no. 1. Genetics Society of America, pp. 497–502, 2008.
View
| DOI
| Download (ext.)
2007 | Journal Article | IST-REx-ID: 4354
E. Freyhult, J. P. Bollback, and P. Gardner, “Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA,” Genome Research, vol. 17, no. 1. Cold Spring Harbor Laboratory Press, pp. 117–25, 2007.
View
| DOI
| Download (ext.)
2006 | Journal Article | IST-REx-ID: 4352
J. Conn, J. Vineis, J. P. Bollback, D. Onyabe, R. Wilkerson, and M. Povoa, “Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil,” The American Journal of Tropical Medicine and Hygiene, vol. 74, no. 5. American Society of Tropical Medicine and Hygiene, pp. 798–806, 2006.
View
| Download (ext.)
2003 | Journal Article | IST-REx-ID: 4350
J. Harshman, C. Huddleston, J. P. Bollback, T. Parsons, and M. Braun, “True and false gharials: A nuclear gene phylogeny of crocodylia,” Systematic Biology, vol. 52, no. 3. Oxford University Press, pp. 386–402, 2003.
View
| DOI
| PubMed | Europe PMC
2003 | Journal Article | IST-REx-ID: 4348
J. Huelsenbeck, R. Nielsen, and J. P. Bollback, “Stochastic mapping of morphological characters,” Systematic Biology, vol. 52, no. 2. Oxford University Press, pp. 131–158, 2003.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4349
J. P. Bollback, “Bayesian model adequacy and choice in phylogenetics,” Molecular Biology and Evolution, vol. 19, no. 7. Oxford University Press, pp. 1171–80, 2002.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4347
J. Huelsenbeck, J. P. Bollback, and A. Levine, “Inferring the root of a phylogenetic tree,” Systematic Biology, vol. 51, no. 1. Oxford University Press, pp. 32–43, 2002.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 4229
J. P. Bollback and J. Huelsenbeck, “Phylogeny, genome evolution, and host specificity of single-stranded RNA bacteriophage (Family Leviviridae),” Journal of Molecular Evolution, vol. 52, no. 2. Springer, pp. 117–128, 2001.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3440
J. Huelsenbeck and J. P. Bollback, “Empirical and hierarchical Bayesian estimation of ancestral states,” Systematic Biology, vol. 50, no. 3. Oxford University Press, pp. 351–366, 2001.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3438
J. Huelsenbeck, F. Ronquist, R. Nielsen, and J. P. Bollback, “Bayesian inference of phylogeny and its impact on evolutionary biology,” Science, vol. 294, no. 5550. American Association for the Advancement of Science, pp. 2310–2314, 2001.
View
| DOI
| PubMed | Europe PMC
37 Publications
2022 | Journal Article | IST-REx-ID: 10736 |
M. Lagator et al., “Predicting bacterial promoter function and evolution from random sequences,” eLife, vol. 11. eLife Sciences Publications, 2022.
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2020 | Journal Article | IST-REx-ID: 7652 |
I. Tomanek et al., “Gene amplification as a form of population-level gene expression regulation,” Nature Ecology & Evolution, vol. 4, no. 4. Springer Nature, pp. 612–625, 2020.
[Submitted Version]
View
| Files available
| DOI
| WoS
2018 | Journal Article | IST-REx-ID: 423 |
P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “CRISPR-based herd immunity can limit phage epidemics in bacterial populations,” eLife, vol. 7. eLife Sciences Publications, 2018.
[Published Version]
View
| Files available
| DOI
| WoS
2018 | Research Data Reference | IST-REx-ID: 9840 |
P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations.” Dryad, 2018.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2018 | Journal Article | IST-REx-ID: 67 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Evolutionary potential of transcription factors for gene regulatory rewiring,” Nature Ecology and Evolution, vol. 2, no. 10. Nature Publishing Group, pp. 1633–1643, 2018.
[Submitted Version]
View
| Files available
| DOI
| WoS
2018 | Research Data | IST-REx-ID: 5585 |
C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring.” Institute of Science and Technology Austria, 2018.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 570 |
M. Lagator, S. Sarikas, H. Acar, J. P. Bollback, and C. C. Guet, “Regulatory network structure determines patterns of intermolecular epistasis,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version]
View
| Files available
| DOI
2017 | Journal Article | IST-REx-ID: 1077 |
R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family,” Journal of the Royal Society Interface, vol. 14, no. 126. Royal Society of London, 2017.
[Published Version]
View
| Files available
| DOI
| WoS
2017 | Journal Article | IST-REx-ID: 954 |
M. Lagator, T. Paixao, N. H. Barton, J. P. Bollback, and C. C. Guet, “On the mechanistic nature of epistasis in a canonical cis-regulatory element,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version]
View
| Files available
| DOI
| WoS
2016 | Journal Article | IST-REx-ID: 1427 |
M. Lagator, C. Igler, A. Moreno, C. C. Guet, and J. P. Bollback, “Epistatic interactions in the arabinose cis-regulatory element,” Molecular Biology and Evolution, vol. 33, no. 3. Oxford University Press, pp. 761–769, 2016.
[Published Version]
View
| Files available
| DOI
2016 | Research Data Reference | IST-REx-ID: 9864 |
R. A. Fernandes Redondo, H. de Vladar, T. Włodarski, and J. P. Bollback, “Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family.” The Royal Society, 2016.
[Published Version]
View
| Files available
| DOI
| Download Published Version (ext.)
2014 | Journal Article | IST-REx-ID: 2042 |
A. Kupczok and J. P. Bollback, “Motif depletion in bacteriophages infecting hosts with CRISPR systems,” BMC Genomics, vol. 15, no. 1. BioMed Central, 2014.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2412 |
A. Kupczok and J. P. Bollback, “Probabilistic models for CRISPR spacer content evolution ,” BMC Evolutionary Biology, vol. 13, no. 1. BioMed Central, pp. 54–54, 2013.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 2410 |
R. A. Fernandes Redondo, A. Kupczok, G. Stift, and J. P. Bollback, “Complete genome sequence of the novel phage MG-B1 infecting bacillus weihenstephanensis,” Genome Announcements, vol. 1, no. 3. American Society for Microbiology, 2013.
[Published Version]
View
| Files available
| DOI
2013 | Journal Article | IST-REx-ID: 500 |
M. Ward, S. Lycett, D. Avila, J. P. Bollback, and A. Leigh Brown, “Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza,” BMC Evolutionary Biology, vol. 13, no. 1. BioMed Central, 2013.
[Published Version]
View
| Files available
| DOI
2008 | Journal Article | IST-REx-ID: 3435 |
J. P. Bollback, T. York, and R. Nielsen, “Estimation of 2Nes From Temporal Allele Frequency Data,” Genetics, vol. 179, no. 1. Genetics Society of America, pp. 497–502, 2008.
View
| DOI
| Download (ext.)
2007 | Journal Article | IST-REx-ID: 4354
E. Freyhult, J. P. Bollback, and P. Gardner, “Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA,” Genome Research, vol. 17, no. 1. Cold Spring Harbor Laboratory Press, pp. 117–25, 2007.
View
| DOI
| Download (ext.)
2006 | Journal Article | IST-REx-ID: 4352
J. Conn, J. Vineis, J. P. Bollback, D. Onyabe, R. Wilkerson, and M. Povoa, “Population structure of the malaria vector Anopheles darlingi in a malaria-endemic region of eastern Amazonian Brazil,” The American Journal of Tropical Medicine and Hygiene, vol. 74, no. 5. American Society of Tropical Medicine and Hygiene, pp. 798–806, 2006.
View
| Download (ext.)
2003 | Journal Article | IST-REx-ID: 4350
J. Harshman, C. Huddleston, J. P. Bollback, T. Parsons, and M. Braun, “True and false gharials: A nuclear gene phylogeny of crocodylia,” Systematic Biology, vol. 52, no. 3. Oxford University Press, pp. 386–402, 2003.
View
| DOI
| PubMed | Europe PMC
2003 | Journal Article | IST-REx-ID: 4348
J. Huelsenbeck, R. Nielsen, and J. P. Bollback, “Stochastic mapping of morphological characters,” Systematic Biology, vol. 52, no. 2. Oxford University Press, pp. 131–158, 2003.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4349
J. P. Bollback, “Bayesian model adequacy and choice in phylogenetics,” Molecular Biology and Evolution, vol. 19, no. 7. Oxford University Press, pp. 1171–80, 2002.
View
| DOI
| PubMed | Europe PMC
2002 | Journal Article | IST-REx-ID: 4347
J. Huelsenbeck, J. P. Bollback, and A. Levine, “Inferring the root of a phylogenetic tree,” Systematic Biology, vol. 51, no. 1. Oxford University Press, pp. 32–43, 2002.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 4229
J. P. Bollback and J. Huelsenbeck, “Phylogeny, genome evolution, and host specificity of single-stranded RNA bacteriophage (Family Leviviridae),” Journal of Molecular Evolution, vol. 52, no. 2. Springer, pp. 117–128, 2001.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3440
J. Huelsenbeck and J. P. Bollback, “Empirical and hierarchical Bayesian estimation of ancestral states,” Systematic Biology, vol. 50, no. 3. Oxford University Press, pp. 351–366, 2001.
View
| DOI
| PubMed | Europe PMC
2001 | Journal Article | IST-REx-ID: 3438
J. Huelsenbeck, F. Ronquist, R. Nielsen, and J. P. Bollback, “Bayesian inference of phylogeny and its impact on evolutionary biology,” Science, vol. 294, no. 5550. American Association for the Advancement of Science, pp. 2310–2314, 2001.
View
| DOI
| PubMed | Europe PMC