Carrie Bernecky

Bernecky Group

17 Publications

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[17]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19465
Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
View | DOI | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Tluckova, Katarina, Mechanism of mammalian transcriptional repression by noncoding RNA. Nature Structural & Molecular Biology 32. 2025
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
Ramadhin, Anisha R., Shun-Hsiao Lee, Di Zhou, Anita P Testa Salmazo, Camila Gonzalo-Hansen, Marjolein van Sluis, Cindy M.A. Blom, et al. “STK19 Drives Transcription-Coupled Repair by Stimulating Repair Complex Stability, RNA Pol II Ubiquitylation, and TFIIH Recruitment.” Molecular Cell. Elsevier, 2024. https://doi.org/10.1016/j.molcel.2024.10.030.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[14]
2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Tluckova, Katarina, Anita P Testa Salmazo, and Carrie Bernecky. “Mechanism of Mammalian Transcriptional Repression by Noncoding RNA.” Institute of Science and Technology Austria, n.d. https://doi.org/10.15479/AT:ISTA:14644.
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
Daiß, Julia L, Michael Pilsl, Kristina Straub, Andrea Bleckmann, Mona Höcherl, Florian B Heiss, Guillermo Abascal-Palacios, et al. “The Human RNA Polymerase I Structure Reveals an HMG-like Docking Domain Specific to Metazoans.” Life Science Alliance. Life Science Alliance, 2022. https://doi.org/10.26508/lsa.202201568.
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Engel, Christoph, Tobias Gubbey, Simon Neyer, Sarah Sainsbury, Christiane Oberthuer, Carlo Baejen, Carrie Bernecky, and Patrick Cramer. “Structural Basis of RNA Polymerase I Transcription Initiation.” Cell. Cell Press, 2017. https://doi.org/10.1016/j.cell.2017.03.003.
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Xu, Youwei, Carrie Bernecky, Chung Lee, Kerstin Maier, Björn Schwalb, Dimitri Tegunov, Jürgen Plitzko, Henning Urlaub, and Patrick Cramer. “Architecture of the RNA Polymerase II-Paf1C-TFIIS Transcription Elongation Complex.” Nature Communications. Nature Publishing Group, 2017. https://doi.org/10.1038/ncomms15741.
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Bernecky, Carrie, Jürgen Plitzko, and Patrick Cramer. “Structure of a Transcribing RNA Polymerase II-DSIF Complex Reveals a Multidentate DNA-RNA Clamp.” Nature Structural and Molecular Biology. Nature Publishing Group, 2017. https://doi.org/10.1038/nsmb.3465.
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Bernecky, Carrie, Franz Herzog, Wolfgang Baumeister, Jürgen Plitzko, and Patrick Cramer. “Structure of Transcribing Mammalian RNA Polymerase II.” Nature. Nature Publishing Group, 2016. https://doi.org/10.1038/nature16482.
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Sainsbury, Sarah, Carrie Bernecky, and Patrick Cramer. “Structural Basis of Transcription Initiation by RNA Polymerase II.” Nature Reviews Molecular Cell Biology. Nature Publishing Group, 2015. https://doi.org/10.1038/nrm3952.
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding RNA Directs Its Own Extension and Destruction.” EMBO Journal. Wiley-Blackwell, 2013. https://doi.org/10.1038/emboj.2013.36.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Bernecky, Carrie, and Dylan Taatjes. “Activator-Mediator Binding Stabilizes RNA Polymerase II Orientation within the Human Mediator-RNA Polymerase II-TFIIF Assembly.” Journal of Molecular Biology. Elsevier, 2012. https://doi.org/10.1016/j.jmb.2012.02.014.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Bernecky, Carrie, Patricia Grob, Christopher Ebmeier, Eva Nogales, and Dylan Taatjes. “Molecular Architecture of the Human Mediator-RNA Polymerase II-TFIIF Assembly.” PLoS Biology. Public Library of Science, 2011. https://doi.org/10.1371/journal.pbio.1000603.
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
Meyer, Krista, Shih Lin, Carrie Bernecky, Yuefeng Gao, and Dylan Taatjes. “P53 Activates Transcription by Directing Structural Shifts in Mediator.” Nature Structural and Molecular Biology. Nature Publishing Group, 2010. https://doi.org/10.1038/nsmb.1816.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
Knuesel, Matthew, Krista Meyer, Carrie Bernecky, and Dylan Taatjes. “The Human CDK8 Subcomplex Is a Molecular Switch That Controls Mediator Coactivator Function.” Genes and Development. Cold Spring Harbor Laboratory Press, 2009. https://doi.org/10.1101/gad.1767009.
View | DOI | Download None (ext.)
 
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17 Publications

Mark all

[17]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19465
Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
View | DOI | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Tluckova, Katarina, Mechanism of mammalian transcriptional repression by noncoding RNA. Nature Structural & Molecular Biology 32. 2025
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
Ramadhin, Anisha R., Shun-Hsiao Lee, Di Zhou, Anita P Testa Salmazo, Camila Gonzalo-Hansen, Marjolein van Sluis, Cindy M.A. Blom, et al. “STK19 Drives Transcription-Coupled Repair by Stimulating Repair Complex Stability, RNA Pol II Ubiquitylation, and TFIIH Recruitment.” Molecular Cell. Elsevier, 2024. https://doi.org/10.1016/j.molcel.2024.10.030.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[14]
2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Tluckova, Katarina, Anita P Testa Salmazo, and Carrie Bernecky. “Mechanism of Mammalian Transcriptional Repression by Noncoding RNA.” Institute of Science and Technology Austria, n.d. https://doi.org/10.15479/AT:ISTA:14644.
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
Daiß, Julia L, Michael Pilsl, Kristina Straub, Andrea Bleckmann, Mona Höcherl, Florian B Heiss, Guillermo Abascal-Palacios, et al. “The Human RNA Polymerase I Structure Reveals an HMG-like Docking Domain Specific to Metazoans.” Life Science Alliance. Life Science Alliance, 2022. https://doi.org/10.26508/lsa.202201568.
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Engel, Christoph, Tobias Gubbey, Simon Neyer, Sarah Sainsbury, Christiane Oberthuer, Carlo Baejen, Carrie Bernecky, and Patrick Cramer. “Structural Basis of RNA Polymerase I Transcription Initiation.” Cell. Cell Press, 2017. https://doi.org/10.1016/j.cell.2017.03.003.
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Xu, Youwei, Carrie Bernecky, Chung Lee, Kerstin Maier, Björn Schwalb, Dimitri Tegunov, Jürgen Plitzko, Henning Urlaub, and Patrick Cramer. “Architecture of the RNA Polymerase II-Paf1C-TFIIS Transcription Elongation Complex.” Nature Communications. Nature Publishing Group, 2017. https://doi.org/10.1038/ncomms15741.
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Bernecky, Carrie, Jürgen Plitzko, and Patrick Cramer. “Structure of a Transcribing RNA Polymerase II-DSIF Complex Reveals a Multidentate DNA-RNA Clamp.” Nature Structural and Molecular Biology. Nature Publishing Group, 2017. https://doi.org/10.1038/nsmb.3465.
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Bernecky, Carrie, Franz Herzog, Wolfgang Baumeister, Jürgen Plitzko, and Patrick Cramer. “Structure of Transcribing Mammalian RNA Polymerase II.” Nature. Nature Publishing Group, 2016. https://doi.org/10.1038/nature16482.
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Sainsbury, Sarah, Carrie Bernecky, and Patrick Cramer. “Structural Basis of Transcription Initiation by RNA Polymerase II.” Nature Reviews Molecular Cell Biology. Nature Publishing Group, 2015. https://doi.org/10.1038/nrm3952.
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Bernecky, Carrie, and Patrick Cramer. “Struggling to Let Go: A Non-Coding RNA Directs Its Own Extension and Destruction.” EMBO Journal. Wiley-Blackwell, 2013. https://doi.org/10.1038/emboj.2013.36.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Bernecky, Carrie, and Dylan Taatjes. “Activator-Mediator Binding Stabilizes RNA Polymerase II Orientation within the Human Mediator-RNA Polymerase II-TFIIF Assembly.” Journal of Molecular Biology. Elsevier, 2012. https://doi.org/10.1016/j.jmb.2012.02.014.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Bernecky, Carrie, Patricia Grob, Christopher Ebmeier, Eva Nogales, and Dylan Taatjes. “Molecular Architecture of the Human Mediator-RNA Polymerase II-TFIIF Assembly.” PLoS Biology. Public Library of Science, 2011. https://doi.org/10.1371/journal.pbio.1000603.
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
Meyer, Krista, Shih Lin, Carrie Bernecky, Yuefeng Gao, and Dylan Taatjes. “P53 Activates Transcription by Directing Structural Shifts in Mediator.” Nature Structural and Molecular Biology. Nature Publishing Group, 2010. https://doi.org/10.1038/nsmb.1816.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
Knuesel, Matthew, Krista Meyer, Carrie Bernecky, and Dylan Taatjes. “The Human CDK8 Subcomplex Is a Molecular Switch That Controls Mediator Coactivator Function.” Genes and Development. Cold Spring Harbor Laboratory Press, 2009. https://doi.org/10.1101/gad.1767009.
View | DOI | Download None (ext.)
 
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