Carrie Bernecky

Bernecky Group

17 Publications

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[17]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19465
Understanding the machinery that reads the genome
Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
View | DOI | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
Tluckova, Katarina, Mechanism of mammalian transcriptional repression by noncoding RNA. Nature Structural & Molecular Biology 32. 2025
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment
A.R. Ramadhin, S.-H. Lee, D. Zhou, A.P. Testa Salmazo, C. Gonzalo-Hansen, M. van Sluis, C.M.A. Blom, R.C. Janssens, A. Raams, D. Dekkers, K. Bezstarosti, D. Slade, W. Vermeulen, A. Pines, J.A.A. Demmers, C. Bernecky, T.K. Sixma, J.A. Marteijn, Molecular Cell 84 (2024) 4740–4757.e12.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[14]
2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, A.P. Testa Salmazo, C. Bernecky, (n.d.).
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Structural and functional basis of mammalian microRNA biogenesis by Dicer
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Structural basis of RNA polymerase I transcription initiation
C. Engel, T. Gubbey, S. Neyer, S. Sainsbury, C. Oberthuer, C. Baejen, C. Bernecky, P. Cramer, Cell 169 (2017) 120–131.e22.
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex
Y. Xu, C. Bernecky, C. Lee, K. Maier, B. Schwalb, D. Tegunov, J. Plitzko, H. Urlaub, P. Cramer, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp
C. Bernecky, J. Plitzko, P. Cramer, Nature Structural and Molecular Biology 24 (2017) 809–815.
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Structure of transcribing mammalian RNA polymerase II
C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, P. Cramer, Nature 529 (2016) 551–554.
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Structural basis of transcription initiation by RNA polymerase II
S. Sainsbury, C. Bernecky, P. Cramer, Nature Reviews Molecular Cell Biology 16 (2015) 129–143.
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Struggling to let go: A non-coding RNA directs its own extension and destruction
C. Bernecky, P. Cramer, EMBO Journal 32 (2013) 771–772.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, D. Taatjes, Journal of Molecular Biology 417 (2012) 387–394.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, D. Taatjes, PLoS Biology 9 (2011).
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
P53 activates transcription by directing structural shifts in Mediator
K. Meyer, S. Lin, C. Bernecky, Y. Gao, D. Taatjes, Nature Structural and Molecular Biology 17 (2010) 753–760.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function
M. Knuesel, K. Meyer, C. Bernecky, D. Taatjes, Genes and Development 23 (2009) 439–451.
View | DOI | Download None (ext.)
 
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17 Publications

Mark all

[17]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 19465
Understanding the machinery that reads the genome
Bernecky, Carrie A, Understanding the machinery that reads the genome. Nature Reviews Molecular Cell Biology. 2025
View | DOI | PubMed | Europe PMC
 
[16]
2025 | Published | Journal Article | IST-REx-ID: 18778 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
Tluckova, Katarina, Mechanism of mammalian transcriptional repression by noncoding RNA. Nature Structural & Molecular Biology 32. 2025
[Published Version] View | Files available | DOI | WoS
 
[15]
2024 | Published | Journal Article | IST-REx-ID: 18553 | OA
STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment
A.R. Ramadhin, S.-H. Lee, D. Zhou, A.P. Testa Salmazo, C. Gonzalo-Hansen, M. van Sluis, C.M.A. Blom, R.C. Janssens, A. Raams, D. Dekkers, K. Bezstarosti, D. Slade, W. Vermeulen, A. Pines, J.A.A. Demmers, C. Bernecky, T.K. Sixma, J.A. Marteijn, Molecular Cell 84 (2024) 4740–4757.e12.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[14]
2023 | Draft | Preprint | IST-REx-ID: 14644 | OA
Mechanism of mammalian transcriptional repression by noncoding RNA
K. Tluckova, A.P. Testa Salmazo, C. Bernecky, (n.d.).
[Submitted Version] View | Files available | DOI
 
[13]
2022 | Published | Journal Article | IST-REx-ID: 12051 | OA
The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
[Published Version] View | Files available | DOI | WoS
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12143 | OA
Structural and functional basis of mammalian microRNA biogenesis by Dicer
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O’Carroll D, Stefl R, Svoboda P. 2022. Structural and functional basis of mammalian microRNA biogenesis by Dicer. Molecular Cell. 82(21), 4064–4079.e13.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2021 | Published | Journal Article | IST-REx-ID: 10163 | OA
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
Appel L-M, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, Leeb M, Pavri R, Stark A, Akalin A, Stefl R, Bernecky C, Djinovic-Carugo K, Slade D. 2021. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12(1), 6078.
[Published Version] View | Files available | DOI | WoS
 
[10]
2017 | Published | Journal Article | IST-REx-ID: 600
Structural basis of RNA polymerase I transcription initiation
C. Engel, T. Gubbey, S. Neyer, S. Sainsbury, C. Oberthuer, C. Baejen, C. Bernecky, P. Cramer, Cell 169 (2017) 120–131.e22.
View | DOI
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 601 | OA
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex
Y. Xu, C. Bernecky, C. Lee, K. Maier, B. Schwalb, D. Tegunov, J. Plitzko, H. Urlaub, P. Cramer, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 603
Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp
C. Bernecky, J. Plitzko, P. Cramer, Nature Structural and Molecular Biology 24 (2017) 809–815.
View | DOI
 
[7]
2016 | Published | Journal Article | IST-REx-ID: 602
Structure of transcribing mammalian RNA polymerase II
C. Bernecky, F. Herzog, W. Baumeister, J. Plitzko, P. Cramer, Nature 529 (2016) 551–554.
View | DOI
 
[6]
2015 | Published | Journal Article | IST-REx-ID: 594
Structural basis of transcription initiation by RNA polymerase II
S. Sainsbury, C. Bernecky, P. Cramer, Nature Reviews Molecular Cell Biology 16 (2015) 129–143.
View | DOI
 
[5]
2013 | Published | Journal Article | IST-REx-ID: 595 | OA
Struggling to let go: A non-coding RNA directs its own extension and destruction
C. Bernecky, P. Cramer, EMBO Journal 32 (2013) 771–772.
View | DOI | Download None (ext.)
 
[4]
2012 | Published | Journal Article | IST-REx-ID: 596 | OA
Activator-mediator binding stabilizes RNA polymerase II orientation within the human mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, D. Taatjes, Journal of Molecular Biology 417 (2012) 387–394.
View | DOI | Download None (ext.)
 
[3]
2011 | Published | Journal Article | IST-REx-ID: 597
Molecular architecture of the human Mediator-RNA polymerase II-TFIIF assembly
C. Bernecky, P. Grob, C. Ebmeier, E. Nogales, D. Taatjes, PLoS Biology 9 (2011).
View | DOI
 
[2]
2010 | Published | Journal Article | IST-REx-ID: 598 | OA
P53 activates transcription by directing structural shifts in Mediator
K. Meyer, S. Lin, C. Bernecky, Y. Gao, D. Taatjes, Nature Structural and Molecular Biology 17 (2010) 753–760.
View | DOI | Download None (ext.)
 
[1]
2009 | Published | Journal Article | IST-REx-ID: 599 | OA
The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function
M. Knuesel, K. Meyer, C. Bernecky, D. Taatjes, Genes and Development 23 (2009) 439–451.
View | DOI | Download None (ext.)
 
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Citation Style: Default

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