Alicia K. Michael
Michael Group
16 Publications
2023 | Journal Article | IST-REx-ID: 15148 | 
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schübeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thomä NH. 2023. Cooperation between bHLH transcription factors and histones for DNA access. Nature. 619(7969), 385–393.
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2023 | Journal Article | IST-REx-ID: 15149 |
Isbel, L., Iskar, M., Durdu, S., Weiss, J., Grand, R. S., Hietter-Pfeiffer, E., … Schübeler, D. (2023). Readout of histone methylation by Trim24 locally restricts chromatin opening by p53. Nature Structural & Molecular Biology. Springer Nature. https://doi.org/10.1038/s41594-023-01021-8
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2021 | Journal Article | IST-REx-ID: 15150
Grand, R. S., Burger, L., Gräwe, C., Michael, A. K., Isbel, L., Hess, D., … Schübeler, D. (2021). BANP opens chromatin and activates CpG-island-regulated genes. Nature. Springer Nature. https://doi.org/10.1038/s41586-021-03689-8
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2021 | Journal Article | IST-REx-ID: 15151 |
Michael, A. K., & Thomä, N. H. (2021). Reading the chromatinized genome. Cell. Elsevier. https://doi.org/10.1016/j.cell.2021.05.029
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2020 | Journal Article | IST-REx-ID: 15153 |
Fribourgh, J. L., Srivastava, A., Sandate, C. R., Michael, A. K., Hsu, P. L., Rakers, C., … Partch, C. L. (2020). Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.55275
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2020 | Journal Article | IST-REx-ID: 15152
Michael, A. K., Grand, R. S., Isbel, L., Cavadini, S., Kozicka, Z., Kempf, G., … Thomä, N. H. (2020). Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science. American Association for the Advancement of Science . https://doi.org/10.1126/science.abb0074
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2019 | Preprint | IST-REx-ID: 15147 |
Fribourgh, J. L., Srivastava, A., Sandate, C. R., Michael, A. K., Hsu, P. L., Rakers, C., … Partch, C. L. (2019). Protein dynamics regulate distinct biochemical properties of cryptochromes in mammalian circadian rhythms. bioRxiv. https://doi.org/10.1101/740464
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2017 | Journal Article | IST-REx-ID: 15157 |
Michael, A. K., Fribourgh, J. L., Chelliah, Y., Sandate, C. R., Hura, G. L., Schneidman-Duhovny, D., … Partch, C. L. (2017). Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1. Proceedings of the National Academy of Sciences. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1615310114
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2017 | Journal Article | IST-REx-ID: 15158 |
Michael, A. K., Fribourgh, J. L., Van Gelder, R. N., & Partch, C. L. (2017). Animal cryptochromes: Divergent roles in light perception, circadian timekeeping and beyond. Photochemistry and Photobiology. Wiley. https://doi.org/10.1111/php.12677
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2017 | Journal Article | IST-REx-ID: 15154 |
Fong, J. C., Rogers, A., Michael, A. K., Parsley, N. C., Cornell, W.-C., Lin, Y.-C., … Yildiz, F. H. (2017). Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.26163
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2017 | Journal Article | IST-REx-ID: 15155 |
Gustafson, C. L., Parsley, N. C., Asimgil, H., Lee, H.-W., Ahlbach, C., Michael, A. K., … Partch, C. L. (2017). A slow conformational switch in the BMAL1 transactivation domain modulates circadian rhythms. Molecular Cell. Elsevier. https://doi.org/10.1016/j.molcel.2017.04.011
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2017 | Journal Article | IST-REx-ID: 15156
Tseng, R., Goularte, N. F., Chavan, A., Luu, J., Cohen, S. E., Chang, Y.-G., … Partch, C. L. (2017). Structural basis of the day-night transition in a bacterial circadian clock. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.aag2516
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2015 | Journal Article | IST-REx-ID: 15160 |
Michael, A. K., Harvey, S. L., Sammons, P. J., Anderson, A. P., Kopalle, H. M., Banham, A. H., & Partch, C. L. (2015). Cancer/Testis antigen PASD1 silences the circadian clock. Molecular Cell. Elsevier. https://doi.org/10.1016/j.molcel.2015.03.031
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2015 | Journal Article | IST-REx-ID: 15159
Michael, A. K., Asimgil, H., & Partch, C. L. (2015). Cytosolic BMAL1 moonlights as a translation factor. Trends in Biochemical Sciences. Elsevier. https://doi.org/10.1016/j.tibs.2015.07.006
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| DOI
2014 | Journal Article | IST-REx-ID: 15161 |
Guan, W., Michael, A. K., McIntosh, M. L., Koren-Selfridge, L., Scott, J. P., & Clark, T. B. (2014). Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. The Journal of Organic Chemistry. American Chemical Society. https://doi.org/10.1021/jo500773t
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2013 | Journal Article | IST-REx-ID: 15162
Woehrmann, M. H., Bray, W. M., Durbin, J. K., Nisam, S. C., Michael, A. K., Glassey, E., … Lokey, R. S. (2013). Large-scale cytological profiling for functional analysis of bioactive compounds. Molecular BioSystems. Royal Society of Chemistry. https://doi.org/10.1039/c3mb70245f
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| DOI
16 Publications
2023 | Journal Article | IST-REx-ID: 15148 |
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schübeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thomä NH. 2023. Cooperation between bHLH transcription factors and histones for DNA access. Nature. 619(7969), 385–393.
[Published Version]
View
| DOI
| Download Published Version (ext.)
2023 | Journal Article | IST-REx-ID: 15149 |
Isbel, L., Iskar, M., Durdu, S., Weiss, J., Grand, R. S., Hietter-Pfeiffer, E., … Schübeler, D. (2023). Readout of histone methylation by Trim24 locally restricts chromatin opening by p53. Nature Structural & Molecular Biology. Springer Nature. https://doi.org/10.1038/s41594-023-01021-8
[Published Version]
View
| DOI
| Download Published Version (ext.)
| PubMed | Europe PMC
2021 | Journal Article | IST-REx-ID: 15150
Grand, R. S., Burger, L., Gräwe, C., Michael, A. K., Isbel, L., Hess, D., … Schübeler, D. (2021). BANP opens chromatin and activates CpG-island-regulated genes. Nature. Springer Nature. https://doi.org/10.1038/s41586-021-03689-8
View
| DOI
2021 | Journal Article | IST-REx-ID: 15151 |
Michael, A. K., & Thomä, N. H. (2021). Reading the chromatinized genome. Cell. Elsevier. https://doi.org/10.1016/j.cell.2021.05.029
[Published Version]
View
| DOI
| Download Published Version (ext.)
2020 | Journal Article | IST-REx-ID: 15153 |
Fribourgh, J. L., Srivastava, A., Sandate, C. R., Michael, A. K., Hsu, P. L., Rakers, C., … Partch, C. L. (2020). Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.55275
[Published Version]
View
| DOI
| Download Published Version (ext.)
2020 | Journal Article | IST-REx-ID: 15152
Michael, A. K., Grand, R. S., Isbel, L., Cavadini, S., Kozicka, Z., Kempf, G., … Thomä, N. H. (2020). Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science. American Association for the Advancement of Science . https://doi.org/10.1126/science.abb0074
View
| DOI
2019 | Preprint | IST-REx-ID: 15147 |
Fribourgh, J. L., Srivastava, A., Sandate, C. R., Michael, A. K., Hsu, P. L., Rakers, C., … Partch, C. L. (2019). Protein dynamics regulate distinct biochemical properties of cryptochromes in mammalian circadian rhythms. bioRxiv. https://doi.org/10.1101/740464
View
| DOI
| Download None (ext.)
2017 | Journal Article | IST-REx-ID: 15157 |
Michael, A. K., Fribourgh, J. L., Chelliah, Y., Sandate, C. R., Hura, G. L., Schneidman-Duhovny, D., … Partch, C. L. (2017). Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1. Proceedings of the National Academy of Sciences. Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1615310114
[Published Version]
View
| DOI
| Download Published Version (ext.)
| PubMed | Europe PMC
2017 | Journal Article | IST-REx-ID: 15158 |
Michael, A. K., Fribourgh, J. L., Van Gelder, R. N., & Partch, C. L. (2017). Animal cryptochromes: Divergent roles in light perception, circadian timekeeping and beyond. Photochemistry and Photobiology. Wiley. https://doi.org/10.1111/php.12677
[Published Version]
View
| DOI
| Download Published Version (ext.)
2017 | Journal Article | IST-REx-ID: 15154 |
Fong, J. C., Rogers, A., Michael, A. K., Parsley, N. C., Cornell, W.-C., Lin, Y.-C., … Yildiz, F. H. (2017). Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms. ELife. eLife Sciences Publications. https://doi.org/10.7554/elife.26163
[Published Version]
View
| DOI
| Download Published Version (ext.)
| PubMed | Europe PMC
2017 | Journal Article | IST-REx-ID: 15155 |
Gustafson, C. L., Parsley, N. C., Asimgil, H., Lee, H.-W., Ahlbach, C., Michael, A. K., … Partch, C. L. (2017). A slow conformational switch in the BMAL1 transactivation domain modulates circadian rhythms. Molecular Cell. Elsevier. https://doi.org/10.1016/j.molcel.2017.04.011
[Published Version]
View
| DOI
| Download Published Version (ext.)
2017 | Journal Article | IST-REx-ID: 15156
Tseng, R., Goularte, N. F., Chavan, A., Luu, J., Cohen, S. E., Chang, Y.-G., … Partch, C. L. (2017). Structural basis of the day-night transition in a bacterial circadian clock. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.aag2516
View
| DOI
2015 | Journal Article | IST-REx-ID: 15160 |
Michael, A. K., Harvey, S. L., Sammons, P. J., Anderson, A. P., Kopalle, H. M., Banham, A. H., & Partch, C. L. (2015). Cancer/Testis antigen PASD1 silences the circadian clock. Molecular Cell. Elsevier. https://doi.org/10.1016/j.molcel.2015.03.031
[Published Version]
View
| DOI
| Download Published Version (ext.)
2015 | Journal Article | IST-REx-ID: 15159
Michael, A. K., Asimgil, H., & Partch, C. L. (2015). Cytosolic BMAL1 moonlights as a translation factor. Trends in Biochemical Sciences. Elsevier. https://doi.org/10.1016/j.tibs.2015.07.006
View
| DOI
2014 | Journal Article | IST-REx-ID: 15161 |
Guan, W., Michael, A. K., McIntosh, M. L., Koren-Selfridge, L., Scott, J. P., & Clark, T. B. (2014). Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. The Journal of Organic Chemistry. American Chemical Society. https://doi.org/10.1021/jo500773t
[Published Version]
View
| DOI
| Download Published Version (ext.)
2013 | Journal Article | IST-REx-ID: 15162
Woehrmann, M. H., Bray, W. M., Durbin, J. K., Nisam, S. C., Michael, A. K., Glassey, E., … Lokey, R. S. (2013). Large-scale cytological profiling for functional analysis of bioactive compounds. Molecular BioSystems. Royal Society of Chemistry. https://doi.org/10.1039/c3mb70245f
View
| DOI