Alicia K. Michael

19 Publications

Mark all

[19]
2025 | Published | Journal Article | IST-REx-ID: 20374 | OA | PlanS
D. Chakraborty et al., “Nucleosomes specify co-factor access to p53,” Molecular Cell, vol. 85, no. 15. Elsevier, p. 2919–2936.e12, 2025.
[Published Version] View | Files available | DOI
 
[18]
2025 | In Press | Journal Article | IST-REx-ID: 20935 | OA | PlanS
Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty S, Tagiltsev G, Michael AK, Van Dorst S, Waltz F, Mccafferty CL, Lamm L, Zufferey S, Van Der Stappen P, Van Den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JAG, Plitzko JM, Engel BD, Kotecha A. Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii. Molecular Cell.
[Published Version] View | DOI | Download Published Version (ext.)
 
[17]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 20924 | OA | PlanS
W. Kobayashi, A. K. Michael, S. Ruangroengkulrith, M. Kümmecke, and K. Tachibana, “Protocol for integrative analysis of transcription factor-nucleosome interactions using SeEN-seq and cryo-EM structure determination,” STAR Protocols, vol. 7. Elsevier, 2025.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2023 | Published | Journal Article | IST-REx-ID: 15148 | OA
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schübeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thomä NH. 2023. Cooperation between bHLH transcription factors and histones for DNA access. Nature. 619(7969), 385–393.
[Published Version] View | DOI | Download Published Version (ext.)
 
[15]
2023 | Published | Journal Article | IST-REx-ID: 15149 | OA
L. Isbel et al., “Readout of histone methylation by Trim24 locally restricts chromatin opening by p53,” Nature Structural & Molecular Biology, vol. 30, no. 7. Springer Nature, pp. 948–957, 2023.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[14]
2021 | Published | Journal Article | IST-REx-ID: 15150
R. S. Grand et al., “BANP opens chromatin and activates CpG-island-regulated genes,” Nature, vol. 596. Springer Nature, pp. 133–137, 2021.
View | DOI
 
[13]
2021 | Published | Journal Article | IST-REx-ID: 15151 | OA
A. K. Michael and N. H. Thomä, “Reading the chromatinized genome,” Cell, vol. 184, no. 14. Elsevier, pp. 3599–3611, 2021.
[Published Version] View | DOI | Download Published Version (ext.)
 
[12]
2020 | Published | Journal Article | IST-REx-ID: 15152
A. K. Michael et al., “Mechanisms of OCT4-SOX2 motif readout on nucleosomes,” Science, vol. 368, no. 6498. American Association for the Advancement of Science , pp. 1460–1465, 2020.
View | DOI
 
[11]
2020 | Published | Journal Article | IST-REx-ID: 15153 | OA
J. L. Fribourgh et al., “Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing,” eLife, vol. 9. eLife Sciences Publications, 2020.
[Published Version] View | DOI | Download Published Version (ext.)
 
[10]
2019 | Published | Preprint | IST-REx-ID: 15147 | OA
J. L. Fribourgh et al., “Protein dynamics regulate distinct biochemical properties of cryptochromes in mammalian circadian rhythms,” bioRxiv. 2019.
[Preprint] View | DOI | Download Preprint (ext.)
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 15154 | OA
J. C. Fong et al., “Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 15155 | OA
C. L. Gustafson et al., “A slow conformational switch in the BMAL1 transactivation domain modulates circadian rhythms,” Molecular Cell, vol. 66, no. 4. Elsevier, p. 447–457.e7, 2017.
[Published Version] View | DOI | Download Published Version (ext.)
 
[7]
2017 | Published | Journal Article | IST-REx-ID: 15156
R. Tseng et al., “Structural basis of the day-night transition in a bacterial circadian clock,” Science, vol. 355, no. 6330. American Association for the Advancement of Science, pp. 1174–1180, 2017.
View | DOI
 
[6]
2017 | Published | Journal Article | IST-REx-ID: 15157 | OA
A. K. Michael et al., “Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1,” Proceedings of the National Academy of Sciences, vol. 114, no. 7. Proceedings of the National Academy of Sciences, pp. 1560–1565, 2017.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[5]
2017 | Published | Journal Article | IST-REx-ID: 15158 | OA
A. K. Michael, J. L. Fribourgh, R. N. Van Gelder, and C. L. Partch, “Animal cryptochromes: Divergent roles in light perception, circadian timekeeping and beyond,” Photochemistry and Photobiology, vol. 93, no. 1. Wiley, pp. 128–140, 2017.
[Published Version] View | DOI | Download Published Version (ext.)
 
[4]
2015 | Published | Journal Article | IST-REx-ID: 15159
A. K. Michael, H. Asimgil, and C. L. Partch, “Cytosolic BMAL1 moonlights as a translation factor,” Trends in Biochemical Sciences, vol. 40, no. 9. Elsevier, pp. 489–490, 2015.
View | DOI
 
[3]
2015 | Published | Journal Article | IST-REx-ID: 15160 | OA
A. K. Michael et al., “Cancer/Testis antigen PASD1 silences the circadian clock,” Molecular Cell, vol. 58, no. 5. Elsevier, pp. 743–754, 2015.
[Published Version] View | DOI | Download Published Version (ext.)
 
[2]
2014 | Published | Journal Article | IST-REx-ID: 15161 | OA
W. Guan, A. K. Michael, M. L. McIntosh, L. Koren-Selfridge, J. P. Scott, and T. B. Clark, “Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters,” The Journal of Organic Chemistry, vol. 79, no. 15. American Chemical Society, pp. 7199–7204, 2014.
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2013 | Published | Journal Article | IST-REx-ID: 15162
M. H. Woehrmann et al., “Large-scale cytological profiling for functional analysis of bioactive compounds,” Molecular BioSystems, vol. 9, no. 11. Royal Society of Chemistry, 2013.
View | DOI
 
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19 Publications

Mark all

[19]
2025 | Published | Journal Article | IST-REx-ID: 20374 | OA | PlanS
D. Chakraborty et al., “Nucleosomes specify co-factor access to p53,” Molecular Cell, vol. 85, no. 15. Elsevier, p. 2919–2936.e12, 2025.
[Published Version] View | Files available | DOI
 
[18]
2025 | In Press | Journal Article | IST-REx-ID: 20935 | OA | PlanS
Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty S, Tagiltsev G, Michael AK, Van Dorst S, Waltz F, Mccafferty CL, Lamm L, Zufferey S, Van Der Stappen P, Van Den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JAG, Plitzko JM, Engel BD, Kotecha A. Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii. Molecular Cell.
[Published Version] View | DOI | Download Published Version (ext.)
 
[17]
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 20924 | OA | PlanS
W. Kobayashi, A. K. Michael, S. Ruangroengkulrith, M. Kümmecke, and K. Tachibana, “Protocol for integrative analysis of transcription factor-nucleosome interactions using SeEN-seq and cryo-EM structure determination,” STAR Protocols, vol. 7. Elsevier, 2025.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[16]
2023 | Published | Journal Article | IST-REx-ID: 15148 | OA
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schübeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thomä NH. 2023. Cooperation between bHLH transcription factors and histones for DNA access. Nature. 619(7969), 385–393.
[Published Version] View | DOI | Download Published Version (ext.)
 
[15]
2023 | Published | Journal Article | IST-REx-ID: 15149 | OA
L. Isbel et al., “Readout of histone methylation by Trim24 locally restricts chromatin opening by p53,” Nature Structural & Molecular Biology, vol. 30, no. 7. Springer Nature, pp. 948–957, 2023.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[14]
2021 | Published | Journal Article | IST-REx-ID: 15150
R. S. Grand et al., “BANP opens chromatin and activates CpG-island-regulated genes,” Nature, vol. 596. Springer Nature, pp. 133–137, 2021.
View | DOI
 
[13]
2021 | Published | Journal Article | IST-REx-ID: 15151 | OA
A. K. Michael and N. H. Thomä, “Reading the chromatinized genome,” Cell, vol. 184, no. 14. Elsevier, pp. 3599–3611, 2021.
[Published Version] View | DOI | Download Published Version (ext.)
 
[12]
2020 | Published | Journal Article | IST-REx-ID: 15152
A. K. Michael et al., “Mechanisms of OCT4-SOX2 motif readout on nucleosomes,” Science, vol. 368, no. 6498. American Association for the Advancement of Science , pp. 1460–1465, 2020.
View | DOI
 
[11]
2020 | Published | Journal Article | IST-REx-ID: 15153 | OA
J. L. Fribourgh et al., “Dynamics at the serine loop underlie differential affinity of cryptochromes for CLOCK:BMAL1 to control circadian timing,” eLife, vol. 9. eLife Sciences Publications, 2020.
[Published Version] View | DOI | Download Published Version (ext.)
 
[10]
2019 | Published | Preprint | IST-REx-ID: 15147 | OA
J. L. Fribourgh et al., “Protein dynamics regulate distinct biochemical properties of cryptochromes in mammalian circadian rhythms,” bioRxiv. 2019.
[Preprint] View | DOI | Download Preprint (ext.)
 
[9]
2017 | Published | Journal Article | IST-REx-ID: 15154 | OA
J. C. Fong et al., “Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms,” eLife, vol. 6. eLife Sciences Publications, 2017.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[8]
2017 | Published | Journal Article | IST-REx-ID: 15155 | OA
C. L. Gustafson et al., “A slow conformational switch in the BMAL1 transactivation domain modulates circadian rhythms,” Molecular Cell, vol. 66, no. 4. Elsevier, p. 447–457.e7, 2017.
[Published Version] View | DOI | Download Published Version (ext.)
 
[7]
2017 | Published | Journal Article | IST-REx-ID: 15156
R. Tseng et al., “Structural basis of the day-night transition in a bacterial circadian clock,” Science, vol. 355, no. 6330. American Association for the Advancement of Science, pp. 1174–1180, 2017.
View | DOI
 
[6]
2017 | Published | Journal Article | IST-REx-ID: 15157 | OA
A. K. Michael et al., “Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1,” Proceedings of the National Academy of Sciences, vol. 114, no. 7. Proceedings of the National Academy of Sciences, pp. 1560–1565, 2017.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
[5]
2017 | Published | Journal Article | IST-REx-ID: 15158 | OA
A. K. Michael, J. L. Fribourgh, R. N. Van Gelder, and C. L. Partch, “Animal cryptochromes: Divergent roles in light perception, circadian timekeeping and beyond,” Photochemistry and Photobiology, vol. 93, no. 1. Wiley, pp. 128–140, 2017.
[Published Version] View | DOI | Download Published Version (ext.)
 
[4]
2015 | Published | Journal Article | IST-REx-ID: 15159
A. K. Michael, H. Asimgil, and C. L. Partch, “Cytosolic BMAL1 moonlights as a translation factor,” Trends in Biochemical Sciences, vol. 40, no. 9. Elsevier, pp. 489–490, 2015.
View | DOI
 
[3]
2015 | Published | Journal Article | IST-REx-ID: 15160 | OA
A. K. Michael et al., “Cancer/Testis antigen PASD1 silences the circadian clock,” Molecular Cell, vol. 58, no. 5. Elsevier, pp. 743–754, 2015.
[Published Version] View | DOI | Download Published Version (ext.)
 
[2]
2014 | Published | Journal Article | IST-REx-ID: 15161 | OA
W. Guan, A. K. Michael, M. L. McIntosh, L. Koren-Selfridge, J. P. Scott, and T. B. Clark, “Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters,” The Journal of Organic Chemistry, vol. 79, no. 15. American Chemical Society, pp. 7199–7204, 2014.
[Published Version] View | DOI | Download Published Version (ext.)
 
[1]
2013 | Published | Journal Article | IST-REx-ID: 15162
M. H. Woehrmann et al., “Large-scale cytological profiling for functional analysis of bioactive compounds,” Molecular BioSystems, vol. 9, no. 11. Royal Society of Chemistry, 2013.
View | DOI
 
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Citation Style: IEEE

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