ISTA Research Explorer

Pradeep K Mandal

45 Publications

[45]

2026 | In Press | Journal Article | IST-REx-ID: 22289

Wu J, Corvaglia V, Chakrabortty T, Mandal PK, Huc I. Tailoring the major groove of DNA mimic foldamers. Chemical Science. doi:10.1039/d6sc00798h

[Published Version] View | DOI

[44]

Wu J, Corvaglia V, Chakrabortty T, Mandal PK, Huc I. Tailoring the major groove of DNA mimic foldamers. Chemical Science. 2026;17(32):15479–15489. doi:10.1039/d6sc00798h

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[43]

Loos M, Xu F, Mandal PK, et al. Interfacing B‐DNA and DNA mimic foldamers. Angewandte Chemie International Edition. 2025;64(31). doi:10.1002/anie.202505273

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[42]

Jin Y, Mandal PK, Wu J, et al. Light-mediated interconversion between a foldamer and a self-replicator. Journal of the American Chemical Society. 2024;146(49):33395-33402. doi:10.1021/jacs.4c09114

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[41]

Sood A, Mandal PK, Ottelé J, et al. Simultaneous formation of a foldamer and a self-replicator by out-of-equilibrium dynamic covalent chemistry. Journal of the American Chemical Society. 2024;146(49):33386-33394. doi:10.1021/jacs.4c09111

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[40]

Kwon S, Morozov V, Wang L, et al. Interrogating the potential of helical aromatic foldamers for protein recognition. Organic & Biomolecular Chemistry. 2024;22(48):9342-9347. doi:10.1039/d4ob01436g

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[39]

2023 | Published | Journal Article | IST-REx-ID: 20966 |

Koehler V, Bruschera G, Merlet E, et al. High‐affinity hybridization of complementary aromatic oligoamide strands in water. Angewandte Chemie International Edition. 2023;62(48). doi:10.1002/anie.202311639

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[38]

Teng B, Mandal PK, Allmendinger L, Douat C, Ferrand Y, Huc I. Controlling aromatic helix dimerization in water by tuning charge repulsions. Chemical Science. 2023;14(40):11251-11260. doi:10.1039/d3sc02020g

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[37]

2023 | Published | Journal Article | IST-REx-ID: 20969 |

Zhang Y, Ourri B, Skowron P-T, et al. Self-assembly of achiral building blocks into chiral cyclophanes using non-directional interactions. Chemical Science. 2023;14(26):7126-7135. doi:10.1039/d3sc01235b

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[36]

Jin Y, Mandal PK, Wu J, Böcher N, Huc I, Otto S. (Re-)directing oligomerization of a single building block into two specific dynamic covalent foldamers through pH. Journal of the American Chemical Society. 2023;145(5):2822-2829. doi:10.1021/jacs.2c09325

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[35]

2022 | Published | Journal Article | IST-REx-ID: 21078 |

Mandal PK, Collie GW, Kauffmann B, Huc I. Racemic crystal structures of A-DNA duplexes. Acta Crystallographica Section D Structural Biology. 2022;78(6):709-715. doi:10.1107/s2059798322003928

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[34]

2022 | Published | Journal Article | IST-REx-ID: 21079 |

Bindl D, Mandal PK, Huc I. Generalizing the aromatic δ‐amino acid foldamer helix. Chemistry – A European Journal. 2022;28(31). doi:10.1002/chem.202200538

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[33]

2022 | Published | Journal Article | IST-REx-ID: 21080 |

Bindl D, Mandal PK, Allmendinger L, Huc I. Discrete stacked dimers of aromatic oligoamide helices. Angewandte Chemie International Edition. 2022;61(11). doi:10.1002/anie.202116509

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[32]

2021 | Published | Journal Article | IST-REx-ID: 21081 |

Dengler S, Mandal PK, Allmendinger L, Douat C, Huc I. Conformational interplay in hybrid peptide–helical aromatic foldamer macrocycles. Chemical Science. 2021;12(33):11004-11012. doi:10.1039/d1sc03640h

[Published Version] View | DOI | Download Published Version (ext.)

[31]

2021 | Published | Journal Article | IST-REx-ID: 21082

Bindl D, Heinemann E, Mandal PK, Huc I. Quantitative helix handedness bias through a single H vs. CH3 stereochemical differentiation. Chemical Communications. 2021;57(46):5662-5665. doi:10.1039/d1cc01452h

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[30]

2020 | Published | Journal Article | IST-REx-ID: 21083 |

Zwillinger M, Reddy PS, Wicher B, et al. Aromatic foldamer helices as α‐helix extended surface mimetics. Chemistry – A European Journal. 2020;26(72):17366-17370. doi:10.1002/chem.202004064

[Published Version] View | DOI | Download Published Version (ext.)

[29]

2020 | Published | Journal Article | IST-REx-ID: 21084 |

Pappas CG, Mandal PK, Liu B, et al. Emergence of low-symmetry foldamers from single monomers. Nature Chemistry. 2020;12(12):1180-1186. doi:10.1038/s41557-020-00565-2

[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC

[28]

2020 | Published | Journal Article | IST-REx-ID: 21085 |

Hu X, Mandal PK, Kauffmann B, Huc I. Hybrid sequences that express both aromatic amide and α‐peptidic folding features. ChemPlusChem. 2020;85(7):1580-1586. doi:10.1002/cplu.202000416

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[27]

2019 | Published | Journal Article | IST-REx-ID: 21095 |

Corvaglia V, Carbajo D, Prabhakaran P, et al. Carboxylate-functionalized foldamer inhibitors of HIV-1 integrase and Topoisomerase 1: Artificial analogues of DNA mimic proteins. Nucleic Acids Research. 2019;47(11):5511-5521. doi:10.1093/nar/gkz352

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[26]

2018 | Published | Journal Article | IST-REx-ID: 21094

Karthik S, Mandal PK, Thirugnanasambandam A, Gautham N. Crystal structures of disordered Z-type helices. Nucleosides, Nucleotides & Nucleic Acids. 2018;38(4):279-293. doi:10.1080/15257770.2018.1517883

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[25]

2018 | Published | Journal Article | IST-REx-ID: 21096 |

Jeamet E, Septavaux J, Héloin A, et al. Wetting the lock and key enthalpically favours polyelectrolyte binding. Chemical Science. 2018;10(1):277-283. doi:10.1039/c8sc02966k

[Published Version] View | DOI | Download Published Version (ext.)

[24]

2018 | Published | Journal Article | IST-REx-ID: 21097

Rogers JM, Kwon S, Dawson SJ, Mandal PK, Suga H, Huc I. Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids. Nature Chemistry. 2018;10(4):405-412. doi:10.1038/s41557-018-0007-x

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[23]

2018 | Published | Journal Article | IST-REx-ID: 21152

Dileep KV, Remya C, Tintu I, et al. Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid. IUBMB Life. 2018;70(10):995-1001. doi:10.1002/iub.1924

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[22]

2017 | Published | Journal Article | IST-REx-ID: 21098 |

Hu X, Dawson SJ, Mandal PK, de Hatten X, Baptiste B, Huc I. Optimizing side chains for crystal growth from water: a case study of aromatic amide foldamers. Chemical Science. 2017;8(5):3741-3749. doi:10.1039/c7sc00430c

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[21]

2017 | Published | Journal Article | IST-REx-ID: 21156

Karthik S, Thirugnanasambandam A, Mandal PK, Gautham N. Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 Å resolution. Acta Crystallographica Section F Structural Biology Communications. 2017;73(5):259-265. doi:10.1107/s2053230x17004770

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[20]

2017 | Published | Journal Article | IST-REx-ID: 21157

Karthik S, Thirugnanasambandam A, Mandal PK, Gautham N. Comparison of X-ray crystal structures of a tetradecamer sequence d(CCCGGGTACCCGGG)2 at 1.7 Å resolution. Nucleosides, Nucleotides and Nucleic Acids. 2017;36(5):343-354. doi:10.1080/15257770.2017.1287378

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[19]

2016 | Published | Journal Article | IST-REx-ID: 21099

Mandal PK, Baptiste B, Langlois d’Estaintot B, Kauffmann B, Huc I. Multivalent interactions between an aromatic helical foldamer and a DNA G‐quadruplex in the solid state. ChemBioChem. 2016;17(20):1911-1914. doi:10.1002/cbic.201600281

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[18]

2016 | Published | Journal Article | IST-REx-ID: 21100

Mandal PK, Kauffmann B, Destecroix H, Ferrand Y, Davis AP, Huc I. Crystal structure of a complex between β-glucopyranose and a macrocyclic receptor with dendritic multicharged water solubilizing chains. Chemical Communications. 2016;52(60):9355-9358. doi:10.1039/c6cc04466b

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[17]

2016 | Published | Journal Article | IST-REx-ID: 21101 |

Mandal PK, Collie GW, Srivastava SC, Kauffmann B, Huc I. Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography. Nucleic Acids Research. 2016;44(12):5936-5943. doi:10.1093/nar/gkw367

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[16]

2015 | Published | Journal Article | IST-REx-ID: 21103

Thirugnanasambandam A, Karthik S, Mandal PK, Gautham N. The novel double-folded structure of d(GCATGCATGC): A possible model for triplet-repeat sequences. Acta Crystallographica Section D Structural Biology. 2015;71(10):2119-2126. doi:10.1107/s1399004715013930

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[15]

2014 | Published | Journal Article | IST-REx-ID: 21102 |

Mandal PK, Collie GW, Kauffmann B, Huc I. Racemic DNA crystallography. Angewandte Chemie International Edition. 2014;53(52):14424-14427. doi:10.1002/anie.201409014

[Published Version] View | DOI | Download Published Version (ext.)

[14]

2014 | Published | Journal Article | IST-REx-ID: 21155

Purushothaman M, Varghese A, Mandal PK, Gautham N. Structure of d(CCCCGGTACCGGGG)2 at 1.65 Å resolution. Acta Crystallographica Section F Structural Biology Communications. 2014;70(7):860-865. doi:10.1107/s2053230x1401084x

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[13]

2013 | Published | Journal Article | IST-REx-ID: 21110

Aggarwal N, Mandal PK, Gautham N, Chadha A. Expression, purification, crystallization and preliminary X-ray diffraction analysis of carbonyl reductase from Candida parapsilosis ATCC 7330. Acta Crystallographica Section F Structural Biology Communications. 2013;69(3):313-315. doi:10.1107/s1744309113003667

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[12]

2012 | Published | Journal Article | IST-REx-ID: 21104

Mandal PK, Venkadesh S, Gautham N. Interactions of Mn2+ with a non-self-complementary Z-type DNA duplex. Acta Crystallographica Section F Structural Biology Communications. 2012;68(12):1420-1426. doi:10.1107/s1744309112041759

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[11]

2012 | Published | Journal Article | IST-REx-ID: 21105

Mandal PK, Chandrasekaran AR, Madhanagopal BR, Venkadesh S, Gautham N. Ring crystals of oligonucleotides: Growth stages and X-ray diffraction studies. Journal of Crystal Growth. 2012;354(1):20-26. doi:10.1016/j.jcrysgro.2012.05.029

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[10]

2012 | Published | Journal Article | IST-REx-ID: 21106

Mandal PK, Venkadesh S, Gautham N. Structure of the tetradecanucleotide d(CCCCGGTACCGGGG)2 as an A-DNA duplex. Acta Crystallographica Section F Structural Biology Communications. 2012;68(4):393-399. doi:10.1107/s174430911200869x

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[9]

2012 | Published | Journal Article | IST-REx-ID: 21111 |

Dileep KV, Tintu I, Mandal PK, Karthe P, Haridas M, Sadasivan C. Binding to PLA2 may contribute to the anti‐inflammatory activity of catechol. Chemical Biology & Drug Design. 2012;79(1):143-147. doi:10.1111/j.1747-0285.2011.01258.x

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[8]

2012 | Published | Journal Article | IST-REx-ID: 21112 |

Aparna V, Dileep KV, Mandal PK, Karthe P, Sadasivan C, Haridas M. Anti-inflammatory property of n-hexadecanoic acid: Structural evidence and kinetic assessment. Chemical Biology & Drug Design. 2012;80(3):434-439. doi:10.1111/j.1747-0285.2012.01418.x

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[7]

2012 | Published | Journal Article | IST-REx-ID: 21151

Venkadesh S, Mandal PK, Gautham N. Crystallographic and spectroscopic studies of d(CCGGTACCGG). Nucleosides, Nucleotides and Nucleic Acids. 2012;31(3):184-196. doi:10.1080/15257770.2011.648363

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[6]

2012 | Published | Journal Article | IST-REx-ID: 21153

Dileep KV, Tintu I, Mandal PK, Karthe P, Haridas M, Sadasivan C. Crystal structure of porcine pancreatic phospholipase A2 in complex with 2-methoxycyclohexa-2-5-diene-1,4-dione. Frontiers in Life Science. 2012;5(3-4):135-139. doi:10.1080/21553769.2012.689262

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[5]

2012 | Published | Journal Article | IST-REx-ID: 21154

Chakraborty A, Mandal PK, Gautham N. Structure of d(CCGGGACCGG)4 as a four-way junction at 1.6 Å resolution: New insights into solvent interactions. Acta Crystallographica Section F Structural Biology Communications. 2012;68(10):1169-1174. doi:10.1107/s1744309112034926

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[4]

2011 | Published | Journal Article | IST-REx-ID: 21107

Mandal PK, Venkadesh S, Gautham N. Structure of d(CGGGTACCCG)4 as a four-way Holliday junction. Acta Crystallographica Section F Structural Biology Communications. 2011;67(12):1506-1510. doi:10.1107/s1744309111046616

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[3]

2011 | Published | Journal Article | IST-REx-ID: 21108 |

Venkadesh S, Mandal PK, Gautham N. The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice. Biochemical and Biophysical Research Communications. 2011;407(3):548-551. doi:10.1016/j.bbrc.2011.03.056

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[2]

2011 | Published | Journal Article | IST-REx-ID: 21109 |

Venkadesh S, Mandal PK, Gautham N. The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)2. Biochemical and Biophysical Research Communications. 2011;407(2):307-312. doi:10.1016/j.bbrc.2011.03.007

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[1]

2009 | Published | Journal Article | IST-REx-ID: 21150

Venkadesh S, Mandal PK, Gautham N. The structure of d(CACACG)·d(CGTGTG). Acta Crystallographica Section F Structural Biology Communications. 2009;65(1):8-13. doi:10.1107/s1744309108037706

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[45]

2026 | In Press | Journal Article | IST-REx-ID: 22289

Wu J, Corvaglia V, Chakrabortty T, Mandal PK, Huc I. Tailoring the major groove of DNA mimic foldamers. Chemical Science. doi:10.1039/d6sc00798h

[Published Version] View | DOI

[44]

Wu J, Corvaglia V, Chakrabortty T, Mandal PK, Huc I. Tailoring the major groove of DNA mimic foldamers. Chemical Science. 2026;17(32):15479–15489. doi:10.1039/d6sc00798h

[Published Version] View | Files available | DOI | PubMed | Europe PMC

[43]

Loos M, Xu F, Mandal PK, et al. Interfacing B‐DNA and DNA mimic foldamers. Angewandte Chemie International Edition. 2025;64(31). doi:10.1002/anie.202505273

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[42]

Jin Y, Mandal PK, Wu J, et al. Light-mediated interconversion between a foldamer and a self-replicator. Journal of the American Chemical Society. 2024;146(49):33395-33402. doi:10.1021/jacs.4c09114

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[41]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[40]

Kwon S, Morozov V, Wang L, et al. Interrogating the potential of helical aromatic foldamers for protein recognition. Organic & Biomolecular Chemistry. 2024;22(48):9342-9347. doi:10.1039/d4ob01436g

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[39]

2023 | Published | Journal Article | IST-REx-ID: 20966 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[38]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[37]

2023 | Published | Journal Article | IST-REx-ID: 20969 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[36]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[35]

2022 | Published | Journal Article | IST-REx-ID: 21078 |

Mandal PK, Collie GW, Kauffmann B, Huc I. Racemic crystal structures of A-DNA duplexes. Acta Crystallographica Section D Structural Biology. 2022;78(6):709-715. doi:10.1107/s2059798322003928

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[34]

2022 | Published | Journal Article | IST-REx-ID: 21079 |

Bindl D, Mandal PK, Huc I. Generalizing the aromatic δ‐amino acid foldamer helix. Chemistry – A European Journal. 2022;28(31). doi:10.1002/chem.202200538

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[33]

2022 | Published | Journal Article | IST-REx-ID: 21080 |

Bindl D, Mandal PK, Allmendinger L, Huc I. Discrete stacked dimers of aromatic oligoamide helices. Angewandte Chemie International Edition. 2022;61(11). doi:10.1002/anie.202116509

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[32]

2021 | Published | Journal Article | IST-REx-ID: 21081 |

[Published Version] View | DOI | Download Published Version (ext.)

[31]

2021 | Published | Journal Article | IST-REx-ID: 21082

View | DOI | PubMed | Europe PMC

[30]

2020 | Published | Journal Article | IST-REx-ID: 21083 |

Zwillinger M, Reddy PS, Wicher B, et al. Aromatic foldamer helices as α‐helix extended surface mimetics. Chemistry – A European Journal. 2020;26(72):17366-17370. doi:10.1002/chem.202004064

[Published Version] View | DOI | Download Published Version (ext.)

[29]

2020 | Published | Journal Article | IST-REx-ID: 21084 |

Pappas CG, Mandal PK, Liu B, et al. Emergence of low-symmetry foldamers from single monomers. Nature Chemistry. 2020;12(12):1180-1186. doi:10.1038/s41557-020-00565-2

[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC

[28]

2020 | Published | Journal Article | IST-REx-ID: 21085 |

Hu X, Mandal PK, Kauffmann B, Huc I. Hybrid sequences that express both aromatic amide and α‐peptidic folding features. ChemPlusChem. 2020;85(7):1580-1586. doi:10.1002/cplu.202000416

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[27]

2019 | Published | Journal Article | IST-REx-ID: 21095 |

[Published Version] View | DOI | Download Published Version (ext.)

[26]

2018 | Published | Journal Article | IST-REx-ID: 21094

View | DOI | PubMed | Europe PMC

[25]

2018 | Published | Journal Article | IST-REx-ID: 21096 |

Jeamet E, Septavaux J, Héloin A, et al. Wetting the lock and key enthalpically favours polyelectrolyte binding. Chemical Science. 2018;10(1):277-283. doi:10.1039/c8sc02966k

[Published Version] View | DOI | Download Published Version (ext.)

[24]

2018 | Published | Journal Article | IST-REx-ID: 21097

View | Files available | DOI | PubMed | Europe PMC

[23]

2018 | Published | Journal Article | IST-REx-ID: 21152

Dileep KV, Remya C, Tintu I, et al. Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid. IUBMB Life. 2018;70(10):995-1001. doi:10.1002/iub.1924

View | DOI | PubMed | Europe PMC

[22]

2017 | Published | Journal Article | IST-REx-ID: 21098 |

[Published Version] View | DOI | Download Published Version (ext.)

[21]

2017 | Published | Journal Article | IST-REx-ID: 21156

View | DOI

[20]

2017 | Published | Journal Article | IST-REx-ID: 21157

View | DOI | PubMed | Europe PMC

[19]

2016 | Published | Journal Article | IST-REx-ID: 21099

View | DOI

[18]

2016 | Published | Journal Article | IST-REx-ID: 21100

View | DOI

[17]

2016 | Published | Journal Article | IST-REx-ID: 21101 |

[Published Version] View | DOI | Download Published Version (ext.)

[16]

2015 | Published | Journal Article | IST-REx-ID: 21103

View | DOI

[15]

2014 | Published | Journal Article | IST-REx-ID: 21102 |

Mandal PK, Collie GW, Kauffmann B, Huc I. Racemic DNA crystallography. Angewandte Chemie International Edition. 2014;53(52):14424-14427. doi:10.1002/anie.201409014

[Published Version] View | DOI | Download Published Version (ext.)

[14]

2014 | Published | Journal Article | IST-REx-ID: 21155

View | DOI

[13]

2013 | Published | Journal Article | IST-REx-ID: 21110

View | DOI

[12]

2012 | Published | Journal Article | IST-REx-ID: 21104

View | DOI

[11]

2012 | Published | Journal Article | IST-REx-ID: 21105

View | DOI

[10]

2012 | Published | Journal Article | IST-REx-ID: 21106

View | DOI

[9]

2012 | Published | Journal Article | IST-REx-ID: 21111 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[8]

2012 | Published | Journal Article | IST-REx-ID: 21112 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[7]

2012 | Published | Journal Article | IST-REx-ID: 21151

Venkadesh S, Mandal PK, Gautham N. Crystallographic and spectroscopic studies of d(CCGGTACCGG). Nucleosides, Nucleotides and Nucleic Acids. 2012;31(3):184-196. doi:10.1080/15257770.2011.648363

View | DOI | PubMed | Europe PMC

[6]

2012 | Published | Journal Article | IST-REx-ID: 21153

View | DOI

[5]

2012 | Published | Journal Article | IST-REx-ID: 21154

View | DOI

[4]

2011 | Published | Journal Article | IST-REx-ID: 21107

View | DOI

[3]

2011 | Published | Journal Article | IST-REx-ID: 21108 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[2]

2011 | Published | Journal Article | IST-REx-ID: 21109 |

View | DOI | Download None (ext.) | PubMed | Europe PMC

[1]

2009 | Published | Journal Article | IST-REx-ID: 21150

Venkadesh S, Mandal PK, Gautham N. The structure of d(CACACG)·d(CGTGTG). Acta Crystallographica Section F Structural Biology Communications. 2009;65(1):8-13. doi:10.1107/s1744309108037706

View | DOI

Pradeep K Mandal

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