ISTA Research Explorer

Pradeep K Mandal

43 Publications

[43]

Interfacing B‐DNA and DNA mimic foldamers
M. Loos, F. Xu, P.K. Mandal, T. Chakrabortty, C. Douat, D.B. Konrad, M. Cabbar, J. Singer, V. Corvaglia, T. Carell, I. Huc, Angewandte Chemie International Edition 64 (2025).

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[42]

Light-mediated interconversion between a foldamer and a self-replicator
Y. Jin, P.K. Mandal, J. Wu, A. Kiani, R. Zhao, I. Huc, S. Otto, Journal of the American Chemical Society 146 (2024) 33395–33402.

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[41]

Simultaneous formation of a foldamer and a self-replicator by out-of-equilibrium dynamic covalent chemistry
A. Sood, P.K. Mandal, J. Ottelé, J. Wu, M. Eleveld, J. Hatai, C.G. Pappas, I. Huc, S. Otto, Journal of the American Chemical Society 146 (2024) 33386–33394.

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[40]

Interrogating the potential of helical aromatic foldamers for protein recognition
S. Kwon, V. Morozov, L. Wang, P.K. Mandal, S. Chaignepain, C. Douat, I. Huc, Organic & Biomolecular Chemistry 22 (2024) 9342–9347.

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[39]

2023 | Published | Journal Article | IST-REx-ID: 20966 |

High‐affinity hybridization of complementary aromatic oligoamide strands in water
V. Koehler, G. Bruschera, E. Merlet, P.K. Mandal, E. Morvan, F. Rosu, C. Douat, L. Fischer, I. Huc, Y. Ferrand, Angewandte Chemie International Edition 62 (2023).

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[38]

Controlling aromatic helix dimerization in water by tuning charge repulsions
B. Teng, P.K. Mandal, L. Allmendinger, C. Douat, Y. Ferrand, I. Huc, Chemical Science 14 (2023) 11251–11260.

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[37]

2023 | Published | Journal Article | IST-REx-ID: 20969 |

Self-assembly of achiral building blocks into chiral cyclophanes using non-directional interactions
Y. Zhang, B. Ourri, P.-T. Skowron, E. Jeamet, T. Chetot, C. Duchamp, A.M. Belenguer, N. Vanthuyne, O. Cala, E. Dumont, P.K. Mandal, I. Huc, F. Perret, L. Vial, J. Leclaire, Chemical Science 14 (2023) 7126–7135.

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[36]

(Re-)directing oligomerization of a single building block into two specific dynamic covalent foldamers through pH
Y. Jin, P.K. Mandal, J. Wu, N. Böcher, I. Huc, S. Otto, Journal of the American Chemical Society 145 (2023) 2822–2829.

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[35]

2022 | Published | Journal Article | IST-REx-ID: 21078 |

Racemic crystal structures of A-DNA duplexes
P.K. Mandal, G.W. Collie, B. Kauffmann, I. Huc, Acta Crystallographica Section D Structural Biology 78 (2022) 709–715.

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[34]

2022 | Published | Journal Article | IST-REx-ID: 21079 |

Generalizing the aromatic δ‐amino acid foldamer helix
D. Bindl, P.K. Mandal, I. Huc, Chemistry – A European Journal 28 (2022).

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[33]

2022 | Published | Journal Article | IST-REx-ID: 21080 |

Discrete stacked dimers of aromatic oligoamide helices
D. Bindl, P.K. Mandal, L. Allmendinger, I. Huc, Angewandte Chemie International Edition 61 (2022).

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[32]

2021 | Published | Journal Article | IST-REx-ID: 21081 |

Conformational interplay in hybrid peptide–helical aromatic foldamer macrocycles
S. Dengler, P.K. Mandal, L. Allmendinger, C. Douat, I. Huc, Chemical Science 12 (2021) 11004–11012.

[Published Version] View | DOI | Download Published Version (ext.)

[31]

2021 | Published | Journal Article | IST-REx-ID: 21082

Quantitative helix handedness bias through a single H vs. CH3 stereochemical differentiation
D. Bindl, E. Heinemann, P.K. Mandal, I. Huc, Chemical Communications 57 (2021) 5662–5665.

View | DOI | PubMed | Europe PMC

[30]

2020 | Published | Journal Article | IST-REx-ID: 21083 |

Aromatic foldamer helices as α‐helix extended surface mimetics
M. Zwillinger, P.S. Reddy, B. Wicher, P.K. Mandal, M. Csékei, L. Fischer, A. Kotschy, I. Huc, Chemistry – A European Journal 26 (2020) 17366–17370.

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[29]

2020 | Published | Journal Article | IST-REx-ID: 21084 |

Emergence of low-symmetry foldamers from single monomers
C.G. Pappas, P.K. Mandal, B. Liu, B. Kauffmann, X. Miao, D. Komáromy, W. Hoffmann, C. Manz, R. Chang, K. Liu, K. Pagel, I. Huc, S. Otto, Nature Chemistry 12 (2020) 1180–1186.

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[28]

2020 | Published | Journal Article | IST-REx-ID: 21085 |

Hybrid sequences that express both aromatic amide and α‐peptidic folding features
X. Hu, P.K. Mandal, B. Kauffmann, I. Huc, ChemPlusChem 85 (2020) 1580–1586.

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[27]

2019 | Published | Journal Article | IST-REx-ID: 21095 |

Carboxylate-functionalized foldamer inhibitors of HIV-1 integrase and Topoisomerase 1: Artificial analogues of DNA mimic proteins
V. Corvaglia, D. Carbajo, P. Prabhakaran, K. Ziach, P.K. Mandal, V.D. Santos, C. Legeay, R. Vogel, V. Parissi, P. Pourquier, I. Huc, Nucleic Acids Research 47 (2019) 5511–5521.

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[26]

2018 | Published | Journal Article | IST-REx-ID: 21094

Crystal structures of disordered Z-type helices
S. Karthik, P.K. Mandal, A. Thirugnanasambandam, N. Gautham, Nucleosides, Nucleotides & Nucleic Acids 38 (2018) 279–293.

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[25]

2018 | Published | Journal Article | IST-REx-ID: 21096 |

Wetting the lock and key enthalpically favours polyelectrolyte binding
E. Jeamet, J. Septavaux, A. Héloin, M. Donnier-Maréchal, M. Dumartin, B. Ourri, P.K. Mandal, I. Huc, E. Bignon, E. Dumont, C. Morell, J.-P. Francoia, F. Perret, L. Vial, J. Leclaire, Chemical Science 10 (2018) 277–283.

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[24]

2018 | Published | Journal Article | IST-REx-ID: 21097

Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids
J.M. Rogers, S. Kwon, S.J. Dawson, P.K. Mandal, H. Suga, I. Huc, Nature Chemistry 10 (2018) 405–412.

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[23]

2018 | Published | Journal Article | IST-REx-ID: 21152

Crystal structure of phospholipase A2 in complex with 1‐naphthaleneacetic acid
K.V. Dileep, C. Remya, I. Tintu, P.K. Mandal, P. Karthe, M. Haridas, C. Sadasivan, IUBMB Life 70 (2018) 995–1001.

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[22]

2017 | Published | Journal Article | IST-REx-ID: 21098 |

Optimizing side chains for crystal growth from water: a case study of aromatic amide foldamers
X. Hu, S.J. Dawson, P.K. Mandal, X. de Hatten, B. Baptiste, I. Huc, Chemical Science 8 (2017) 3741–3749.

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[21]

2017 | Published | Journal Article | IST-REx-ID: 21156

Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 Å resolution
S. Karthik, A. Thirugnanasambandam, P.K. Mandal, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 73 (2017) 259–265.

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[20]

2017 | Published | Journal Article | IST-REx-ID: 21157

Comparison of X-ray crystal structures of a tetradecamer sequence d(CCCGGGTACCCGGG)2 at 1.7 Å resolution
S. Karthik, A. Thirugnanasambandam, P.K. Mandal, N. Gautham, Nucleosides, Nucleotides and Nucleic Acids 36 (2017) 343–354.

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[19]

2016 | Published | Journal Article | IST-REx-ID: 21099

Multivalent interactions between an aromatic helical foldamer and a DNA G‐quadruplex in the solid state
P.K. Mandal, B. Baptiste, B. Langlois d’Estaintot, B. Kauffmann, I. Huc, ChemBioChem 17 (2016) 1911–1914.

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[18]

2016 | Published | Journal Article | IST-REx-ID: 21100

Crystal structure of a complex between β-glucopyranose and a macrocyclic receptor with dendritic multicharged water solubilizing chains
P.K. Mandal, B. Kauffmann, H. Destecroix, Y. Ferrand, A.P. Davis, I. Huc, Chemical Communications 52 (2016) 9355–9358.

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[17]

2016 | Published | Journal Article | IST-REx-ID: 21101 |

Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography
P.K. Mandal, G.W. Collie, S.C. Srivastava, B. Kauffmann, I. Huc, Nucleic Acids Research 44 (2016) 5936–5943.

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[16]

2015 | Published | Journal Article | IST-REx-ID: 21103

The novel double-folded structure of d(GCATGCATGC): A possible model for triplet-repeat sequences
A. Thirugnanasambandam, S. Karthik, P.K. Mandal, N. Gautham, Acta Crystallographica Section D Structural Biology 71 (2015) 2119–2126.

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[15]

2014 | Published | Journal Article | IST-REx-ID: 21102 |

Racemic DNA crystallography
P.K. Mandal, G.W. Collie, B. Kauffmann, I. Huc, Angewandte Chemie International Edition 53 (2014) 14424–14427.

[Published Version] View | DOI | Download Published Version (ext.)

[14]

2014 | Published | Journal Article | IST-REx-ID: 21155

Structure of d(CCCCGGTACCGGGG)2 at 1.65 Å resolution
M. Purushothaman, A. Varghese, P.K. Mandal, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 70 (2014) 860–865.

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[13]

2013 | Published | Journal Article | IST-REx-ID: 21110

Expression, purification, crystallization and preliminary X-ray diffraction analysis of carbonyl reductase from Candida parapsilosis ATCC 7330
N. Aggarwal, P.K. Mandal, N. Gautham, A. Chadha, Acta Crystallographica Section F Structural Biology Communications 69 (2013) 313–315.

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[12]

2012 | Published | Journal Article | IST-REx-ID: 21104

Interactions of Mn2+ with a non-self-complementary Z-type DNA duplex
P.K. Mandal, S. Venkadesh, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 68 (2012) 1420–1426.

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[11]

2012 | Published | Journal Article | IST-REx-ID: 21105

Ring crystals of oligonucleotides: Growth stages and X-ray diffraction studies
P.K. Mandal, A.R. Chandrasekaran, B.R. Madhanagopal, S. Venkadesh, N. Gautham, Journal of Crystal Growth 354 (2012) 20–26.

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[10]

2012 | Published | Journal Article | IST-REx-ID: 21106

Structure of the tetradecanucleotide d(CCCCGGTACCGGGG)2 as an A-DNA duplex
P.K. Mandal, S. Venkadesh, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 68 (2012) 393–399.

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[9]

2012 | Published | Journal Article | IST-REx-ID: 21111 |

Binding to PLA2 may contribute to the anti‐inflammatory activity of catechol
K.V. Dileep, I. Tintu, P.K. Mandal, P. Karthe, M. Haridas, C. Sadasivan, Chemical Biology & Drug Design 79 (2012) 143–147.

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[8]

2012 | Published | Journal Article | IST-REx-ID: 21112 |

Anti-inflammatory property of n-hexadecanoic acid: Structural evidence and kinetic assessment
V. Aparna, K.V. Dileep, P.K. Mandal, P. Karthe, C. Sadasivan, M. Haridas, Chemical Biology & Drug Design 80 (2012) 434–439.

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[7]

2012 | Published | Journal Article | IST-REx-ID: 21151

Crystallographic and spectroscopic studies of d(CCGGTACCGG)
S. Venkadesh, P.K. Mandal, N. Gautham, Nucleosides, Nucleotides and Nucleic Acids 31 (2012) 184–196.

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[6]

2012 | Published | Journal Article | IST-REx-ID: 21153

Crystal structure of porcine pancreatic phospholipase A2 in complex with 2-methoxycyclohexa-2-5-diene-1,4-dione
K.V. Dileep, I. Tintu, P.K. Mandal, P. Karthe, M. Haridas, C. Sadasivan, Frontiers in Life Science 5 (2012) 135–139.

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[5]

2012 | Published | Journal Article | IST-REx-ID: 21154

Structure of d(CCGGGACCGG)4 as a four-way junction at 1.6 Å resolution: New insights into solvent interactions
A. Chakraborty, P.K. Mandal, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 68 (2012) 1169–1174.

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[4]

2011 | Published | Journal Article | IST-REx-ID: 21107

Structure of d(CGGGTACCCG)4 as a four-way Holliday junction
P.K. Mandal, S. Venkadesh, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 67 (2011) 1506–1510.

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[3]

2011 | Published | Journal Article | IST-REx-ID: 21108 |

The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice
S. Venkadesh, P.K. Mandal, N. Gautham, Biochemical and Biophysical Research Communications 407 (2011) 548–551.

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[2]

2011 | Published | Journal Article | IST-REx-ID: 21109 |

The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)2
S. Venkadesh, P.K. Mandal, N. Gautham, Biochemical and Biophysical Research Communications 407 (2011) 307–312.

View | DOI | Download None (ext.) | PubMed | Europe PMC

[1]

2009 | Published | Journal Article | IST-REx-ID: 21150

The structure of d(CACACG)·d(CGTGTG)
S. Venkadesh, P.K. Mandal, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 65 (2009) 8–13.

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43 Publications

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[43]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[42]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[41]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[40]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[39]

2023 | Published | Journal Article | IST-REx-ID: 20966 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[38]

Controlling aromatic helix dimerization in water by tuning charge repulsions
B. Teng, P.K. Mandal, L. Allmendinger, C. Douat, Y. Ferrand, I. Huc, Chemical Science 14 (2023) 11251–11260.

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[37]

2023 | Published | Journal Article | IST-REx-ID: 20969 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[36]

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[35]

2022 | Published | Journal Article | IST-REx-ID: 21078 |

Racemic crystal structures of A-DNA duplexes
P.K. Mandal, G.W. Collie, B. Kauffmann, I. Huc, Acta Crystallographica Section D Structural Biology 78 (2022) 709–715.

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[34]

2022 | Published | Journal Article | IST-REx-ID: 21079 |

Generalizing the aromatic δ‐amino acid foldamer helix
D. Bindl, P.K. Mandal, I. Huc, Chemistry – A European Journal 28 (2022).

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[33]

2022 | Published | Journal Article | IST-REx-ID: 21080 |

Discrete stacked dimers of aromatic oligoamide helices
D. Bindl, P.K. Mandal, L. Allmendinger, I. Huc, Angewandte Chemie International Edition 61 (2022).

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[32]

2021 | Published | Journal Article | IST-REx-ID: 21081 |

Conformational interplay in hybrid peptide–helical aromatic foldamer macrocycles
S. Dengler, P.K. Mandal, L. Allmendinger, C. Douat, I. Huc, Chemical Science 12 (2021) 11004–11012.

[Published Version] View | DOI | Download Published Version (ext.)

[31]

2021 | Published | Journal Article | IST-REx-ID: 21082

Quantitative helix handedness bias through a single H vs. CH3 stereochemical differentiation
D. Bindl, E. Heinemann, P.K. Mandal, I. Huc, Chemical Communications 57 (2021) 5662–5665.

View | DOI | PubMed | Europe PMC

[30]

2020 | Published | Journal Article | IST-REx-ID: 21083 |

[Published Version] View | DOI | Download Published Version (ext.)

[29]

2020 | Published | Journal Article | IST-REx-ID: 21084 |

[Preprint] View | DOI | Download Preprint (ext.) | PubMed | Europe PMC

[28]

2020 | Published | Journal Article | IST-REx-ID: 21085 |

Hybrid sequences that express both aromatic amide and α‐peptidic folding features
X. Hu, P.K. Mandal, B. Kauffmann, I. Huc, ChemPlusChem 85 (2020) 1580–1586.

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[27]

2019 | Published | Journal Article | IST-REx-ID: 21095 |

[Published Version] View | DOI | Download Published Version (ext.)

[26]

2018 | Published | Journal Article | IST-REx-ID: 21094

Crystal structures of disordered Z-type helices
S. Karthik, P.K. Mandal, A. Thirugnanasambandam, N. Gautham, Nucleosides, Nucleotides & Nucleic Acids 38 (2018) 279–293.

View | DOI | PubMed | Europe PMC

[25]

2018 | Published | Journal Article | IST-REx-ID: 21096 |

[Published Version] View | DOI | Download Published Version (ext.)

[24]

2018 | Published | Journal Article | IST-REx-ID: 21097

Ribosomal synthesis and folding of peptide-helical aromatic foldamer hybrids
J.M. Rogers, S. Kwon, S.J. Dawson, P.K. Mandal, H. Suga, I. Huc, Nature Chemistry 10 (2018) 405–412.

View | Files available | DOI | PubMed | Europe PMC

[23]

2018 | Published | Journal Article | IST-REx-ID: 21152

View | DOI | PubMed | Europe PMC

[22]

2017 | Published | Journal Article | IST-REx-ID: 21098 |

[Published Version] View | DOI | Download Published Version (ext.)

[21]

2017 | Published | Journal Article | IST-REx-ID: 21156

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[20]

2017 | Published | Journal Article | IST-REx-ID: 21157

View | DOI | PubMed | Europe PMC

[19]

2016 | Published | Journal Article | IST-REx-ID: 21099

View | DOI

[18]

2016 | Published | Journal Article | IST-REx-ID: 21100

View | DOI

[17]

2016 | Published | Journal Article | IST-REx-ID: 21101 |

[Published Version] View | DOI | Download Published Version (ext.)

[16]

2015 | Published | Journal Article | IST-REx-ID: 21103

View | DOI

[15]

2014 | Published | Journal Article | IST-REx-ID: 21102 |

Racemic DNA crystallography
P.K. Mandal, G.W. Collie, B. Kauffmann, I. Huc, Angewandte Chemie International Edition 53 (2014) 14424–14427.

[Published Version] View | DOI | Download Published Version (ext.)

[14]

2014 | Published | Journal Article | IST-REx-ID: 21155

View | DOI

[13]

2013 | Published | Journal Article | IST-REx-ID: 21110

View | DOI

[12]

2012 | Published | Journal Article | IST-REx-ID: 21104

View | DOI

[11]

2012 | Published | Journal Article | IST-REx-ID: 21105

View | DOI

[10]

2012 | Published | Journal Article | IST-REx-ID: 21106

View | DOI

[9]

2012 | Published | Journal Article | IST-REx-ID: 21111 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[8]

2012 | Published | Journal Article | IST-REx-ID: 21112 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[7]

2012 | Published | Journal Article | IST-REx-ID: 21151

Crystallographic and spectroscopic studies of d(CCGGTACCGG)
S. Venkadesh, P.K. Mandal, N. Gautham, Nucleosides, Nucleotides and Nucleic Acids 31 (2012) 184–196.

View | DOI | PubMed | Europe PMC

[6]

2012 | Published | Journal Article | IST-REx-ID: 21153

View | DOI

[5]

2012 | Published | Journal Article | IST-REx-ID: 21154

View | DOI

[4]

2011 | Published | Journal Article | IST-REx-ID: 21107

Structure of d(CGGGTACCCG)4 as a four-way Holliday junction
P.K. Mandal, S. Venkadesh, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 67 (2011) 1506–1510.

View | DOI

[3]

2011 | Published | Journal Article | IST-REx-ID: 21108 |

[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC

[2]

2011 | Published | Journal Article | IST-REx-ID: 21109 |

The structure of a full turn of an A-DNA duplex d(CGCGGGTACCCGCG)2
S. Venkadesh, P.K. Mandal, N. Gautham, Biochemical and Biophysical Research Communications 407 (2011) 307–312.

View | DOI | Download None (ext.) | PubMed | Europe PMC

[1]

2009 | Published | Journal Article | IST-REx-ID: 21150

The structure of d(CACACG)·d(CGTGTG)
S. Venkadesh, P.K. Mandal, N. Gautham, Acta Crystallographica Section F Structural Biology Communications 65 (2009) 8–13.

View | DOI

Pradeep K Mandal

43 Publications

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