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Sofia Backlund

Pablo Mateu Hoyos

Tetiana Rabiichuk

Céline Camila Coraly Bräutigam

Elia Mascolo

Puzhen Xia

Bahti Zakirov

Natalia Ruzickova

Simon Rella

Julian Renaud

Reka Borbely

Athina Diakogianni

Alexis Benichou

Alex Chen Yi Zhang

Krishnan Iyer

Tereza Zuskinova

Anuj Patel

Gasper Tkacik

Ekaterina Maksimova

Gabor Lengyel

Gabriel Mitchell

Moritz Lang

Michal Hledik

Matthew Chalk

Remy Chait

Aditya Gilra

Heloisa Chiossi

Sreyam Sengupta

Thomas Sokolowski

Georg Martius

Anna Andersson

Jakob Ruess

Vicent Botella Soler

Bor Kavcic

Sarah Cepeda Humerez

David Brückner

Georg Rieckh

Mantas Gabrielaitis

Cristina Savin

Fabrizio Lombardi

Katarina Bodova

Roshan Prizak

Daniele De Martino

Anna Levina (Martius)

Jan Humplik

Rok Grah

Tamar Friedlander



187 Publications

2019 | Published | Journal Article | IST-REx-ID: 7422 | OA
eGFRD in all dimensions
T.R. Sokolowski, J. Paijmans, L. Bossen, T. Miedema, M. Wehrens, N.B. Becker, K. Kaizu, K. Takahashi, M. Dogterom, P.R. ten Wolde, The Journal of Chemical Physics 150 (2019).
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2019 | Published | Journal Article | IST-REx-ID: 6900 | OA
Estimating information in time-varying signals
S.A. Cepeda Humerez, J. Ruess, G. Tkačik, PLoS Computational Biology 15 (2019) e1007290.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Published | Journal Article | IST-REx-ID: 5945 | OA
Optimal decoding of cellular identities in a genetic network
M.D. Petkova, G. Tkačik, W. Bialek, E.F. Wieschaus, T. Gregor, Cell 176 (2019) 844–855.e15.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2019 | Published | Journal Article | IST-REx-ID: 6049 | OA
Feedback-induced self-oscillations in large interacting systems subjected to phase transitions
D. De Martino, Journal of Physics A: Mathematical and Theoretical 52 (2019).
[Published Version] View | Files available | DOI | WoS
 
2019 | Published | Journal Article | IST-REx-ID: 7103 | OA
Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture
J.W.J.L. Wang, F. Lombardi, X. Zhang, C. Anaclet, P.C. Ivanov, PLoS Computational Biology 15 (2019).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2019 | Published | Journal Article | IST-REx-ID: 6784 | OA
Molecular noise of innate immunity shapes bacteria-phage ecologies
J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, PLoS Computational Biology 15 (2019).
[Published Version] View | Files available | DOI | WoS
 
2019 | Research Data Reference | IST-REx-ID: 9786
Supporting text and results
J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, (2019).
[Published Version] View | Files available | DOI
 
2019 | Published | Journal Article | IST-REx-ID: 6046 | OA
Temporal order and precision of complex stress responses in individual bacteria
K. Mitosch, G. Rieckh, M.T. Bollenbach, Molecular Systems Biology 15 (2019).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2019 | Published | Conference Paper | IST-REx-ID: 7606 | OA
A tight upper bound on mutual information
M. Hledik, T.R. Sokolowski, G. Tkačik, in:, IEEE Information Theory Workshop, ITW 2019, IEEE, 2019.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2019 | Submitted | Preprint | IST-REx-ID: 7552 | OA
Action at a distance in transcriptional regulation
W. Bialek, T. Gregor, G. Tkačik, ArXiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2019 | Published | Journal Article | IST-REx-ID: 196 | OA
Harmonic dynamics of the Abelian sandpile
M. Lang, M. Shkolnikov, Proceedings of the National Academy of Sciences of the United States of America 116 (2019) 2821–2830.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC | arXiv
 
2019 | Published | Thesis | IST-REx-ID: 6071 | OA
Coevolution of transcription factors and their binding sites in sequence space
R. Prizak, Coevolution of Transcription Factors and Their Binding Sites in Sequence Space, Institute of Science and Technology Austria, 2019.
[Published Version] View | Files available | DOI
 
2019 | Published | Thesis | IST-REx-ID: 6473 | OA
Estimating information flow in single cells
S.A. Cepeda Humerez, Estimating Information Flow in Single Cells, Institute of Science and Technology Austria, 2019.
[Published Version] View | Files available | DOI
 
2019 | Published | Book Chapter | IST-REx-ID: 19988 | OA
The Essential Role of Thermodynamics in Metabolic Network Modeling: Physical Insights and Computational Challenges
A. De Martino, D. De Martino, E. Marinari, in:, Chemical Kinetics, World Scientific Publishing, 2019, pp. 455–471.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2018 | Published | Journal Article | IST-REx-ID: 607 | OA
Well posedness and maximum entropy approximation for the dynamics of quantitative traits
K. Bodova, J. Haskovec, P. Markowich, Physica D: Nonlinear Phenomena 376–377 (2018) 108–120.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2018 | Published | Journal Article | IST-REx-ID: 19 | OA
Nonoptimal gene expression creates latent potential for antibiotic resistance
A. Palmer, R.P. Chait, R. Kishony, Molecular Biology and Evolution 35 (2018) 2669–2684.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2018 | Published | Journal Article | IST-REx-ID: 281 | OA
Distributed and dynamic intracellular organization of extracellular information
A. Granados, J. Pietsch, S.A. Cepeda Humerez, I. Farquhar, G. Tkačik, P. Swain, PNAS 115 (2018) 6088–6093.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
2018 | Published | Journal Article | IST-REx-ID: 406 | OA
Probabilistic models of individual and collective animal behavior
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, PLoS One 13 (2018).
[Submitted Version] View | Files available | DOI | WoS
 
2018 | Research Data Reference | IST-REx-ID: 9831
Implementation of the inference method in Matlab
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, (2018).
[Published Version] View | Files available | DOI
 
2018 | Published | Journal Article | IST-REx-ID: 161 | OA
Statistical mechanics for metabolic networks during steady state growth
D. De Martino, A.A. Mc, T. Bergmiller, C.C. Guet, G. Tkačik, Nature Communications 9 (2018).
[Published Version] View | Files available | DOI | WoS
 

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