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202 Publications
2025 |
Published |
Journal Article |
IST-REx-ID: 18849 |
Sokolowski TR, Gregor T, Bialek W, Tkačik G. Deriving a genetic regulatory network from an optimization principle. Proceedings of the National Academy of Sciences. 2025;122(1). doi:10.1073/pnas.2402925121
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2025 |
Published |
Journal Article |
IST-REx-ID: 18850 |
Perkins ML, Crocker J, Tkačik G. Chromatin enables precise and scalable gene regulation with factors of limited specificity. Proceedings of the National Academy of Sciences. 2025;122(1). doi:10.1073/pnas.2411887121
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2025 |
Published |
Journal Article |
IST-REx-ID: 18936 |
Grah R, Guet CC, Tkačik G, Lagator M. Linking molecular mechanisms to their evolutionary consequences: a primer. Genetics. 2025;229(2). doi:10.1093/genetics/iyae191
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2025 |
Research Data |
IST-REx-ID: 18991 |
Chiossi HSC. Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” 2025. doi:10.15479/AT:ISTA:18991
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2025 |
Research Data |
IST-REx-ID: 19294 |
Jain K, Hauschild R, Bochkareva O, Römhild R, Tkačik G, Guet CC. Data for “Pulsatile basal gene expression as a fitness determinant in bacteria.” 2025. doi:10.15479/AT:ISTA:19294
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2025 |
Published |
Journal Article |
IST-REx-ID: 19453 |
Chiossi HSC, Nardin M, Tkačik G, Csicsvari JL. Learning reshapes the hippocampal representation hierarchy. Proceedings of the National Academy of Sciences. 2025;122(11). doi:10.1073/pnas.2417025122
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2025 |
Published |
Journal Article |
IST-REx-ID: 19626 |
Jain K, Hauschild R, Bochkareva O, Römhild R, Tkačik G, Guet CC. Pulsatile basal gene expression as a fitness determinant in bacteria. Proceedings of the National Academy of Sciences. 2025;122(15). doi:10.1073/pnas.2413709122
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2025 |
Research Data |
IST-REx-ID: 19658 |
Tkačik G. Token-driven totally asymmetric simple exclusion processes. 2025. doi:10.15479/AT:ISTA:19658
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2025 |
Published |
Journal Article |
IST-REx-ID: 19701 |
Tkačik G, Wolde PRT. Information processing in biochemical networks. Annual review of biophysics. 2025;54:249-274. doi:10.1146/annurev-biophys-060524-102720
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2025 |
Published |
Journal Article |
IST-REx-ID: 21269 |
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Zhang CY, Rosa A, Sanguinetti G. bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction. PRX Life. 2025;3(4). doi:10.1103/gy1p-4256
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2024 |
Published |
Journal Article |
IST-REx-ID: 18307 |
Rella S, Kulikova YA, Minnegalieva A, Kondrashov F. Complex vaccination strategies prevent the emergence of vaccine resistance. Evolution: International journal of organic evolution. 2024;78(10):1722-1738. doi:10.1093/evolut/qpae106
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2024 |
Published |
Journal Article |
IST-REx-ID: 18525 |
Ruzickova N, Hledik M, Tkačik G. Quantitative omnigenic model discovers interpretable genome-wide associations. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(44). doi:10.1073/pnas.2402340121
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2024 |
Published |
Journal Article |
IST-REx-ID: 18902 |
Zagorski M, Brandenberg N, Lutolf M, et al. Assessing the precision of morphogen gradients in neural tube development. Nature Communications. 2024;15. doi:10.1038/s41467-024-45148-8
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2024 |
Published |
Journal Article |
IST-REx-ID: 14901 |
Nomura K, Rella S, Merritt H, et al. Tipping points of space debris in low earth orbit. International Journal of the Commons. 2024;18(1). doi:10.5334/ijc.1275
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2024 |
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Thesis | PhD |
IST-REx-ID: 15020 |
Hledik M. Genetic information and biological optimization. 2024. doi:10.15479/at:ista:15020
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2024 |
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Journal Article |
IST-REx-ID: 17123 |
Brückner D, Tkačik G. Information content and optimization of self-organized developmental systems. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(23). doi:10.1073/pnas.2322326121
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2023 |
Published |
Journal Article |
IST-REx-ID: 14402 |
Lombardi F, Herrmann HJ, Parrino L, et al. Beyond pulsed inhibition: Alpha oscillations modulate attenuation and amplification of neural activity in the awake resting state. Cell Reports. 2023;42(10). doi:10.1016/j.celrep.2023.113162
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2023 |
Published |
Journal Article |
IST-REx-ID: 14515 |
Reinhardt M, Tkačik G, Ten Wolde PR. Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. 2023;13(4). doi:10.1103/PhysRevX.13.041017
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| arXiv
2023 |
Published |
Journal Article |
IST-REx-ID: 12487 |
Scarpetta S, Morrisi N, Mutti C, et al. Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture. iScience. 2023;26(10):107840. doi:10.1016/j.isci.2023.107840
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2023 |
Published |
Journal Article |
IST-REx-ID: 12762 |
Lombardi F, Pepic S, Shriki O, Tkačik G, De Martino D. Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain. Nature Computational Science. 2023;3:254-263. doi:10.1038/s43588-023-00410-9
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