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4951 Publications

2010 | Journal Article | IST-REx-ID: 3776 | OA
Barton NH. 2010. Genetic linkage and natural selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1552), 2559–2569.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 3773 | OA
Barton NH. 2010. What role does natural selection play in speciation? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1547), 1825–1840.
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2010 | Journal Article | IST-REx-ID: 3777 | OA
Barton NH. 2010. Mutation and the evolution of recombination. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365(1544), 1281–1294.
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2010 | Journal Article | IST-REx-ID: 3774
Senn H, Swanson G, Goodman S, Barton NH, Pemberton J. 2010. Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2), 414–425.
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2010 | Journal Article | IST-REx-ID: 3772 | OA
Barton NH. 2010. Understanding adaptation in large populations. PLoS Genetics. 6(6), e1000987.
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2010 | Journal Article | IST-REx-ID: 3790 | OA
Diz Muñoz A, Krieg M, Bergert M, Ibarlucea Benitez I, Müller D, Paluch E, Heisenberg C-PJ. 2010. Control of directed cell migration in vivo by membrane-to-cortex attachment. PLoS Biology. 8(11), e1000544.
[Published Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3793 | OA
Nowozin S, Gehler P, Lampert C. 2010. On parameter learning in CRF-based approaches to object class image segmentation. ECCV: European Conference on Computer Vision, LNCS, vol. 6316, 98–111.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 3789
Quesada-Hernández E, Caneparo L, Schneider S, Winkler S, Liebling M, Fraser S, Heisenberg C-PJ. 2010. Stereotypical cell division orientation controls neural rod midline formation in zebrafish. Current Biology. 20(21), 1966–1972.
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2010 | Journal Article | IST-REx-ID: 3787 | OA
Palero F, Hall S, Clark P, Johnston D, Mackenzie Dodds J, Thatje S. 2010. DNA extraction from formalin-fixed tissue: new light from the deep sea. Scientia Marina. 74(3), 465–470.
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2010 | Journal Article | IST-REx-ID: 3788
Klopper A, Krens G, Grill S, Heisenberg C-PJ. 2010. Finite-size corrections to scaling behavior in sorted cell aggregates. The European Physical Journal E: Soft Matter and Biological Physics. 33(2), 99–103.
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2010 | Journal Article | IST-REx-ID: 3786
Palero F, Guerao G, Clark P, Abello P. 2010. Final-stage phyllosoma of Palinustus A. Milne-Edwards, 1880 (Crustacea: Decapoda: Achelata: Palinuridae)-The first complete description. Zootaxa. 2403(1), 42–58.
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2010 | Journal Article | IST-REx-ID: 3834 | OA
Wolf V, Goel R, Mateescu M, Henzinger TA. 2010. Solving the chemical master equation using sliding windows. BMC Systems Biology. 4(42), 1–19.
[Published Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3840
Henzinger TA. 2010. From boolean to quantitative notions of correctness. POPL: Principles of Programming Languages vol. 45, 157–158.
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2010 | Conference Paper | IST-REx-ID: 3839 | OA
Henzinger TA, Hottelier T, Kovács L, Voronkov A. 2010. Invariant and type inference for matrices. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944, 163–179.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3838 | OA
Henzinger TA, Mateescu M, Mikeev L, Wolf V. 2010. Hybrid numerical solution of the chemical master equation. CMSB: Computational Methods in Systems Biology, 55–65.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3853 | OA
Chatterjee K, Doyen L, Edelsbrunner H, Henzinger TA, Rannou P. 2010. Mean-payoff automaton expressions. CONCUR: Concurrency Theory, LNCS, vol. 6269, 269–283.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3849 | OA
Bendich P, Edelsbrunner H, Kerber M, Patel A. 2010. Persistent homology under non-uniform error. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 12–23.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3854
Chatterjee K, Horn F, Löding C. 2010. Obliging games. CONCUR: Concurrency Theory, LNCS, vol. 6269, 284–296.
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2010 | Conference Paper | IST-REx-ID: 3851 | OA
Chatterjee K, Doyen L. 2010. Energy parity games. ICALP: Automata, Languages and Programming, 37th International Colloquium, LNCS, vol. 6199, 599–610.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2010 | Conference Paper | IST-REx-ID: 3850
Berberich E, Halperin D, Kerber M, Pogalnikova R. 2010. Polygonal reconstruction from approximate offsets. EuroCG: European Workshop on Computational Geometry, 12–23.
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2010 | Conference Paper | IST-REx-ID: 3860 | OA
Chatterjee K, Doyen L, Henzinger TA, Raskin J. 2010. Generalized mean-payoff and energy games. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8, 505–516.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3864 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Singh R. 2010. Measuring and synthesizing systems in probabilistic environments. CAV: Computer Aided Verification, LNCS, vol. 6174, 380–395.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2010 | Conference Paper | IST-REx-ID: 3865
Chatterjee K, De Alfaro L, Raman V, Sánchez C. 2010. Analyzing the impact of change in multi-threaded programs. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013, 293–307.
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2010 | Journal Article | IST-REx-ID: 3863 | OA
Berwanger D, Chatterjee K, De Wulf M, Doyen L, Henzinger TA. 2010. Strategy construction for parity games with imperfect information. Information and Computation. 208(10), 1206–1220.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 3861 | OA
Chatterjee K, Henzinger TA, Piterman N. 2010. Strategy logic. Information and Computation. 208(6), 677–693.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 3901 | OA
Bendich P, Edelsbrunner H, Kerber M. 2010. Computing robustness and persistence for images. IEEE Transactions of Visualization and Computer Graphics. 16(6), 1251–1260.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 4157 | OA
Papusheva E, Heisenberg C-PJ. 2010. Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis. EMBO Journal. 29(16), 2753–2768.
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2010 | Conference Paper | IST-REx-ID: 4362
Singh V. 2010. Runtime verification for software transactional memories. RV: International Conference on Runtime Verification, LNCS, vol. 6418, 421–435.
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2010 | Conference Paper | IST-REx-ID: 4378 | OA
Kuncak V, Piskac R, Suter P, Wies T. 2010. Building a calculus of data structures. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 5944, 26–44.
[Submitted Version] View | DOI | Download Submitted Version (ext.)
 
2010 | Conference Paper | IST-REx-ID: 4381 | OA
Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. FlexPRICE: Flexible provisioning of resources in a cloud environment. CLOUD: Cloud Computing, 83–90.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4382 | OA
Guerraoui R, Henzinger TA, Kapalka M, Singh V. 2010. Transactions in the jungle. SPAA: ACM Symposium on Parallel Algorithms and Architectures, 263–272.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4380 | OA
Henzinger TA, Tomar A, Singh V, Wies T, Zufferey D. 2010. A marketplace for cloud resources. EMSOFT: Embedded Software , 1–8.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4389 | OA
Doyen L, Henzinger TA, Legay A, Nickovic D. 2010. Robustness of sequential circuits. ACSD: Application of Concurrency to System Design, 77–84.
[Submitted Version] View | Files available | DOI
 
2010 | Book Chapter | IST-REx-ID: 4392
Cerny P, Henzinger TA, Radhakrishna A. 2010.Quantitative Simulation Games. In: Time For Verification: Essays in Memory of Amir Pnueli. LNCS, vol. 6200, 42–60.
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2010 | Conference Paper | IST-REx-ID: 4396 | OA
Beyer D, Henzinger TA, Théoduloz G, Zufferey D. 2010. Shape refinement through explicit heap analysis. FASE: Fundamental Approaches To Software Engineering, LNCS, vol. 6013, 263–277.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 3867 | OA
Chatterjee K, Doyen L, Henzinger TA. 2010. Expressiveness and closure properties for quantitative languages. Logical Methods in Computer Science. 6(3), 1–23.
[Published Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 474
Barton NH, Kelleher J, Etheridge A. 2010. A new model for extinction and recolonization in two dimensions: Quantifying phylogeography. Evolution. 64(9), 2701–2715.
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2010 | Conference Paper | IST-REx-ID: 488 | OA
Alur R, Cerny P. 2010. Expressiveness of streaming string transducers. FSTTCS: Foundations of Software Technology and Theoretical Computer Science, LIPIcs, vol. 8, 1–12.
[Published Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 489 | OA
Cristau J, David C, Horn F. 2010. How do we remember the past in randomised strategies? . Proceedings of GandALF 2010. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25, 30–39.
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2010 | Journal Article | IST-REx-ID: 533
Hoenicke J, Leino K, Podelski A, Schäf M, Wies T. 2010. Doomed program points. Formal Methods in System Design. 37(2–3), 171–199.
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2010 | Conference Paper | IST-REx-ID: 4393 | OA
Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances. CONCUR: Concurrency Theory, LNCS, vol. 6269, 235–268.
[Submitted Version] View | Files available | DOI
 
2010 | Technical Report | IST-REx-ID: 5388 | OA
Chatterjee K, Cerny P, Henzinger TA, Radhakrishna A, Singh R. 2010. Quantitative synthesis for concurrent programs, IST Austria, 17p.
[Published Version] View | Files available | DOI
 
2010 | Technical Report | IST-REx-ID: 5389 | OA
Cerny P, Henzinger TA, Radhakrishna A. 2010. Simulation distances, IST Austria, 24p.
[Published Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4390 | OA
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations. CAV: Computer Aided Verification, LNCS, vol. 6174, 465–479.
[Submitted Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 4388 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2010. GIST: A solver for probabilistic games. CAV: Computer Aided Verification, LNCS, vol. 6174, 665–669.
[Submitted Version] View | Files available | DOI | arXiv
 
2010 | Technical Report | IST-REx-ID: 5391 | OA
Cerny P, Radhakrishna A, Zufferey D, Chaudhuri S, Alur R. 2010. Model checking of linearizability of concurrent list implementations, IST Austria, 27p.
[Published Version] View | Files available | DOI
 
2010 | Technical Report | IST-REx-ID: 5390 | OA
Chatterjee K, Fijalkow N. 2010. Topological, automata-theoretic and logical characterization of finitary languages, IST Austria, 21p.
[Published Version] View | Files available | DOI
 
2010 | Conference Paper | IST-REx-ID: 3857
Chatterjee K, Henzinger TA. 2010. Probabilistic Automata on infinite words: decidability and undecidability results. ATVA: Automated Technology for Verification and Analysis, LNCS, vol. 6252, 1–16.
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2010 | Conference Paper | IST-REx-ID: 3855 | OA
Chatterjee K, Doyen L, Henzinger TA. 2010. Qualitative analysis of partially-observable Markov Decision Processes. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 6281, 258–269.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 9485 | OA
Zemach A, Kim MY, Silva P, Rodrigues JA, Dotson B, Brooks MD, Zilberman D. 2010. Local DNA hypomethylation activates genes in rice endosperm. Proceedings of the National Academy of Sciences. 107(43), 18729–18734.
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2010 | Journal Article | IST-REx-ID: 9489 | OA
Zemach A, Zilberman D. 2010. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Current Biology. 20(17), R780–R785.
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2010 | Journal Article | IST-REx-ID: 9452
Zemach A, McDaniel IE, Silva P, Zilberman D. 2010. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. 328(5980), 916–919.
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2010 | Journal Article | IST-REx-ID: 3779 | OA
Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. 2010. Cryptic variation between species and the basis of hybrid performance. PLoS Biology. 8(7), e1000429.
[Published Version] View | Files available | DOI
 
2010 | Research Data Reference | IST-REx-ID: 9764
Rosas U, Barton NH, Copsey L, Barbier De Reuille P, Coen E. 2010. Heterosis and the drift load, Public Library of Science, 10.1371/journal.pbio.1000429.s003.
[Published Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 12199
Feng X, Dickinson HG. 2010. Tapetal cell fate, lineage and proliferation in the Arabidopsis anther. Development. 137(14), 2409–2416.
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2010 | Journal Article | IST-REx-ID: 12200
Feng X, Dickinson HG. 2010. Cell–cell interactions during patterning of the Arabidopsis anther. Biochemical Society Transactions. 38(2), 571–576.
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2010 | Conference Paper | IST-REx-ID: 3852 | OA
Chatterjee K, Majumdar R. 2010. Discounting in games across time scales. GandALF: Games, Automata, Logic, and Formal Verification, EPTCS, vol. 25, 22–29.
[Published Version] View | Files available | DOI | arXiv
 
2010 | Thesis | IST-REx-ID: 3962
Pflicke H. 2010.   Dendritic cell migration across basement membranes in the skin. Institute of Science and Technology Austria.
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2010 | Conference Paper | IST-REx-ID: 4361 | OA
Wies T, Zufferey D, Henzinger TA. 2010. Forward analysis of depth-bounded processes. FoSSaCS: Foundations of Software Science and Computation Structures, LNCS, vol. 6014, 94–108.
[Submitted Version] View | Files available | DOI
 
2010 | Journal Article | IST-REx-ID: 3785
Palero F, Abello P, Macpherson E, Matthee C, Pascual M. 2010. Genetic diversity levels in fishery-exploited spiny lobsters of the Genus Palinurus (Decapoda: Achelata). Journal of Crustacean Biology. 30(4), 658–663.
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2009 | Journal Article | IST-REx-ID: 3780 | OA
Davison A, Barton NH, Clarke B. 2009. The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails. Journal of Evolutionary Biology. 22(8), 1624–1635.
[Submitted Version] View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3843 | OA
Didier F, Henzinger TA, Mateescu M, Wolf V. 2009. Fast adaptive uniformization of the chemical master equation. HIBI: High-Performance Computational Systems Biology vol. 4, 118–127.
[Submitted Version] View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3841 | OA
Henzinger TA, Jobstmann B, Wolf V. 2009. Formalisms for specifying Markovian population models. RP: Reachability Problems, LNCS, vol. 5797, 3–23.
[Submitted Version] View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3844 | OA
Henzinger TA, Kirsch C, Marques E, Sokolova A. 2009. Distributed, modular HTL. RTSS: Real-Time Systems Symposium, 171–180.
[Submitted Version] View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3871 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Probabilistic weighted automata. CONCUR: Concurrency Theory, LNCS, vol. 5710, 244–258.
[Submitted Version] View | Files available | DOI
 
2009 | Journal Article | IST-REx-ID: 3870 | OA
Chatterjee K, Henzinger TA, Horn F. 2009. Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). 11(1), 1.
[Submitted Version] View | Files available | DOI
 
2009 | Journal Article | IST-REx-ID: 4136 | OA
Polechova J, Barton NH, Marion G. 2009. Species’ range: Adaptation in space and time. American Naturalist. 174(5), E186–E204.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2009 | Journal Article | IST-REx-ID: 4242 | OA
Barton NH, De Cara M. 2009. The evolution of strong reproductive isolation. Evolution; International Journal of Organic Evolution. 63(5), 1171–1190.
[Submitted Version] View | Files available | DOI
 
2009 | Book Chapter | IST-REx-ID: 3675
Barton NH. 2009.Why sex and recombination? . In: Cold Spring Harbor Symposia on Quantitative Biology. vol. 74, 187–195.
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2009 | Journal Article | IST-REx-ID: 3775 | OA
Barton NH, Coe J. 2009. On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. 259(2), 317–324.
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2009 | Conference Paper | IST-REx-ID: 3837 | OA
Tripakis S, Lickly B, Henzinger TA, Lee E. 2009. On relational interfaces. EMSOFT ’09 Proceedings of the seventh ACM international conference on Embedded software. EMSOFT: Embedded Software , 67–76.
[Submitted Version] View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 3968 | OA
Edelsbrunner H, Harer J. 2009. The persistent Morse complex segmentation of a 3-manifold. 3DPH: Modelling the Physiological Human, LNCS, vol. 5903, 36–50.
[Submitted Version] View | Files available | DOI
 
2009 | Journal Article | IST-REx-ID: 4231
Barton NH, De Vladar H. 2009. Statistical mechanics and the evolution of polygenic quantitative traits. Genetics. 181(3), 997–1011.
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2009 | Conference Paper | IST-REx-ID: 4542 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Alternating weighted automata. FCT: Fundamentals of Computation Theory, LNCS, vol. 5699, 3–13.
[Submitted Version] View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 4545 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. A survey of stochastic games with limsup and liminf objectives. ICALP: Automata, Languages and Programming, LNCS, vol. 5556, 1–15.
[Submitted Version] View | Files available | DOI
 
2009 | Conference Paper | IST-REx-ID: 4543
Chatterjee K, Henzinger TA, Horn F. 2009. Stochastic games with finitary objectives. MFCS: Mathematical Foundations of Computer Science, LNCS, vol. 5734, 34–54.
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2009 | Conference Paper | IST-REx-ID: 4569 | OA
Bloem R, Chatterjee K, Henzinger TA, Jobstmann B. 2009. Better quality in synthesis through quantitative objectives. CAV: Computer Aided Verification, LNCS, vol. 5643, 140–156.
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2009 | Technical Report | IST-REx-ID: 5393 | OA
Chatterjee K, Henzinger TA, Jobstmann B, Radhakrishna A. 2009. Gist: A solver for probabilistic games, IST Austria, 12p.
[Published Version] View | Files available | DOI
 
2009 | Technical Report | IST-REx-ID: 5394 | OA
Chatterjee K, Henzinger TA, Horn F. 2009. Improved lower bounds for request-response and finitary Streett games, IST Austria, 11p.
[Published Version] View | Files available | DOI
 
2009 | Technical Report | IST-REx-ID: 5392 | OA
Chatterjee K. 2009. Probabilistic automata on infinite words: Decidability and undecidability results, IST Austria, 17p.
[Published Version] View | Files available | DOI
 
2009 | Technical Report | IST-REx-ID: 5395 | OA
Chatterjee K, Doyen L, Henzinger TA. 2009. Qualitative analysis of partially-observable Markov decision processes, IST Austria, 20p.
[Published Version] View | Files available | DOI
 
2009 | Journal Article | IST-REx-ID: 9453 | OA
Hsieh T-F, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D. 2009. Genome-wide demethylation of Arabidopsis endosperm. Science. 324(5933), 1451–1454.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2008 | Journal Article | IST-REx-ID: 9537
Zilberman D. 2008. The evolving functions of DNA methylation. Current Opinion in Plant Biology. 11(5), 554–559.
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2008 | Journal Article | IST-REx-ID: 9457 | OA
Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S. 2008. Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature. 456(7218), 125–129.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | PubMed | Europe PMC
 
2008 | Journal Article | IST-REx-ID: 517
Barton NH. 2008. Identity and coalescence in structured populations: A commentary on ‘Inbreeding coefficients and coalescence times’ by Montgomery Slatkin. Genetics Research. 89(5–6), 475–477.
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2007 | Journal Article | IST-REx-ID: 9487 | OA
Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL. 2007. DNA demethylation in the Arabidopsis genome. Proceedings of the National Academy of Sciences. 104(16), 6752–6757.
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2007 | Other Publication | IST-REx-ID: 9504
Zilberman D. 2007. The human promoter methylome, Nature Publishing Group,p.
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2007 | Journal Article | IST-REx-ID: 9524 | OA
Zilberman D, Henikoff S. 2007. Genome-wide analysis of DNA methylation patterns. Development. 134(22), 3959–3965.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2007 | Journal Article | IST-REx-ID: 12201
Feng X, Dickinson HG. 2007. Packaging the male germline in plants. Trends in Genetics. 23(10), 503–510.
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2006 | Journal Article | IST-REx-ID: 9505
Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. 2006. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nature Genetics. 39(1), 61–69.
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2005 | Journal Article | IST-REx-ID: 9491 | OA
Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. 2005. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Current Biology. 15(2), 154–159.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2005 | Journal Article | IST-REx-ID: 9514 | OA
Tran RK, Zilberman D, de Bustos C, Ditt RF, Henikoff JG, Lindroth AM, Delrow J, Boyle T, Kwong S, Bryson TD, Jacobsen SE, Henikoff S. 2005. Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis. Genome Biology. 6(11), R90.
[Published Version] View | DOI | Download Published Version (ext.) | PubMed | Europe PMC
 
2005 | Journal Article | IST-REx-ID: 9529
Zilberman D, Henikoff S. 2005. Epigenetic inheritance in Arabidopsis: Selective silence. Current Opinion in Genetics and Development. 15(5), 557–562.
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2004 | Journal Article | IST-REx-ID: 9493 | OA
Zilberman D, Cao X, Johansen LK, Xie Z, Carrington JC, Jacobsen SE. 2004. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology. 14(13), 1214–1220.
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2004 | Journal Article | IST-REx-ID: 9517 | OA
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC. 2004. Genetic and functional diversification of small RNA pathways in plants. PLoS Biology. 2(5), 0642–0652.
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2004 | Journal Article | IST-REx-ID: 9511 | OA
Zilberman D, Henikoff S. 2004. Silencing of transposons in plant genomes: kick them when they’re down. Genome Biology. 5(12), 249.
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2004 | Journal Article | IST-REx-ID: 9454
Chan SW-L, Zilberman D, Xie Zhixin, Johansen Lisa K., Carrington JC, Jacobsen SE. 2004. RNA silencing genes control de novo DNA methylation. Science. 303(5662), 1336.
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2004 | Journal Article | IST-REx-ID: 12203
Liao Z, Chen M, Gong Y, Guo L, Tan Q, Feng X, Sun X, Tan F, Tang K. 2004. A new geranylgeranyl Diphosphate synthase gene from Ginkgo biloba, which intermediates the biosynthesis of the key precursor for ginkgolides. DNA Sequence. 15(2), 153–158.
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2003 | Journal Article | IST-REx-ID: 9495 | OA
Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE. 2003. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Current Biology. 13(24), 2212–2217.
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2003 | Journal Article | IST-REx-ID: 9455
Zilberman D, Cao Xiaofeng, Jacobsen SE. 2003. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 299(5607), 716–719.
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