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Gasper Tkacik

Sofia Backlund

Alexis Benichou

Céline Camila Coraly Bräutigam

Pietro Chiarantoni

Athina Diakogianni

Krishnan Iyer

Reka Borbely

Björn Kscheschinski

Teemu Kuosmanen

Gabor Lengyel

Ekaterina Maksimova

Elia Mascolo

Pablo Mateu Hoyos

Anuj Patel

Tetiana Rabiichuk

Simon Rella

Julian Renaud

Puzhen Xia

Bahti Zakirov

Alex Chen Yi Zhang

Tereza Zuskinova

Gabriel Mitchell

Anna Andersson

Katarina Bodova

Vicent Botella Soler

David Brückner

Sarah Cepeda Humerez

Remy Chait

Matthew Chalk

Heloisa Chiossi

Daniele De Martino

Tamar Friedlander

Mantas Gabrielaitis

Aditya Gilra

Rok Grah

Michal Hledik

Jan Humplik

Bor Kavcic

Moritz Lang

Anna Levina (Martius)

Fabrizio Lombardi

Georg Martius

Roshan Prizak

Georg Rieckh

Jakob Ruess

Natalia Ruzickova

Cristina Savin

Sreyam Sengupta

Thomas Sokolowski

196 Publications

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Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps
E. Mascolo, R.E. Körei, S. Herrera-Álvarez, C.C. Guet, J. Crocker, G. Tkačik, Current Opinion in Genetics & Development 99 (2026).

[Published Version] View | DOI | Download Published Version (ext.) | arXiv

Marr's three levels for embryonic development: Information, dynamical systems, gene networks
D. Brückner, G. Tkačik, PRX Life 4 (2026).

[Published Version] View | Files available | DOI | arXiv

Nonlocal decoding of positional and correlational information during development
C.Y. Zhang, P. Mateu Hoyos, D. Brückner, G. Tkačik, Physical Review Letters 137 (2026).

[Published Version] View | Files available | DOI

Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges
E. Mascolo, R.E. Körei, N.O. Borst, N.H. Barton, J. Crocker, G. Tkačik, Current Opinion in Genetics and Development 98 (2026).

[Published Version] View | Files available | DOI

2026 | Published | Thesis | MS | IST-REx-ID: 22399 |

Studying the evolutionary systems biology of the lac operon
A. Spasić, Studying the Evolutionary Systems Biology of the Lac Operon, Institute of Science and Technology Austria, 2026.

[Published Version] View | Files available | DOI

2026 | Published | Journal Article | IST-REx-ID: 22363 |

Invariant nonequilibrium dynamics in gene regulation optimize information flow
B. Zoller, A. Benichou, T. Gregor, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 123 (2026).

[Published Version] View | Files available | DOI | PubMed | Europe PMC

bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction
C.Y. Zhang, A. Rosa, G. Sanguinetti, PRX Life 3 (2025).

[Published Version] View | Files available | DOI | arXiv

2025 | Published | Journal Article | IST-REx-ID: 18849 |

Deriving a genetic regulatory network from an optimization principle
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Published | Journal Article | IST-REx-ID: 18850 |

Chromatin enables precise and scalable gene regulation with factors of limited specificity
M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Published | Journal Article | IST-REx-ID: 18936 |

Linking molecular mechanisms to their evolutionary consequences: a primer
R. Grah, C.C. Guet, G. Tkačik, M. Lagator, Genetics 229 (2025).

2025 | Published | Journal Article | IST-REx-ID: 19453 |

Learning reshapes the hippocampal representation hierarchy
H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Published | Journal Article | IST-REx-ID: 19626 |

Pulsatile basal gene expression as a fitness determinant in bacteria
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, Proceedings of the National Academy of Sciences 122 (2025).

2025 | Published | Journal Article | IST-REx-ID: 19701 |

Information processing in biochemical networks
G. Tkačik, P.R.T. Wolde, Annual Review of Biophysics 54 (2025) 249–274.

Quantifying the carbon footprint of conference travel: The case of NMR meetings
L. Kapoor, N. Ruzickova, P. Zivadinovic, V. Leitner, M.A. Sisak, C.N. Mweka, J.A. Dobbelaere, G. Katsaros, P. Schanda, Magnetic Resonance 6 (2025) 243–256.

[Published Version] View | Files available | DOI

2025 | Published | Thesis | PhD | IST-REx-ID: 20811 |

Adaptive processes in biology and culture: Models of evolving vaccine resistance and the record statistics of innovation
S. Rella, Adaptive Processes in Biology and Culture: Models of Evolving Vaccine Resistance and the Record Statistics of Innovation, Institute of Science and Technology Austria, 2025.

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19785 |

Token-driven totally asymmetric simple exclusion processes
B. Kavcic, G. Tkačik, Physical Review E 111 (2025).

[Published Version] View | Files available | DOI | WoS

2025 | Published | Thesis | PhD | IST-REx-ID: 20357

Effect propagation in biological networks
N. Ruzickova, Effect Propagation in Biological Networks, Institute of Science and Technology Austria, 2025.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 14901 |

Tipping points of space debris in low earth orbit
K. Nomura, S. Rella, H. Merritt, M. Baltussen, D. Bird, A. Tjuka, D. Falk, International Journal of the Commons 18 (2024).

[Published Version] View | Files available | DOI

2024 | Published | Thesis | PhD | IST-REx-ID: 15020 |

Genetic information and biological optimization
M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.

[Published Version] View | Files available | DOI

2024 | Published | Journal Article | IST-REx-ID: 17123 |

Information content and optimization of self-organized developmental systems
D. Brückner, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).

Tkacik Group

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Alumni

196 Publications

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Tkacik Group

Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).

Alumni

196 Publications

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Search

Filter Publications

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