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Tetiana Rabiichuk

Pablo Mateu Hoyos

Sofia Backlund

Gabor Lengyel

Reka Borbely

Alex Chen Yi Zhang

Bahti Zakirov

Ekaterina Maksimova

Alexis Benichou

Teemu Kuosmanen

Anuj Patel

Julian Renaud

Bjoern Kscheschinski

Elia Mascolo

Puzhen Xia

Krishnan Iyer

Tereza Zuskinova

Céline Camila Coraly Bräutigam

Athina Diakogianni

Natalia Ruzickova

Gasper Tkacik

Simon Rella

Michal Hledik

Roshan Prizak

Daniele De Martino

Vicent Botella Soler

Matthew Chalk

Anna Andersson

Thomas Sokolowski

Georg Rieckh

David Brückner

Remy Chait

Tamar Friedlander

Jan Humplik

Heloisa Chiossi

Katarina Bodova

Gabriel Mitchell

Georg Martius

Mantas Gabrielaitis

Sreyam Sengupta

Jakob Ruess

Moritz Lang

Sarah Cepeda Humerez

Fabrizio Lombardi

Anna Levina (Martius)

Cristina Savin

Bor Kavcic

Rok Grah

Aditya Gilra



202 Publications

2022 | Published | Journal Article | IST-REx-ID: 12156 | OA
Eukaryotic gene regulation at equilibrium, or non?
B. Zoller, T. Gregor, G. Tkačik, Current Opinion in Systems Biology 31 (2022).
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
2022 | Published | Journal Article | IST-REx-ID: 12332 | OA
Efficient coding theory of dynamic attentional modulation
W.F. Mlynarski, G. Tkačik, PLoS Biology 20 (2022) e3001889.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2022 | Published | Journal Article | IST-REx-ID: 10736 | OA
Predicting bacterial promoter function and evolution from random sequences
M. Lagator, S. Sarikas, M. Steinrück, D. Toledo-Aparicio, J.P. Bollback, C.C. Guet, G. Tkačik, ELife 11 (2022).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2022 | Draft | Preprint | IST-REx-ID: 10821 | OA
Alpha rhythm induces attenuation-amplification dynamics in neural activity cascades
F. Lombardi, H.J. Herrmann, L. Parrino, D. Plenz, S. Scarpetta, A.E. Vaudano, L. de Arcangelis, O. Shriki, BioRxiv (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2022 | Published | Journal Article | IST-REx-ID: 10530 | OA
Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration
T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal 121 (2022) P44-60.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Submitted | Preprint | IST-REx-ID: 10579 | OA
Token-driven totally asymmetric simple exclusion process
B. Kavcic, G. Tkačik, ArXiv (n.d.).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2021 | Submitted | Preprint | IST-REx-ID: 10912 | OA
Quantifying the coexistence of neuronal oscillations and avalanches
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, (n.d.).
[Preprint] View | DOI | Download Preprint (ext.) | arXiv
 
2021 | Published | Journal Article | IST-REx-ID: 10535 | OA
Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
[Published Version] View | Files available | DOI | PubMed | Europe PMC | arXiv
 
2021 | Published | Journal Article | IST-REx-ID: 8997 | OA
Minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 9226 | OA
The many bits of positional information
G. Tkačik, T. Gregor, Development 148 (2021).
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 9283 | OA
Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 9362 | OA
Inferring the function performed by a recurrent neural network
M.J. Chalk, G. Tkačik, O. Marre, PLoS ONE 16 (2021).
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 9439 | OA
Efficient and adaptive sensory codes
W.F. Mlynarski, A.M. Hermundstad, Nature Neuroscience 24 (2021) 998–1009.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 7463 | OA
Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches
F. Lombardi, O. Shriki, H.J. Herrmann, L. de Arcangelis, Neurocomputing 461 (2021) 657–666.
[Preprint] View | DOI | Download Preprint (ext.) | WoS
 
2021 | Published | Journal Article | IST-REx-ID: 7553 | OA
Statistical analysis and optimality of neural systems
W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, Neuron 109 (2021) 1227–1241.e5.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 9822 | OA
Sequential and switchable patterning for studying cellular processes under spatiotemporal control
T. Zisis, J. Schwarz, M. Balles, M. Kretschmer, M. Nemethova, R.P. Chait, R. Hauschild, J. Lange, C.C. Guet, M.K. Sixt, S. Zahler, ACS Applied Materials and Interfaces 13 (2021) 35545–35560.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
2021 | Published | Journal Article | IST-REx-ID: 9828 | OA
Fast and accurate amplitude demodulation of wideband signals
M. Gabrielaitis, IEEE Transactions on Signal Processing 69 (2021) 4039–4054.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 
2021 | Draft | Preprint | IST-REx-ID: 10077 | OA
The structure of hippocampal CA1 interactions optimizes spatial coding across experience
M. Nardin, J.L. Csicsvari, G. Tkačik, C. Savin, BioRxiv (n.d.).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2020 | Published | Preprint | IST-REx-ID: 7675 | OA
Normative models of enhancer function
R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
2020 | Published | Journal Article | IST-REx-ID: 8084 | OA
Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake
F. Lombardi, M. Gómez-Extremera, P. Bernaola-Galván, R. Vetrivelan, C.B. Saper, T.E. Scammell, P.C. Ivanov, Journal of Neuroscience 40 (2020) 171–190.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 

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