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193 Publications
2020 | Published | Thesis | IST-REx-ID: 8155 | 
Grah R. 2020. Gene regulation across scales – how biophysical constraints shape evolution. Institute of Science and Technology Austria.
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2020 | Published | Preprint | IST-REx-ID: 7675 |
Grah R, Zoller B, Tkačik G. 2020. Normative models of enhancer function. bioRxiv, 10.1101/2020.04.08.029405.
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2020 | Published | Journal Article | IST-REx-ID: 8955 |
Rizzo R, Zhang X, Wang JWJL, Lombardi F, Ivanov PC. 2020. Network physiology of cortico–muscular interactions. Frontiers in Physiology. 11, 558070.
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2020 | Published | Journal Article | IST-REx-ID: 8084 |
Lombardi F, Gómez-Extremera M, Bernaola-Galván P, Vetrivelan R, Saper CB, Scammell TE, Ivanov PC. 2020. Critical dynamics and coupling in bursts of cortical rhythms indicate non-homeostatic mechanism for sleep-stage transitions and dual role of VLPO neurons in both sleep and wake. Journal of Neuroscience. 40(1), 171–190.
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2020 | Research Data | IST-REx-ID: 8930 |
Kavcic B. 2020. Analysis scripts and research data for the paper ‘Minimal biophysical model of combined antibiotic action’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:8930.
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2020 | Published | Journal Article | IST-REx-ID: 7490 |
Narasimhan M, Johnson AJ, Prizak R, Kaufmann W, Tan S, Casillas Perez BE, Friml J. 2020. Evolutionarily unique mechanistic framework of clathrin-mediated endocytosis in plants. eLife. 9, e52067.
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2020 | Published | Journal Article | IST-REx-ID: 7652 |
Tomanek I, Grah R, Lagator M, Andersson AMC, Bollback JP, Tkačik G, Guet CC. 2020. Gene amplification as a form of population-level gene expression regulation. Nature Ecology & Evolution. 4(4), 612–625.
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2020 | Published | Thesis | IST-REx-ID: 8657 |
Kavcic B. 2020. Perturbations of protein synthesis: from antibiotics to genetics and physiology. Institute of Science and Technology Austria.
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2020 | Published | Journal Article | IST-REx-ID: 8250 |
Kavcic B, Tkačik G, Bollenbach MT. 2020. Mechanisms of drug interactions between translation-inhibiting antibiotics. Nature Communications. 11, 4013.
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2020 | Published | Preprint | IST-REx-ID: 7673 |
Kavcic B, Tkačik G, Bollenbach MT. 2020. A minimal biophysical model of combined antibiotic action. bioRxiv, 10.1101/2020.04.18.047886.
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2019 | Published | Journal Article | IST-REx-ID: 5817 |
Kavcic B, Sakashita A, Noguchi H, Ziherl P. 2019. Limiting shapes of confined lipid vesicles. Soft Matter. 15(4), 602–614.
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2019 | Published | Journal Article | IST-REx-ID: 6090 |
Carballo-Pacheco M, Desponds J, Gavrilchenko T, Mayer A, Prizak R, Reddy G, Nemenman I, Mora T. 2019. Receptor crosstalk improves concentration sensing of multiple ligands. Physical Review E. 99(2), 022423.
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2019 | Published | Journal Article | IST-REx-ID: 7422 |
Sokolowski TR, Paijmans J, Bossen L, Miedema T, Wehrens M, Becker NB, Kaizu K, Takahashi K, Dogterom M, ten Wolde PR. 2019. eGFRD in all dimensions. The Journal of Chemical Physics. 150(5), 054108.
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| arXiv
2019 | Published | Journal Article | IST-REx-ID: 196 |
Lang, Moritz, Harmonic dynamics of the Abelian sandpile. Proceedings of the National Academy of Sciences of the United States of America 116 (8). 2019
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| arXiv
2019 | Published | Journal Article | IST-REx-ID: 6900 |
Cepeda Humerez SA, Ruess J, Tkačik G. 2019. Estimating information in time-varying signals. PLoS computational biology. 15(9), e1007290.
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2019 | Published | Journal Article | IST-REx-ID: 5945 |
Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. 2019. Optimal decoding of cellular identities in a genetic network. Cell. 176(4), 844–855.e15.
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2019 | Submitted | Preprint | IST-REx-ID: 7552 |
Bialek W, Gregor T, Tkačik G. Action at a distance in transcriptional regulation. arXiv:1912.08579, .
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2019 | Published | Journal Article | IST-REx-ID: 6049 |
De Martino D. 2019. Feedback-induced self-oscillations in large interacting systems subjected to phase transitions. Journal of Physics A: Mathematical and Theoretical. 52(4), 045002.
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2019 | Published | Journal Article | IST-REx-ID: 7103 |
Wang JWJL, Lombardi F, Zhang X, Anaclet C, Ivanov PC. 2019. Non-equilibrium critical dynamics of bursts in θ and δ rhythms as fundamental characteristic of sleep and wake micro-architecture. PLoS Computational Biology. 15(11), e1007268.
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2019 | Published | Thesis | IST-REx-ID: 6473 |
Cepeda Humerez SA. 2019. Estimating information flow in single cells. Institute of Science and Technology Austria.
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