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4165 Publications

2016 | Journal Article | IST-REx-ID: 1008
An orthogonal permease–inducer–repressor feedback loop shows bistability
R. Gnügge, L. Dharmarajan, M. Lang, J. Stelling, ACS Synthetic Biology 5 (2016) 1098–1107.
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2016 | Journal Article | IST-REx-ID: 9456 | OA
Mechanism for DNA transposons to generate introns on genomic scales
J.T. Huff, D. Zilberman, S.W. Roy, Nature 538 (2016) 533–536.
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2016 | Journal Article | IST-REx-ID: 9473 | OA
Arabidopsis male sexual lineage exhibits more robust maintenance of CG methylation than somatic tissues
P.-H. Hsieh, S. He, T. Buttress, H. Gao, M. Couchman, R.L. Fischer, D. Zilberman, X. Feng, Proceedings of the National Academy of Sciences 113 (2016) 15132–15137.
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2016 | Journal Article | IST-REx-ID: 9477 | OA
DNA demethylation is initiated in the central cells of Arabidopsis and rice
K. Park, M.Y. Kim, M. Vickers, J.-S. Park, Y. Hyun, T. Okamoto, D. Zilberman, R.L. Fischer, X. Feng, Y. Choi, S. Scholten, Proceedings of the National Academy of Sciences 113 (2016) 15138–15143.
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2016 | Conference Paper | IST-REx-ID: 948
Neurons equipped with intrinsic plasticity learn stimulus intensity statistics
T. Monk, C. Savin, J. Lücke, in:, Neural Information Processing Systems, 2016, pp. 4285–4293.
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2016 | Research Data Reference | IST-REx-ID: 9862
Simulation study to test the robustness of ABC in face of recent times of divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9863
Accessions of surveyed individuals, geographic locations and summary statistics
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9866
ZIP-archived directory containing all data and computer programs
M.P. Zagórski, Z. Burda, B. Wacław, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9867
Experimental game instructions
C. Hilbe, K. Hagel, M. Milinski, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9868
Experimental data
C. Hilbe, K. Hagel, M. Milinski, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9869
Error bound on an estimator of position
P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9870
Computation of positional information in an Ising model
P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9871
Computation of positional information in a discrete morphogen field
P. Hillenbrand, U. Gerland, G. Tkačik, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9873
Quantification of the growth rate reduction as a consequence of age-specific mortality
A. Boehm, M. Arnoldini, T. Bergmiller, T. Röösli, C. Bigosch, M. Ackermann, (2016).
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2016 | Journal Article | IST-REx-ID: 1518 | OA
Efficient strategies for calculating blockwise likelihoods under the coalescent
K. Lohse, M. Chmelik, S. Martin, N.H. Barton, Genetics 202 (2016) 775–786.
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2016 | Journal Article | IST-REx-ID: 1331 | OA
Cytokinin response factor 6 represses cytokinin-associated genes during oxidative stress
P. Zwack, I. De Clercq, T. Howton, H.T. Hallmark, A. Hurny, E. Keshishian, A. Parish, E. Benková, M.S. Mukhtar, F. Van Breusegem, A. Rashotte, Plant Physiology 172 (2016) 1249–1258.
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2016 | Journal Article | IST-REx-ID: 1252 | OA
Inducing a map on homology from a correspondence
S. Harker, H. Kokubu, K. Mischaikow, P. Pilarczyk, Proceedings of the American Mathematical Society 144 (2016) 1787–1801.
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2016 | Journal Article | IST-REx-ID: 1420 | OA
A general approximation for the dynamics of quantitative traits
K. Bodova, G. Tkačik, N.H. Barton, Genetics 202 (2016) 1523–1548.
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2016 | Conference Paper | IST-REx-ID: 1068 | OA
Conditionally optimal algorithms for generalized Büchi Games
K. Chatterjee, W. Dvorák, M.H. Henzinger, V. Loitzenbauer, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2016.
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2016 | Journal Article | IST-REx-ID: 1262 | OA
Elevated virulence of an emerging viral genotype as a driver of honeybee loss
D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).
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2016 | Research Data Reference | IST-REx-ID: 9704 | OA
Data from: Elevated virulence of an emerging viral genotype as a driver of honeybee loss
D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, (2016).
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2016 | Journal Article | IST-REx-ID: 1197 | OA
Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, PLoS Computational Biology 12 (2016).
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2016 | Journal Article | IST-REx-ID: 5749 | OA
Adaptation to parasites and costs of parasite resistance in mutator and nonmutator bacteria
S. Wielgoss, T. Bergmiller, A.M. Bischofberger, A.R. Hall, Molecular Biology and Evolution 33 (2016) 770–782.
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2016 | Research Data Reference | IST-REx-ID: 9720 | OA
Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees
D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).
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2016 | Research Data Reference | IST-REx-ID: 9710 | OA
Data from: How does epistasis influence the response to selection?
N.H. Barton, (2016).
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2016 | Journal Article | IST-REx-ID: 1373 | OA
Network architectures and operating principles. Reply to comments on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function"
O. Martin, M.P. Zagórski, Physics of Life Reviews 17 (2016) 168–171.
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2016 | Research Data Reference | IST-REx-ID: 9864 | OA
Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the ϕX174 phage family
R.A. Fernandes Redondo, H. de Vladar, T. Włodarski, J.P. Bollback, (2016).
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2016 | Conference Paper | IST-REx-ID: 1115 | OA
Efficient single sideband microwave to optical conversion using a LiNbO₃ WGM-resonator
A. Rueda, F. Sedlmeir, M. Collodo, U. Vogl, B. Stiller, G. Schunk, D. Strekalov, C. Marquardt, J.M. Fink, O. Painter, G. Leuchs, H. Schwefel, in:, IEEE, 2016.
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2016 | Conference Paper | IST-REx-ID: 1140 | OA
Model and objective separation with conditional lower bounds: disjunction is harder than conjunction
K. Chatterjee, W. Dvoák, M.H. Henzinger, V. Loitzenbauer, in:, Proceedings of the 31st Annual ACM/IEEE Symposium on Logic in Computer Science, IEEE, 2016, pp. 197–206.
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2016 | Journal Article | IST-REx-ID: 1321 | OA
Diversified actin protrusions promote environmental exploration but are dispensable for locomotion of leukocytes
A.F. Leithner, A. Eichner, J. Müller, A. REVERSAT, M. Brown, J. Schwarz, J. Merrin, D. De Gorter, F.K. Schur, J. Bayerl, I. de Vries, S. Wieser, R. Hauschild, F. Lai, M. Moser, D. Kerjaschki, K. Rottner, V. Small, T. Stradal, M.K. Sixt, Nature Cell Biology 18 (2016) 1253–1259.
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2016 | Journal Article | IST-REx-ID: 1183 | OA
Impaired amino acid transport at the blood brain barrier is a cause of autism spectrum disorder
Tarlungeanu D-C, Deliu E, Dotter C, Kara M, Janiesch P, Scalise M, Galluccio M, Tesulov M, Morelli E, Sönmez F, Bilgüvar K, Ohgaki R, Kanai Y, Johansen A, Esharif S, Ben Omran T, Topcu M, Schlessinger A, Indiveri C, Duncan K, Caglayan A, Günel M, Gleeson J, Novarino G. 2016. Impaired amino acid transport at the blood brain barrier is a cause of autism spectrum disorder. Cell. 167(6), 1481–1494.
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2016 | Journal Article | IST-REx-ID: 1100 | OA
Optogenetic control of nodal signaling reveals a temporal pattern of nodal signaling regulating cell fate specification during gastrulation
K. Sako, S. Pradhan, V. Barone, Á. Inglés Prieto, P. Mueller, V. Ruprecht, D. Capek, S. Galande, H.L. Janovjak, C.-P.J. Heisenberg, Cell Reports 16 (2016) 866–877.
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2016 | Conference Paper | IST-REx-ID: 1437 | OA
Algorithms for algebraic path properties in concurrent systems of constant treewidth components
K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, ACM, 2016, pp. 733–747.
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2016 | Conference Paper | IST-REx-ID: 1386 | OA
Termination analysis of probabilistic programs through Positivstellensatz's
K. Chatterjee, H. Fu, A.K. Goharshady, in:, Springer, 2016, pp. 3–22.
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2015 | Journal Article | IST-REx-ID: 802
Characterization of an N-acetylglucosaminyltransferase involved in Aspergillus fumigatus zwitterionic glycoinositolphosphoceramide biosynthesis
J. Engel, P.S. Schmalhorst, A. Kruger, C. Muller, F. Buettner, F. Routier, Glycobiology 25 (2015) 1423–1430.
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2015 | Journal Article | IST-REx-ID: 473 | OA
Derivation of nonlinear gibbs measures from many-body quantum mechanics
M. Lewin, P. Nam, N. Rougerie, Journal de l’Ecole Polytechnique - Mathematiques 2 (2015) 65–115.
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2015 | Journal Article | IST-REx-ID: 477
The serotonin receptor 5-HT7R regulates the morphology and migratory properties of dendritic cells
K. Holst, D. Guseva, S. Schindler, M.K. Sixt, A. Braun, H. Chopra, O. Pabst, E. Ponimaskin, Journal of Cell Science 128 (2015) 2866–2880.
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2015 | Journal Article | IST-REx-ID: 523 | OA
Looking at mean-payoff and total-payoff through windows
K. Chatterjee, L. Doyen, M. Randour, J. Raskin, Information and Computation 242 (2015) 25–52.
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2015 | Journal Article | IST-REx-ID: 524 | OA
Qualitative analysis of concurrent mean payoff games
K. Chatterjee, R. Ibsen-Jensen, Information and Computation 242 (2015) 2–24.
View | Files available | DOI | Download Preprint (ext.) | arXiv
 
2015 | Journal Article | IST-REx-ID: 532
EIN2-directed translational regulation of ethylene signaling in arabidopsis
W. Li, M. Ma, Y. Feng, H. Li, Y. Wang, Y. Ma, M. Li, F. An, H. Guo, Cell 163 (2015) 670–683.
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2015 | Technical Report | IST-REx-ID: 5429 | OA
Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5430 | OA
Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5431 | OA
The patience of concurrent stochastic games with safety and reachability objectives
K. Chatterjee, R. Ibsen-Jensen, K. Hansen, The Patience of Concurrent Stochastic Games with Safety and Reachability Objectives, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5432 | OA
The complexity of evolutionary games on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary Games on Graphs, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5435 | OA
Unifying two views on multiple mean-payoff objectives in Markov decision processes
K. Chatterjee, Z. Komarkova, J. Kretinsky, Unifying Two Views on Multiple Mean-Payoff Objectives in Markov Decision Processes, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5436 | OA
Nested weighted automata
K. Chatterjee, T.A. Henzinger, J. Otop, Nested Weighted Automata, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5437 | OA
Faster algorithms for quantitative verification in constant treewidth graphs
K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Faster Algorithms for Quantitative Verification in Constant Treewidth Graphs, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5438 | OA
Edit distance for pushdown automata
K. Chatterjee, T.A. Henzinger, R. Ibsen-Jensen, J. Otop, Edit Distance for Pushdown Automata, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5439 | OA
The target discounted-sum problem
U. Boker, T.A. Henzinger, J. Otop, The Target Discounted-Sum Problem, IST Austria, 2015.
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2015 | Technical Report | IST-REx-ID: 5440 | OA
The complexity of evolutionary games on graphs
K. Chatterjee, R. Ibsen-Jensen, M. Nowak, The Complexity of Evolutionary Games on Graphs, IST Austria, 2015.
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