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5872 Publications
2020 | Published | Journal Article | IST-REx-ID: 7968 |

Analytic model of chiral-induced spin selectivity
A. Ghazaryan, Y. Paltiel, M. Lemeshko, The Journal of Physical Chemistry C 124 (2020) 11716–11721.
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A. Ghazaryan, Y. Paltiel, M. Lemeshko, The Journal of Physical Chemistry C 124 (2020) 11716–11721.
2020 | Published | Journal Article | IST-REx-ID: 8105 |

Power-law correlations and coupling of active and quiet states underlie a class of complex systems with self-organization at criticality
F. Lombardi, J.W.J.L. Wang, X. Zhang, P.C. Ivanov, EPJ Web of Conferences 230 (2020).
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F. Lombardi, J.W.J.L. Wang, X. Zhang, P.C. Ivanov, EPJ Web of Conferences 230 (2020).
2020 | Published | Conference Paper | IST-REx-ID: 9001 |

Microwave quantum illumination with a digital phase-conjugated receiver
S. Barzanjeh, S. Pirandola, D. Vitali, J.M. Fink, in:, IEEE National Radar Conference - Proceedings, IEEE, 2020.
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S. Barzanjeh, S. Pirandola, D. Vitali, J.M. Fink, in:, IEEE National Radar Conference - Proceedings, IEEE, 2020.
2020 | Published | Journal Article | IST-REx-ID: 7932 |

Nonlinear hydrodynamic instability and turbulence in pulsatile flow
D. Xu, A. Varshney, X. Ma, B. Song, M. Riedl, M. Avila, B. Hof, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 11233–11239.
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D. Xu, A. Varshney, X. Ma, B. Song, M. Riedl, M. Avila, B. Hof, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 11233–11239.
2020 | Published | Journal Article | IST-REx-ID: 9196 |

Modelled distributions of Triebel–Lizorkin type
S. Hensel, T. Rosati, Studia Mathematica 252 (2020) 251–297.
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S. Hensel, T. Rosati, Studia Mathematica 252 (2020) 251–297.
2020 | Published | Journal Article | IST-REx-ID: 8112 |

On the completion of speciation
N.H. Barton, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
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N.H. Barton, Philosophical Transactions of the Royal Society. Series B: Biological Sciences 375 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8271 |

Origin of a subgenome and genome evolution of allotetraploid cotton species
P. He, Y. Zhang, G. Xiao, Molecular Plant 13 (2020) 1238–1240.
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P. He, Y. Zhang, G. Xiao, Molecular Plant 13 (2020) 1238–1240.
2020 | Published | Conference Paper | IST-REx-ID: 7635 |

Testing concurrency on the JVM with Lincheck
N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2020, pp. 423–424.
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N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2020, pp. 423–424.
2020 | Published | Journal Article | IST-REx-ID: 7686
Neo-gibberellin signaling: Guiding the next generation of the green revolution
H. Xue, Y. Zhang, G. Xiao, Trends in Plant Science 25 (2020) 520–522.
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H. Xue, Y. Zhang, G. Xiao, Trends in Plant Science 25 (2020) 520–522.
2020 | Published | Thesis | IST-REx-ID: 7514 |

The free energy of a dilute two-dimensional Bose gas
S. Mayer, The Free Energy of a Dilute Two-Dimensional Bose Gas, Institute of Science and Technology Austria, 2020.
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S. Mayer, The Free Energy of a Dilute Two-Dimensional Bose Gas, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 7790 |

The free energy of the two-dimensional dilute Bose gas. I. Lower bound
A. Deuchert, S. Mayer, R. Seiringer, Forum of Mathematics, Sigma 8 (2020).
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A. Deuchert, S. Mayer, R. Seiringer, Forum of Mathematics, Sigma 8 (2020).
2020 | Published | Thesis | IST-REx-ID: 8156 |

Topological methods in geometry and discrete mathematics
S. Avvakumov, Topological Methods in Geometry and Discrete Mathematics, Institute of Science and Technology Austria, 2020.
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S. Avvakumov, Topological Methods in Geometry and Discrete Mathematics, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 9308 |

Eliminating higher-multiplicity intersections, III. Codimension 2
S. Avvakumov, U. Wagner, I. Mabillard, A.B. Skopenkov, Russian Mathematical Surveys 75 (2020) 1156–1158.
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S. Avvakumov, U. Wagner, I. Mabillard, A.B. Skopenkov, Russian Mathematical Surveys 75 (2020) 1156–1158.
2020 | Published | Conference Paper | IST-REx-ID: 8724 |

On the sample complexity of adversarial multi-source PAC learning
N.H. Konstantinov, E. Frantar, D.-A. Alistarh, C. Lampert, in:, Proceedings of the 37th International Conference on Machine Learning, ML Research Press, 2020, pp. 5416–5425.
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N.H. Konstantinov, E. Frantar, D.-A. Alistarh, C. Lampert, in:, Proceedings of the 37th International Conference on Machine Learning, ML Research Press, 2020, pp. 5416–5425.
2020 | Published | Conference Paper | IST-REx-ID: 7481 |

Functional vs. parametric equivalence of ReLU networks
M. Phuong, C. Lampert, in:, 8th International Conference on Learning Representations, 2020.
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M. Phuong, C. Lampert, in:, 8th International Conference on Learning Representations, 2020.
2020 | Published | Thesis | IST-REx-ID: 7680 |

Synthetic tools for optogenetic and chemogenetic inhibition of cellular signals
S. Kainrath, Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals, Institute of Science and Technology Austria, 2020.
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S. Kainrath, Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals, Institute of Science and Technology Austria, 2020.
2020 | Published | Conference Paper | IST-REx-ID: 9633 |

A meta-learning approach to (re)discover plasticity rules that carve a desired function into a neural network
B.J. Confavreux, F. Zenke, E.J. Agnes, T. Lillicrap, T.P. Vogels, in:, Advances in Neural Information Processing Systems, 2020, pp. 16398–16408.
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B.J. Confavreux, F. Zenke, E.J. Agnes, T. Lillicrap, T.P. Vogels, in:, Advances in Neural Information Processing Systems, 2020, pp. 16398–16408.
2020 | Published | Thesis | IST-REx-ID: 8620 |

Illuminating the role of Cul3 in autism spectrum disorder pathogenesis
J. Morandell, Illuminating the Role of Cul3 in Autism Spectrum Disorder Pathogenesis, Institute of Science and Technology Austria, 2020.
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J. Morandell, Illuminating the Role of Cul3 in Autism Spectrum Disorder Pathogenesis, Institute of Science and Technology Austria, 2020.
2020 | Draft | Preprint | IST-REx-ID: 7800 |

Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development
J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, A. Nicolas, C.M. Sommer, C. Kreuzinger, L. Knaus, Z. Dobler, E. Cacci, J.G. Danzl, G. Novarino, BioRxiv (n.d.).
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J. Morandell, L.A. Schwarz, B. Basilico, S. Tasciyan, A. Nicolas, C.M. Sommer, C. Kreuzinger, L. Knaus, Z. Dobler, E. Cacci, J.G. Danzl, G. Novarino, BioRxiv (n.d.).
2020 | Published | Journal Article | IST-REx-ID: 9160 |

All roads lead to auxin: Post-translational regulation of auxin transport by multiple hormonal pathways
H. Semerádová, J.C. Montesinos López, E. Benková, Plant Communications 1 (2020).
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H. Semerádová, J.C. Montesinos López, E. Benková, Plant Communications 1 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8131 |

Molecular mechanisms for targeted ASD treatments
B. Basilico, J. Morandell, G. Novarino, Current Opinion in Genetics and Development 65 (2020) 126–137.
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B. Basilico, J. Morandell, G. Novarino, Current Opinion in Genetics and Development 65 (2020) 126–137.
2020 | Published | Thesis | IST-REx-ID: 8983 |

Metabolic regulation of Drosophila macrophage tissue invasion
S. Emtenani, Metabolic Regulation of Drosophila Macrophage Tissue Invasion, Institute of Science and Technology Austria, 2020.
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S. Emtenani, Metabolic Regulation of Drosophila Macrophage Tissue Invasion, Institute of Science and Technology Austria, 2020.
2020 | Draft | Preprint | IST-REx-ID: 8831 |

Enhancement of proximity induced superconductivity in planar Germanium
K. Aggarwal, A.C. Hofmann, D. Jirovec, I. Prieto Gonzalez, A. Sammak, M. Botifoll, S. Marti-Sanchez, M. Veldhorst, J. Arbiol, G. Scappucci, G. Katsaros, ArXiv (n.d.).
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K. Aggarwal, A.C. Hofmann, D. Jirovec, I. Prieto Gonzalez, A. Sammak, M. Botifoll, S. Marti-Sanchez, M. Veldhorst, J. Arbiol, G. Scappucci, G. Katsaros, ArXiv (n.d.).
2020 | Draft | Preprint | IST-REx-ID: 8557 |

Cortical actin properties controlled by Drosophila Fos aid macrophage infiltration against surrounding tissue resistance
V. Belyaeva, S. Wachner, I. Gridchyn, M. Linder, S. Emtenani, A. György, M. Sibilia, D.E. Siekhaus, BioRxiv (n.d.).
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V. Belyaeva, S. Wachner, I. Gridchyn, M. Linder, S. Emtenani, A. György, M. Sibilia, D.E. Siekhaus, BioRxiv (n.d.).
2020 | Published | Journal Article | IST-REx-ID: 8586 |

3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy
F. Fäßler, B. Zens, R. Hauschild, F.K. Schur, Journal of Structural Biology 212 (2020).
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F. Fäßler, B. Zens, R. Hauschild, F.K. Schur, Journal of Structural Biology 212 (2020).
2020 | Published | Journal Article | IST-REx-ID: 7889 |

Plants with genetically encoded autoluminescence
Mitiouchkina T, Mishin AS, Gonzalez Somermeyer L, Markina NM, Chepurnyh TV, Guglya EB, Karataeva TA, Palkina KA, Shakhova ES, Fakhranurova LI, Chekova SV, Tsarkova AS, Golubev YV, Negrebetsky VV, Dolgushin SA, Shalaev PV, Shlykov D, Melnik OA, Shipunova VO, Deyev SM, Bubyrev AI, Pushin AS, Choob VV, Dolgov SV, Kondrashov F, Yampolsky IV, Sarkisyan KS. 2020. Plants with genetically encoded autoluminescence. Nature Biotechnology. 38, 944–946.
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Mitiouchkina T, Mishin AS, Gonzalez Somermeyer L, Markina NM, Chepurnyh TV, Guglya EB, Karataeva TA, Palkina KA, Shakhova ES, Fakhranurova LI, Chekova SV, Tsarkova AS, Golubev YV, Negrebetsky VV, Dolgushin SA, Shalaev PV, Shlykov D, Melnik OA, Shipunova VO, Deyev SM, Bubyrev AI, Pushin AS, Choob VV, Dolgov SV, Kondrashov F, Yampolsky IV, Sarkisyan KS. 2020. Plants with genetically encoded autoluminescence. Nature Biotechnology. 38, 944–946.
2020 | Published | Journal Article | IST-REx-ID: 7888 |

Zebrafish embryonic explants undergo genetically encoded self-assembly
A. Schauer, D.C. Nunes Pinheiro, R. Hauschild, C.-P.J. Heisenberg, ELife 9 (2020).
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A. Schauer, D.C. Nunes Pinheiro, R. Hauschild, C.-P.J. Heisenberg, ELife 9 (2020).
2020 | Published | Journal Article | IST-REx-ID: 7473 |

Functional electron microscopy (“Flash and Freeze”) of identified cortical synapses in acute brain slices
C. Borges Merjane, O. Kim, P.M. Jonas, Neuron 105 (2020) 992–1006.
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C. Borges Merjane, O. Kim, P.M. Jonas, Neuron 105 (2020) 992–1006.
2020 | Published | Thesis | IST-REx-ID: 8657 |

Perturbations of protein synthesis: from antibiotics to genetics and physiology
B. Kavcic, Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology, Institute of Science and Technology Austria, 2020.
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B. Kavcic, Perturbations of Protein Synthesis: From Antibiotics to Genetics and Physiology, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 8250 |

Mechanisms of drug interactions between translation-inhibiting antibiotics
B. Kavcic, G. Tkačik, M.T. Bollenbach, Nature Communications 11 (2020).
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B. Kavcic, G. Tkačik, M.T. Bollenbach, Nature Communications 11 (2020).
2020 | Published | Preprint | IST-REx-ID: 7673 |

A minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, M.T. Bollenbach, BioRxiv (2020).
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B. Kavcic, G. Tkačik, M.T. Bollenbach, BioRxiv (2020).
2020 | Published | Journal Article | IST-REx-ID: 7815 |

Lineage tracing and clonal analysis in developing cerebral cortex using mosaic analysis with double markers (MADM)
R.J. Beattie, C. Streicher, N. Amberg, G.T. Cheung, X. Contreras, A.H. Hansen, S. Hippenmeyer, Journal of Visual Experiments (2020).
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R.J. Beattie, C. Streicher, N. Amberg, G.T. Cheung, X. Contreras, A.H. Hansen, S. Hippenmeyer, Journal of Visual Experiments (2020).
2020 | Published | Thesis | IST-REx-ID: 7902 |

Genetic dissection of neural development in health and disease at single cell resolution
X. Contreras, Genetic Dissection of Neural Development in Health and Disease at Single Cell Resolution, Institute of Science and Technology Austria, 2020.
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X. Contreras, Genetic Dissection of Neural Development in Health and Disease at Single Cell Resolution, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 7652 |

Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
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I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
2020 | Published | Thesis | IST-REx-ID: 8653 |

The evolution of gene expression by copy number and point mutations
I. Tomanek, The Evolution of Gene Expression by Copy Number and Point Mutations, Institute of Science and Technology Austria, 2020.
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I. Tomanek, The Evolution of Gene Expression by Copy Number and Point Mutations, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 8707 |

CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.
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S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.
2020 | Published | Thesis | IST-REx-ID: 7525 |

Localization and functional role of Cav2.3 in the medial habenula to interpeduncular nucleus pathway
P. Bhandari, Localization and Functional Role of Cav2.3 in the Medial Habenula to Interpeduncular Nucleus Pathway, Institute of Science and Technology Austria, 2020.
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P. Bhandari, Localization and Functional Role of Cav2.3 in the Medial Habenula to Interpeduncular Nucleus Pathway, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 7427 |

Salicylic acid targets protein phosphatase 2A to attenuate growth in plants
S. Tan, M.F. Abas, I. Verstraeten, M. Glanc, G. Molnar, J. Hajny, P. Lasák, I. Petřík, E. Russinova, J. Petrášek, O. Novák, J. Pospíšil, J. Friml, Current Biology 30 (2020) 381–395.e8.
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S. Tan, M.F. Abas, I. Verstraeten, M. Glanc, G. Molnar, J. Hajny, P. Lasák, I. Petřík, E. Russinova, J. Petrášek, O. Novák, J. Pospíšil, J. Friml, Current Biology 30 (2020) 381–395.e8.
2020 | Published | Journal Article | IST-REx-ID: 7500 |

Auxin canalization and vascular tissue formation by TIR1/AFB-mediated auxin signaling in arabidopsis
E. Mazur, I. Kulik, J. Hajny, J. Friml, New Phytologist 226 (2020) 1375–1383.
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E. Mazur, I. Kulik, J. Hajny, J. Friml, New Phytologist 226 (2020) 1375–1383.
2020 | Published | Thesis | IST-REx-ID: 8822 |

Identification and characterization of the molecular machinery of auxin-dependent canalization during vasculature formation and regeneration
J. Hajny, Identification and Characterization of the Molecular Machinery of Auxin-Dependent Canalization during Vasculature Formation and Regeneration, Institute of Science and Technology Austria, 2020.
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J. Hajny, Identification and Characterization of the Molecular Machinery of Auxin-Dependent Canalization during Vasculature Formation and Regeneration, Institute of Science and Technology Austria, 2020.
2020 | Published | Journal Article | IST-REx-ID: 8190 |

Zena Werb (1945-2020): Cell biology in context
M.K. Sixt, A. Huttenlocher, The Journal of Cell Biology 219 (2020).
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M.K. Sixt, A. Huttenlocher, The Journal of Cell Biology 219 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8986 |

Functional innovations of PIN auxin transporters mark crucial evolutionary transitions during rise of flowering plants
Y. Zhang, L. Rodriguez Solovey, L. Li, X. Zhang, J. Friml, Science Advances 6 (2020).
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Y. Zhang, L. Rodriguez Solovey, L. Li, X. Zhang, J. Friml, Science Advances 6 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8283 |

AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling
Chen, Huihuang, AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling. International Journal of Molecular Sciences 21 (16). 2020
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Chen, Huihuang, AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling. International Journal of Molecular Sciences 21 (16). 2020
2020 | Published | Journal Article | IST-REx-ID: 8532 |

Deep learning-assisted high-throughput analysis of freeze-fracture replica images applied to glutamate receptors and calcium channels at hippocampal synapses
Kleindienst, David, Deep learning-assisted high-throughput analysis of freeze-fracture replica images applied to glutamate receptors and calcium channels at hippocampal synapses. International Journal of Molecular Sciences 21 (18). 2020
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Kleindienst, David, Deep learning-assisted high-throughput analysis of freeze-fracture replica images applied to glutamate receptors and calcium channels at hippocampal synapses. International Journal of Molecular Sciences 21 (18). 2020
2020 | Published | Journal Article | IST-REx-ID: 7161 |

Inertial projection-type methods for solving quasi-variational inequalities in real Hilbert spaces
Y. Shehu, A. Gibali, S. Sagratella, Journal of Optimization Theory and Applications 184 (2020) 877–894.
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Y. Shehu, A. Gibali, S. Sagratella, Journal of Optimization Theory and Applications 184 (2020) 877–894.
2020 | Published | Journal Article | IST-REx-ID: 8002 |

Wounding-induced changes in cellular pressure and localized auxin signalling spatially coordinate restorative divisions in roots
L. Hörmayer, J.C. Montesinos López, P. Marhavá, E. Benková, S. Yoshida, J. Friml, Proceedings of the National Academy of Sciences of the United States of America 117 (2020).
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L. Hörmayer, J.C. Montesinos López, P. Marhavá, E. Benková, S. Yoshida, J. Friml, Proceedings of the National Academy of Sciences of the United States of America 117 (2020).
2020 | Published | Journal Article | IST-REx-ID: 8139 |

Experimental toolbox for quantitative evaluation of clathrin-mediated endocytosis in the plant model Arabidopsis
A.J. Johnson, N. Gnyliukh, W. Kaufmann, M. Narasimhan, G. Vert, S. Bednarek, J. Friml, Journal of Cell Science 133 (2020).
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A.J. Johnson, N. Gnyliukh, W. Kaufmann, M. Narasimhan, G. Vert, S. Bednarek, J. Friml, Journal of Cell Science 133 (2020).
2020 | Published | Journal Article | IST-REx-ID: 6918 |

An efficient algorithm for computing network reliability in small treewidth
A.K. Goharshady, F. Mohammadi, Reliability Engineering and System Safety 193 (2020).
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A.K. Goharshady, F. Mohammadi, Reliability Engineering and System Safety 193 (2020).
2020 | Published | Conference Paper | IST-REx-ID: 7810 |

Optimal and perfectly parallel algorithms for on-demand data-flow analysis
K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, European Symposium on Programming, Springer Nature, 2020, pp. 112–140.
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K. Chatterjee, A.K. Goharshady, R. Ibsen-Jensen, A. Pavlogiannis, in:, European Symposium on Programming, Springer Nature, 2020, pp. 112–140.
2020 | Published | Conference Paper | IST-REx-ID: 8728 |

Faster algorithms for quantitative analysis of MCs and MDPs with small treewidth
A. Asadi, K. Chatterjee, A.K. Goharshady, K. Mohammadi, A. Pavlogiannis, in:, Automated Technology for Verification and Analysis, Springer Nature, 2020, pp. 253–270.
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A. Asadi, K. Chatterjee, A.K. Goharshady, K. Mohammadi, A. Pavlogiannis, in:, Automated Technology for Verification and Analysis, Springer Nature, 2020, pp. 253–270.