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5779 Publications
2022 | Published | Journal Article | IST-REx-ID: 17071
AI-based structure prediction empowers integrative structural analysis of human nuclear pores
S. Mosalaganti, A. Obarska-Kosinska, M. Siggel, R. Taniguchi, B. Turoňová, C.E. Zimmerli, K. Buczak, F. Schmidt, E. Margiotta, M.-T. Mackmull, W.J.H. Hagen, G. Hummer, J. Kosinski, M. Beck, Science 376 (2022).
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S. Mosalaganti, A. Obarska-Kosinska, M. Siggel, R. Taniguchi, B. Turoňová, C.E. Zimmerli, K. Buczak, F. Schmidt, E. Margiotta, M.-T. Mackmull, W.J.H. Hagen, G. Hummer, J. Kosinski, M. Beck, Science 376 (2022).
2022 | Published | Journal Article | IST-REx-ID: 17072 |

Protein chain collapse modulation and folding stimulation by GroEL-ES
M.M. Naqvi, M. Avellaneda Sarrió, A. Roth, E.J. Koers, A. Roland, V. Sunderlikova, G. Kramer, H.S. Rye, S.J. Tans, Science Advances 8 (2022).
[Published Version]
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M.M. Naqvi, M. Avellaneda Sarrió, A. Roth, E.J. Koers, A. Roland, V. Sunderlikova, G. Kramer, H.S. Rye, S.J. Tans, Science Advances 8 (2022).
2022 | Published | Book Chapter | IST-REx-ID: 17075
Amino Acid Transport Defects
M. Palacín, S. Bröer, G. Novarino, in:, N. Blau, C.D. Vici, C.R. Ferreira, C. Vianey-Saban, C.D.M. van Karnebeek (Eds.), Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases, 2nd ed., Springer Nature, Cham, 2022, pp. 291–312.
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M. Palacín, S. Bröer, G. Novarino, in:, N. Blau, C.D. Vici, C.R. Ferreira, C. Vianey-Saban, C.D.M. van Karnebeek (Eds.), Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases, 2nd ed., Springer Nature, Cham, 2022, pp. 291–312.
2022 | Published | Journal Article | IST-REx-ID: 17076 |

Genome‐ and epigenome‐wide studies of plasma protein biomarkers for Alzheimer's disease implicate TBCA and TREM2 in disease risk
R.F. Hillary, D.A. Gadd, D.L. McCartney, L. Shi, A. Campbell, R.M. Walker, C.W. Ritchie, I.J. Deary, K.L. Evans, A.J. Nevado‐Holgado, C. Hayward, D.J. Porteous, A.M. McIntosh, S. Lovestone, M.R. Robinson, R.E. Marioni, Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring 14 (2022).
[Published Version]
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R.F. Hillary, D.A. Gadd, D.L. McCartney, L. Shi, A. Campbell, R.M. Walker, C.W. Ritchie, I.J. Deary, K.L. Evans, A.J. Nevado‐Holgado, C. Hayward, D.J. Porteous, A.M. McIntosh, S. Lovestone, M.R. Robinson, R.E. Marioni, Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring 14 (2022).
2022 | Published | Journal Article | IST-REx-ID: 17077 |

Friendly bisections of random graphs
A. Ferber, M.A. Kwan, B. Narayanan, A. Sah, M. Sawhney, Communications of the American Mathematical Society 2 (2022) 380–416.
[Published Version]
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A. Ferber, M.A. Kwan, B. Narayanan, A. Sah, M. Sawhney, Communications of the American Mathematical Society 2 (2022) 380–416.
2022 | Published | Conference Paper | IST-REx-ID: 17086 |

Mean estimation in high-dimensional binary Markov Gaussian mixture models
Y. Zhang, N. Weinberger, in:, 36th Conference on Neural Information Processing Systems, ML Research Press, 2022.
[Published Version]
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Y. Zhang, N. Weinberger, in:, 36th Conference on Neural Information Processing Systems, ML Research Press, 2022.
2022 | Published | Conference Paper | IST-REx-ID: 17088 |

The optimal BERT surgeon: Scalable and accurate second-order pruning for large language models
E. Kurtic, D. Campos, T. Nguyen, E. Frantar, M. Kurtz, B. Fineran, M. Goin, D.-A. Alistarh, in:, Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, Association for Computational Linguistics, 2022, pp. 4163–4181.
[Published Version]
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| arXiv
E. Kurtic, D. Campos, T. Nguyen, E. Frantar, M. Kurtz, B. Fineran, M. Goin, D.-A. Alistarh, in:, Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, Association for Computational Linguistics, 2022, pp. 4163–4181.
2022 | Published | Conference Paper | IST-REx-ID: 12017
New results on AVCs with omniscient and myopic adversaries
A.K. Yadav, M. Alimohammadi, Y. Zhang, A.J. Budkuley, S. Jaggi, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 2535–2540.
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A.K. Yadav, M. Alimohammadi, Y. Zhang, A.J. Budkuley, S. Jaggi, in:, 2022 IEEE International Symposium on Information Theory, Institute of Electrical and Electronics Engineers, 2022, pp. 2535–2540.
2022 | Published | Journal Article | IST-REx-ID: 12051 |

The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans
J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
[Published Version]
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J.L. Daiß, M. Pilsl, K. Straub, A. Bleckmann, M. Höcherl, F.B. Heiss, G. Abascal-Palacios, E.P. Ramsay, K. Tluckova, J.-C. Mars, T. Fürtges, A. Bruckmann, T. Rudack, C. Bernecky, V. Lamour, K. Panov, A. Vannini, T. Moss, C. Engel, Life Science Alliance 5 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12054 |

Structural insights into auxin recognition and efflux by Arabidopsis PIN1
Z. Yang, J. Xia, J. Hong, C. Zhang, H. Wei, W. Ying, C. Sun, L. Sun, Y. Mao, Y. Gao, S. Tan, J. Friml, D. Li, X. Liu, L. Sun, Nature 609 (2022) 611–615.
[Published Version]
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Z. Yang, J. Xia, J. Hong, C. Zhang, H. Wei, W. Ying, C. Sun, L. Sun, Y. Mao, Y. Gao, S. Tan, J. Friml, D. Li, X. Liu, L. Sun, Nature 609 (2022) 611–615.
2022 | Published | Journal Article | IST-REx-ID: 12085 |

Weak catch bonds make strong networks
Y. Mulla, M. Avellaneda Sarrió, A. Roland, L. Baldauf, W. Jung, T. Kim, S.J. Tans, G.H. Koenderink, Nature Materials 21 (2022) 1019–1023.
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Y. Mulla, M. Avellaneda Sarrió, A. Roland, L. Baldauf, W. Jung, T. Kim, S.J. Tans, G.H. Koenderink, Nature Materials 21 (2022) 1019–1023.
2022 | Published | Conference Paper | IST-REx-ID: 12088
Realizing a quantum-enabled interconnect between microwave and telecom light
R. Sahu, W.J. Hease, A.R. Rueda Sanchez, G.M. Arnold, L. Qiu, J.M. Fink, in:, Conference on Lasers and Electro-Optics, Optica Publishing Group, 2022.
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R. Sahu, W.J. Hease, A.R. Rueda Sanchez, G.M. Arnold, L. Qiu, J.M. Fink, in:, Conference on Lasers and Electro-Optics, Optica Publishing Group, 2022.
2022 | Published | Journal Article | IST-REx-ID: 12107 |

Precipitating fraction, not intensity, explains extreme coarse-grained precipitation Clausius-Clapeyron scaling with sea surface temperature over tropical oceans
R. Roca, V. De Meyer, C.J. Muller, Geophysical Research Letters 49 (2022).
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R. Roca, V. De Meyer, C.J. Muller, Geophysical Research Letters 49 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12111 |

Entanglement-based observables for quantum impurities
L. Stocker, S. Sack, M.S. Ferguson, O. Zilberberg, Physical Review Research 4 (2022).
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L. Stocker, S. Sack, M.S. Ferguson, O. Zilberberg, Physical Review Research 4 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12121 |

Plant autophagosomes mature into amphisomes prior to their delivery to the central vacuole
J. Zhao, M.T. Bui, J. Ma, F. Künzl, L. Picchianti, J.C. De La Concepcion, Y. Chen, S. Petsangouraki, A. Mohseni, M. García-Leon, M.S. Gomez, C. Giannini, D. Gwennogan, R. Kobylinska, M. Clavel, S. Schellmann, Y. Jaillais, J. Friml, B.-H. Kang, Y. Dagdas, Journal of Cell Biology 221 (2022).
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J. Zhao, M.T. Bui, J. Ma, F. Künzl, L. Picchianti, J.C. De La Concepcion, Y. Chen, S. Petsangouraki, A. Mohseni, M. García-Leon, M.S. Gomez, C. Giannini, D. Gwennogan, R. Kobylinska, M. Clavel, S. Schellmann, Y. Jaillais, J. Friml, B.-H. Kang, Y. Dagdas, Journal of Cell Biology 221 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12128 |

BenchML: An extensible pipelining framework for benchmarking representations of materials and molecules at scale
C. Poelking, F.A. Faber, B. Cheng, Machine Learning: Science and Technology 3 (2022).
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C. Poelking, F.A. Faber, B. Cheng, Machine Learning: Science and Technology 3 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12131 |

Anti-Ad26 humoral immunity does not compromise SARS-COV-2 neutralizing antibody responses following Gam-COVID-Vac booster vaccination
M.G. Byazrova, E.A. Astakhova, A. Minnegalieva, M.M. Sukhova, A.A. Mikhailov, A.G. Prilipov, A.A. Gorchakov, A.V. Filatov, Npj Vaccines 7 (2022).
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M.G. Byazrova, E.A. Astakhova, A. Minnegalieva, M.M. Sukhova, A.A. Mikhailov, A.G. Prilipov, A.A. Gorchakov, A.V. Filatov, Npj Vaccines 7 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12133
Principles of disease defence in organisms, superorganisms and societies
S. Cremer, M.K. Sixt, Nature Reviews Immunology 22 (2022) 713–714.
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S. Cremer, M.K. Sixt, Nature Reviews Immunology 22 (2022) 713–714.
2022 | Published | Journal Article | IST-REx-ID: 12134 |

Explosive transitions in epidemic dynamics
G. Börner, M. Schröder, D. Scarselli, N.B. Budanur, B. Hof, M. Timme, Journal of Physics: Complexity 3 (2022).
[Published Version]
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G. Börner, M. Schröder, D. Scarselli, N.B. Budanur, B. Hof, M. Timme, Journal of Physics: Complexity 3 (2022).
2022 | Published | Journal Article | IST-REx-ID: 12137 |

Self-sustainment of coherent structures in counter-rotating Taylor–Couette flow
B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, A. Meseguer, Journal of Fluid Mechanics 951 (2022).
[Preprint]
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B. Wang, R. Ayats López, K. Deguchi, F. Mellibovsky, A. Meseguer, Journal of Fluid Mechanics 951 (2022).