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176 Publications


2023 | Journal Article | IST-REx-ID: 13127 | OA
Dynamic pathogen detection and social feedback shape collective hygiene in ants
B.E. Casillas Perez, K. Bodova, A.V. Grasse, G. Tkačik, S. Cremer, Nature Communications 14 (2023).
View | Files available | DOI | WoS | PubMed | Europe PMC
 

2023 | Journal Article | IST-REx-ID: 12762 | OA
Statistical modeling of adaptive neural networks explains co-existence of avalanches and oscillations in resting human brain
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, Nature Computational Science 3 (2023) 254–263.
View | Files available | DOI | arXiv
 

2022 | Preprint | IST-REx-ID: 10821 | OA
Alpha rhythm induces attenuation-amplification dynamics in neural activity cascades
F. Lombardi, H.J. Herrmann, L. Parrino, D. Plenz, S. Scarpetta, A.E. Vaudano, L. de Arcangelis, O. Shriki, BioRxiv (2022).
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2022 | Journal Article | IST-REx-ID: 11638 | OA
Inferring couplings in networks across order-disorder phase transitions
V. Ngampruetikorn, V. Sachdeva, J. Torrence, J. Humplik, D.J. Schwab, S.E. Palmer, Physical Review Research 4 (2022).
View | Files available | DOI | arXiv
 

2022 | Journal Article | IST-REx-ID: 12156 | OA
Eukaryotic gene regulation at equilibrium, or non?
B. Zoller, T. Gregor, G. Tkačik, Current Opinion in Systems Biology 31 (2022).
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2022 | Preprint | IST-REx-ID: 12487 | OA
Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture
S. Scarpetta, N. Morrisi, C. Mutti, N. Azzi, I. Trippi, R. Ciliento, I. Apicella, G. Messuti, M. Angiolelli, F. Lombardi, L. Parrino, A.E. Vaudano, BioRxiv (n.d.).
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2022 | Journal Article | IST-REx-ID: 10530 | OA
Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration
T. Zisis, D. Brückner, T. Brandstätter, W.X. Siow, J. d’Alessandro, A.M. Vollmar, C.P. Broedersz, S. Zahler, Biophysical Journal 121 (2022) P44-60.
View | Files available | DOI | WoS
 

2022 | Journal Article | IST-REx-ID: 10736 | OA
Predicting bacterial promoter function and evolution from random sequences
M. Lagator, S. Sarikas, M. Steinrueck, D. Toledo-Aparicio, J.P. Bollback, C.C. Guet, G. Tkačik, ELife 11 (2022).
View | Files available | DOI | WoS | PubMed | Europe PMC
 

2022 | Journal Article | IST-REx-ID: 12081 | OA
Accumulation and maintenance of information in evolution
M. Hledik, N.H. Barton, G. Tkačik, Proceedings of the National Academy of Sciences 119 (2022).
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2022 | Journal Article | IST-REx-ID: 12332 | OA
Efficient coding theory of dynamic attentional modulation
W.F. Mlynarski, G. Tkačik, PLoS Biology 20 (2022) e3001889.
View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 10535 | OA
Dynamic maximum entropy provides accurate approximation of structured population dynamics
K. Bodova, E. Szep, N.H. Barton, PLoS Computational Biology 17 (2021).
View | Files available | DOI | PubMed | Europe PMC | arXiv
 

2021 | Preprint | IST-REx-ID: 10912 | OA
Quantifying the coexistence of neuronal oscillations and avalanches
F. Lombardi, S. Pepic, O. Shriki, G. Tkačik, D. De Martino, (n.d.).
View | DOI | Download Preprint (ext.) | arXiv
 

2021 | Preprint | IST-REx-ID: 10579 | OA
Token-driven totally asymmetric simple exclusion process
B. Kavcic, G. Tkačik, ArXiv (n.d.).
View | DOI | Download Preprint (ext.) | arXiv
 

2021 | Journal Article | IST-REx-ID: 7463 | OA
Long-range temporal correlations in the broadband resting state activity of the human brain revealed by neuronal avalanches
F. Lombardi, O. Shriki, H.J. Herrmann, L. de Arcangelis, Neurocomputing 461 (2021) 657–666.
View | DOI | Download Preprint (ext.) | WoS
 

2021 | Journal Article | IST-REx-ID: 7553 | OA
Statistical analysis and optimality of neural systems
W.F. Mlynarski, M. Hledik, T.R. Sokolowski, G. Tkačik, Neuron 109 (2021) 1227–1241.e5.
View | Files available | DOI | Download Preprint (ext.) | WoS
 

2021 | Journal Article | IST-REx-ID: 8997 | OA
Minimal biophysical model of combined antibiotic action
B. Kavcic, G. Tkačik, M.T. Bollenbach, PLOS Computational Biology 17 (2021).
View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 9226 | OA
The many bits of positional information
G. Tkačik, T. Gregor, Development 148 (2021).
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2021 | Journal Article | IST-REx-ID: 9283 | OA
Local genetic context shapes the function of a gene regulatory network
A.A. Nagy-Staron, K. Tomasek, C. Caruso Carter, E. Sonnleitner, B. Kavcic, T. Paixão, C.C. Guet, ELife 10 (2021).
View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 9362 | OA
Inferring the function performed by a recurrent neural network
M.J. Chalk, G. Tkačik, O. Marre, PLoS ONE 16 (2021).
View | Files available | DOI | WoS
 

2021 | Journal Article | IST-REx-ID: 9439 | OA
Efficient and adaptive sensory codes
W.F. Mlynarski, A.M. Hermundstad, Nature Neuroscience 24 (2021) 998–1009.
View | DOI | Download Preprint (ext.) | WoS
 

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