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7296 Publications
2025 | Published | Journal Article | IST-REx-ID: 20100 | 
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Improving prediction accuracy in chimeric proteins with windowed multiple sequence alignment
S. Vedula, A.M. Bronstein, A. Marx, Computational and Structural Biotechnology Journal 27 (2025) 3292–3298.
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S. Vedula, A.M. Bronstein, A. Marx, Computational and Structural Biotechnology Journal 27 (2025) 3292–3298.
2025 | Research Data Reference | IST-REx-ID: 20107 |
Data - Sustainable Development Key to Limiting Climate Change-Driven Wildfire Damages
Y.-L. Hwong, E. Byers, M. Werning, Y. Quilcaille, (2025).
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Y.-L. Hwong, E. Byers, M. Werning, Y. Quilcaille, (2025).
2025 | Research Data Reference | IST-REx-ID: 20103 |
Replication Data for: "Improving Prediction Accuracy in Chimeric Proteins with Windowed Multiple Sequence Alignment"
S. Vedula, A.M. Bronstein, A. Marx, (2025).
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S. Vedula, A.M. Bronstein, A. Marx, (2025).
2025 | Published | Conference Paper | IST-REx-ID: 20038 |
The journey matters: Average parameter count over pre-training unifies sparse and dense scaling laws
T. Jin, A.I. Humayun, U. Evci, S. Subramanian, A. Yazdanbakhsh, D.-A. Alistarh, G.K. Dziugaite, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 85165–85181.
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T. Jin, A.I. Humayun, U. Evci, S. Subramanian, A. Yazdanbakhsh, D.-A. Alistarh, G.K. Dziugaite, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 85165–85181.
2025 | Published | Conference Paper | IST-REx-ID: 20033 |
High-dimensional analysis of knowledge distillation: Weak-to-Strong generalization and scaling laws
M. Emrullah Ildiz, H.A. Gozeten, E.O. Taga, M. Mondelli, S. Oymak, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 2967–3006.
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M. Emrullah Ildiz, H.A. Gozeten, E.O. Taga, M. Mondelli, S. Oymak, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 2967–3006.
2025 | Published | Conference Paper | IST-REx-ID: 20037 |
Wasserstein distances, neuronal entanglement, and sparsity
S. Sawmya, L. Kong, I. Markov, D.-A. Alistarh, N. Shavit, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 26244–26274.
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S. Sawmya, L. Kong, I. Markov, D.-A. Alistarh, N. Shavit, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 26244–26274.
2025 | Published | Conference Paper | IST-REx-ID: 20036 |
Near, far: Patch-ordering enhances vision foundation models' scene understanding
V. Pariza, M. Salehi, G. Burghouts, F. Locatello, Y.M. Asano, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 72303–72330.
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V. Pariza, M. Salehi, G. Burghouts, F. Locatello, Y.M. Asano, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 72303–72330.
2025 | Published | Conference Paper | IST-REx-ID: 20032 |
Scalable mechanistic neural networks
J. Chen, D. Yao, A.A. Pervez, D.-A. Alistarh, F. Locatello, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 63716–63737.
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J. Chen, D. Yao, A.A. Pervez, D.-A. Alistarh, F. Locatello, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 63716–63737.
2025 | Research Data | IST-REx-ID: 19696 |
Dataset for "Bumps on the Road: The Way to Clean Relaxation Dispersion in the Solid State"
B. Tatman, (2025).
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B. Tatman, (2025).
2025 | Published | Conference Paper | IST-REx-ID: 20035 |
Wide neural networks trained with weight decay provably exhibit neural collapse
A. Jacot, P. Súkeník, Z. Wang, M. Mondelli, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 1905–1931.
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A. Jacot, P. Súkeník, Z. Wang, M. Mondelli, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 1905–1931.
2025 | Published | Conference Paper | IST-REx-ID: 20034 |
LDAdam: Adaptive optimization from low-dimensional gradient statistics
T. Robert, M. Safaryan, I.-V. Modoranu, D.-A. Alistarh, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 101877–101913.
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T. Robert, M. Safaryan, I.-V. Modoranu, D.-A. Alistarh, in:, 13th International Conference on Learning Representations, ICLR, 2025, pp. 101877–101913.
2025 | Published | Journal Article | IST-REx-ID: 18987 |
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Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment
Kaiyrzhanov R, Thompson K, Efthymiou S, Mukushev A, Zharylkassyn A, Prasad C, Karimiani EG, Alvi JR, Niyazov D, Alahmad A, Babaei M, Tajsharghi H, Albash B, Alaqeel A, Charif M, Hashemi N, Heidari M, Kalantar SM, Lenaers G, Mehrjardi MYV, Srinivasan VM, Gowda VK, Mirabutalebi SH, Carere DA, Movahedinia M, Murphy D, Mcfarland R, Abdel-Hamid MS, Elhossini RM, Alavi S, Napier M, Belanger-Quintana A, Prasad AN, Jakobczyk J, Roubertie A, Rupar T, Sultan T, Toosi MB, Sazanov LA, Severino M, Houlden H, Taylor RW, Maroofian R. 2025. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. Brain Communications. 7(1), fcae453.
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Kaiyrzhanov R, Thompson K, Efthymiou S, Mukushev A, Zharylkassyn A, Prasad C, Karimiani EG, Alvi JR, Niyazov D, Alahmad A, Babaei M, Tajsharghi H, Albash B, Alaqeel A, Charif M, Hashemi N, Heidari M, Kalantar SM, Lenaers G, Mehrjardi MYV, Srinivasan VM, Gowda VK, Mirabutalebi SH, Carere DA, Movahedinia M, Murphy D, Mcfarland R, Abdel-Hamid MS, Elhossini RM, Alavi S, Napier M, Belanger-Quintana A, Prasad AN, Jakobczyk J, Roubertie A, Rupar T, Sultan T, Toosi MB, Sazanov LA, Severino M, Houlden H, Taylor RW, Maroofian R. 2025. Biallelic NDUFA13 variants lead to a neurodevelopmental phenotype with gradual neurological impairment. Brain Communications. 7(1), fcae453.
2025 | In Press | Journal Article | IST-REx-ID: 20143 |
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Kiwa is a membrane-embedded defense supercomplex activated at phage attachment sites
Z. Zhang, T.C. Todeschini, Y. Wu, R. Kogay, A. Naji, J. Cardenas Rodriguez, R. Mondi, D. Kaganovich, D.W. Taylor, J.P.K. Bravo, M. Teplova, T. Amen, E. Koonin, D.J. Patel, F.L. Nobrega, Cell (n.d.).
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Z. Zhang, T.C. Todeschini, Y. Wu, R. Kogay, A. Naji, J. Cardenas Rodriguez, R. Mondi, D. Kaganovich, D.W. Taylor, J.P.K. Bravo, M. Teplova, T. Amen, E. Koonin, D.J. Patel, F.L. Nobrega, Cell (n.d.).
2025 | Published | Working Paper | IST-REx-ID: 20146 |
Catalogue of criteria for assessing the funding eligibility of Open Science infrastructures
P. Gredler, C. Kaier, P. Danowski, M. Zoyer, K. Rieck, A. Ferus, E. Rosenberger, A. Löffler, L. Hofer, L. Still, Catalogue of Criteria for Assessing the Funding Eligibility of Open Science Infrastructures, Zenodo, 2025.
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P. Gredler, C. Kaier, P. Danowski, M. Zoyer, K. Rieck, A. Ferus, E. Rosenberger, A. Löffler, L. Hofer, L. Still, Catalogue of Criteria for Assessing the Funding Eligibility of Open Science Infrastructures, Zenodo, 2025.
2025 | Published | Journal Article | IST-REx-ID: 20188 |
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Front-biased activation of the Ras-Rab5-Rac1 loop coordinates collective cell migration
Y. Jikko, E. Deguchi, K. Matsuda, N. Hino, S. Tsukiji, M. Matsuda, K. Terai, Journal of Cell Science 138 (2025).
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Y. Jikko, E. Deguchi, K. Matsuda, N. Hino, S. Tsukiji, M. Matsuda, K. Terai, Journal of Cell Science 138 (2025).
2025 | Published | Journal Article | IST-REx-ID: 20183 |
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Unequal segregation of mitochondria during asymmetric cell division contributes to cell fate divergence in sister cells in vivo
I. Segos, J. Van Eeckhoven, S. Berger, N. Mishra, E.J. Lambie, B. Conradt, Nature Communications 16 (2025).
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I. Segos, J. Van Eeckhoven, S. Berger, N. Mishra, E.J. Lambie, B. Conradt, Nature Communications 16 (2025).
2025 | Epub ahead of print | Journal Article | IST-REx-ID: 20182 |
Insect sex chromosome evolution: Conservation, turnover, and mechanisms of dosage compensation
M.A. Toups, B. Vicoso, Current Opinion in Insect Science 72 (2025).
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M.A. Toups, B. Vicoso, Current Opinion in Insect Science 72 (2025).
2025 | Research Data | IST-REx-ID: 20242 |
Data of: "Quantifying the carbon footprint of conference travel: the case of NMR meetings"
P. Schanda, (2025).
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P. Schanda, (2025).
2025 | Published | Conference Paper | IST-REx-ID: 20189 |
Introducing certificates to the hardware model checking competition
N. Froleyks, E. Yu, M. Preiner, A. Biere, K. Heljanko, in:, 37th International Conference on Computer Aided Verification, Springer Nature, 2025, pp. 281–295.
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N. Froleyks, E. Yu, M. Preiner, A. Biere, K. Heljanko, in:, 37th International Conference on Computer Aided Verification, Springer Nature, 2025, pp. 281–295.
2025 | Published | Conference Paper | IST-REx-ID: 20225 |
Supermartingale certificates for quantitative omega-regular verification and control
T.A. Henzinger, K. Mallik, P. Sadeghi, D. Zikelic, in:, 37th International Conference on Computer Aided Verification, Springer Nature, 2025, pp. 29–55.
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T.A. Henzinger, K. Mallik, P. Sadeghi, D. Zikelic, in:, 37th International Conference on Computer Aided Verification, Springer Nature, 2025, pp. 29–55.