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10718 Publications
2004 | Published | Conference Paper | IST-REx-ID: 3988
Local search heuristic for rigid protein docking
V. Choi, P. Agarwal, H. Edelsbrunner, J. Rudolph, in:, Springer, 2004, pp. 218–229.
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| DOI
V. Choi, P. Agarwal, H. Edelsbrunner, J. Rudolph, in:, Springer, 2004, pp. 218–229.
2004 | Published | Conference Paper | IST-REx-ID: 3989
Local and global comparison of continuous functions
H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci, in:, IEEE, 2004, pp. 275–280.
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| DOI
H. Edelsbrunner, J. Harer, V. Natarajan, V. Pascucci, in:, IEEE, 2004, pp. 275–280.
2004 | Published | Journal Article | IST-REx-ID: 3990
Computing the writhing number of a polygonal knot
P. Agarwal, H. Edelsbrunner, Y. Wang, Discrete & Computational Geometry 32 (2004) 37–53.
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| DOI
P. Agarwal, H. Edelsbrunner, Y. Wang, Discrete & Computational Geometry 32 (2004) 37–53.
2004 | Published | Journal Article | IST-REx-ID: 4172
Gastrulation dynamics: cells move into focus
J. Montero, C.-P.J. Heisenberg, Trends in Cell Biology 14 (2004) 620–627.
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J. Montero, C.-P.J. Heisenberg, Trends in Cell Biology 14 (2004) 620–627.
2004 | Published | Conference Paper | IST-REx-ID: 18332
Blind source separation using the block-coordinate relative Newton method
A.M. Bronstein, M.M. Bronstein, M. Zibulevsky, in:, 5th International Conference on Independent Component Analysis and Blind Signal Separation, Springer Nature, 2004, pp. 406–413.
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A.M. Bronstein, M.M. Bronstein, M. Zibulevsky, in:, 5th International Conference on Independent Component Analysis and Blind Signal Separation, Springer Nature, 2004, pp. 406–413.
2004 | Published | Conference Paper | IST-REx-ID: 18334
Blind deconvolution using the relative Newton method
A.M. Bronstein, M.M. Bronstein, M. Zibulevsky, in:, 5th International Conference on Independent Component Analysis and Blind Signal Separation, Springer Nature, Berlin, Heidelberg, 2004, pp. 554–561.
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| DOI
A.M. Bronstein, M.M. Bronstein, M. Zibulevsky, in:, 5th International Conference on Independent Component Analysis and Blind Signal Separation, Springer Nature, Berlin, Heidelberg, 2004, pp. 554–561.
2004 | Published | Conference Paper | IST-REx-ID: 18331
Face recognition from facial surface metric
A.M. Bronstein, M.M. Bronstein, A. Spira, R. Kimmel, in:, 8th European Conference on Computer Vision, Springer Nature, 2004, pp. 225–237.
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| DOI
A.M. Bronstein, M.M. Bronstein, A. Spira, R. Kimmel, in:, 8th European Conference on Computer Vision, Springer Nature, 2004, pp. 225–237.
2004 | Published | Book Chapter | IST-REx-ID: 18739 | 
The Formation and Evolution of the First Massive Black Holes
Z. Haiman, E. Quataert, in:, Supermassive Black Holes in the Distant Universe, Springer Nature, 2004, pp. 147–185.
[Preprint]
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| arXiv
Z. Haiman, E. Quataert, in:, Supermassive Black Holes in the Distant Universe, Springer Nature, 2004, pp. 147–185.
2004 | Published | Journal Article | IST-REx-ID: 18742 |
On the dark side of quasar evolution
K. Menou, Z. Haiman, The Astrophysical Journal 615 (2004) 130–134.
[Preprint]
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| Download Preprint (ext.)
| arXiv
K. Menou, Z. Haiman, The Astrophysical Journal 615 (2004) 130–134.
2004 | Published | Journal Article | IST-REx-ID: 9493 |
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
[Published Version]
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| PubMed | Europe PMC
D. Zilberman, X. Cao, L.K. Johansen, Z. Xie, J.C. Carrington, S.E. Jacobsen, Current Biology 14 (2004) 1214–1220.
2004 | Published | Journal Article | IST-REx-ID: 9511 |
Silencing of transposons in plant genomes: kick them when they're down
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
[Published Version]
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| Download Published Version (ext.)
| PubMed | Europe PMC
D. Zilberman, S. Henikoff, Genome Biology 5 (2004).
2004 | Published | Journal Article | IST-REx-ID: 9517 |
Genetic and functional diversification of small RNA pathways in plants
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
[Published Version]
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| Download Published Version (ext.)
| PubMed | Europe PMC
Z. Xie, L.K. Johansen, A.M. Gustafson, K.D. Kasschau, A.D. Lellis, D. Zilberman, S.E. Jacobsen, J.C. Carrington, PLoS Biology 2 (2004) 0642–0652.
2004 | Published | Journal Article | IST-REx-ID: 8517
A limit shape theorem for periodic stochastic dispersion
D. Dolgopyat, V. Kaloshin, L. Koralov, Communications on Pure and Applied Mathematics 57 (2004) 1127–1158.
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D. Dolgopyat, V. Kaloshin, L. Koralov, Communications on Pure and Applied Mathematics 57 (2004) 1127–1158.
2004 | Published | Journal Article | IST-REx-ID: 8518
Sample path properties of the stochastic flows
L. Koralov, V. Kaloshin, D. Dolgopyat, The Annals of Probability 32 (2004) 1–27.
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| DOI
L. Koralov, V. Kaloshin, D. Dolgopyat, The Annals of Probability 32 (2004) 1–27.
2004 | Published | Journal Article | IST-REx-ID: 864
Prediction of functional sites by analysis of sequence and structure conservation
A. Panchenko, F. Kondrashov, S. Bryant, Protein Science 13 (2004) 884–892.
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| DOI
A. Panchenko, F. Kondrashov, S. Bryant, Protein Science 13 (2004) 884–892.
2004 | Published | Journal Article | IST-REx-ID: 870
Bioinformatical assay of human gene morbidity
F. Kondrashov, A. Ogurtsov, A. Kondrashov, Nucleic Acids Research 32 (2004) 1731–1737.
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| DOI
F. Kondrashov, A. Ogurtsov, A. Kondrashov, Nucleic Acids Research 32 (2004) 1731–1737.
2004 | Published | Journal Article | IST-REx-ID: 875
A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications
F. Kondrashov, E. Koonin, Trends in Genetics 20 (2004) 287–291.
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| DOI
F. Kondrashov, E. Koonin, Trends in Genetics 20 (2004) 287–291.
2004 | Published | Journal Article | IST-REx-ID: 889
Mechanisms and convergence of compensatory evolution in mammalian mitochondrial tRNAs
A. Kern, F. Kondrashov, Nature Genetics 36 (2004) 1207–1212.
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| DOI
A. Kern, F. Kondrashov, Nature Genetics 36 (2004) 1207–1212.
2004 | Published | Journal Article | IST-REx-ID: 898
Positive selection at sites of multiple amino acid replacements since rat-mouse divergence
G. Bazykin, F. Kondrashov, A. Ogurtsov, S. Sunyaev, A. Kondrashov, Nature 429 (2004) 558–562.
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| DOI
G. Bazykin, F. Kondrashov, A. Ogurtsov, S. Sunyaev, A. Kondrashov, Nature 429 (2004) 558–562.
2004 | Published | Journal Article | IST-REx-ID: 902
The functional genomic distribution of protein divergence in two animal phyla: Coevolution, genomic conflict, and constraint
C. Castillo Davis, F. Kondrashov, D. Hartl, R. Kulathinal, Genome Research 14 (2004) 802–811.
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| DOI
C. Castillo Davis, F. Kondrashov, D. Hartl, R. Kulathinal, Genome Research 14 (2004) 802–811.