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Anuj Patel

Alexis Benichou

Teemu Kuosmanen

Reka Borbely

Krishnan Iyer

Gasper Tkacik

Alex Chen Yi Zhang

Tereza Zuskinova

Sofia Backlund

Tetiana Rabiichuk

Elia Mascolo

Bahti Zakirov

Puzhen Xia

Ekaterina Maksimova

Bjoern Kscheschinski

Céline Camila Coraly Bräutigam

Pablo Mateu Hoyos

Natalia Ruzickova

Julian Renaud

Gabor Lengyel

Athina Diakogianni

Georg Martius

Thomas Sokolowski

Heloisa Chiossi

Remy Chait

Fabrizio Lombardi

Daniele De Martino

Gabriel Mitchell

Aditya Gilra

Simon Rella

Sarah Cepeda Humerez

Cristina Savin

Katarina Bodova

Sreyam Sengupta

Rok Grah

Matthew Chalk

Bor Kavcic

Roshan Prizak

David Brückner

Anna Andersson

Mantas Gabrielaitis

Georg Rieckh

Vicent Botella Soler

Anna Levina (Martius)

Jakob Ruess

Moritz Lang

Jan Humplik

Michal Hledik

Tamar Friedlander



202 Publications

2018 | Research Data | IST-REx-ID: 5587 | OA
Supporting materials "STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH"
D. De Martino, G. Tkačik, (2018).
[Published Version] View | Files available | DOI
 
2018 | Published | Journal Article | IST-REx-ID: 607 | OA
Well posedness and maximum entropy approximation for the dynamics of quantitative traits
K. Bodova, J. Haskovec, P. Markowich, Physica D: Nonlinear Phenomena 376–377 (2018) 108–120.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2018 | Research Data Reference | IST-REx-ID: 9831
Implementation of the inference method in Matlab
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, (2018).
[Published Version] View | Files available | DOI
 
2018 | Published | Journal Article | IST-REx-ID: 406 | OA
Probabilistic models of individual and collective animal behavior
K. Bod’Ová, G. Mitchell, R. Harpaz, E. Schneidman, G. Tkačik, PLoS One 13 (2018).
[Submitted Version] View | Files available | DOI | WoS
 
2018 | Published | Journal Article | IST-REx-ID: 457
Phage-host population dynamics promotes prophage acquisition in bacteria with innate immunity
M. Pleska, M. Lang, D. Refardt, B. Levin, C.C. Guet, Nature Ecology and Evolution 2 (2018) 359–366.
View | Files available | DOI | WoS
 
2018 | Published | Journal Article | IST-REx-ID: 67 | OA
Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkačik, J.P. Bollback, C.C. Guet, Nature Ecology and Evolution 2 (2018) 1633–1643.
[Submitted Version] View | Files available | DOI | WoS
 
2018 | Research Data | IST-REx-ID: 5585 | OA
Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring
C. Igler, M. Lagator, G. Tkačik, J.P. Bollback, C.C. Guet, (2018).
[Published Version] View | Files available | DOI
 
2017 | Published | Journal Article | IST-REx-ID: 2016 | OA
Exact goodness-of-fit testing for the Ising model
A. Martin Del Campo Sanchez, S.A. Cepeda Humerez, C. Uhler, Scandinavian Journal of Statistics 44 (2017) 285–306.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 
2017 | Published | Journal Article | IST-REx-ID: 1104 | OA
Multiplexed computations in retinal ganglion cells of a single type
S. Deny, U. Ferrari, E. Mace, P. Yger, R. Caplette, S. Picaud, G. Tkačik, O. Marre, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 1007 | OA
Zeros of nonlinear systems with input invariances
M. Lang, E. Sontag, Automatica 81C (2017) 46–55.
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 823 | OA
Phase transitions in integer linear problems
S. Colabrese, D. De Martino, L. Leuzzi, E. Marinari, Journal of Statistical Mechanics: Theory and Experiment 2017 (2017).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2017 | Published | Journal Article | IST-REx-ID: 943 | OA
Decoding of position in the developing neural tube from antiparallel morphogen gradients
M.P. Zagórski, Y. Tabata, N. Brandenberg, M. Lutolf, G. Tkačik, T. Bollenbach, J. Briscoe, A. Kicheva, Science 356 (2017) 1379–1383.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | PubMed | Europe PMC
 
2017 | Published | Journal Article | IST-REx-ID: 947 | OA
Quantifying the entropic cost of cellular growth control
D. De Martino, F. Capuani, A. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 96 (2017).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2017 | Published | Journal Article | IST-REx-ID: 955 | OA
Evolution of new regulatory functions on biophysically realistic fitness landscapes
T. Friedlander, R. Prizak, N.H. Barton, G. Tkačik, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI | WoS
 
2017 | Published | Journal Article | IST-REx-ID: 959 | OA
Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics
D. De Martino, Physical Review E Statistical Nonlinear and Soft Matter Physics 95 (2017) 062419.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2017 | Research Data Reference | IST-REx-ID: 9709 | OA
Data from: Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, (2017).
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 
2017 | Published | Journal Article | IST-REx-ID: 548 | OA
Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes
D. De Martino, Physical Review E 96 (2017).
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 
2017 | Research Data | IST-REx-ID: 5560 | OA
Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity
T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkačik, C.C. Guet, (2017).
[Published Version] View | Files available | DOI
 
2017 | Research Data | IST-REx-ID: 5562 | OA
Multi-electrode array recording from salamander retinal ganglion cells
O. Marre, G. Tkačik, D. Amodei, E. Schneidman, W. Bialek, M. Berry, (2017).
[Published Version] View | Files available | DOI
 
2017 | Published | Journal Article | IST-REx-ID: 613 | OA
Shaping bacterial population behavior through computer interfaced control of individual cells
R.P. Chait, J. Ruess, T. Bergmiller, G. Tkačik, C.C. Guet, Nature Communications 8 (2017).
[Published Version] View | Files available | DOI | WoS
 

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