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6713 Publications
2025 |
Published |
Journal Article |
IST-REx-ID: 20869
Reduced fitness under drought stress in F1 hybrids of Antirrhinum majus varieties with divergent flower colors
A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of Botany 112 (2025).
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| Files available
| DOI
| PubMed | Europe PMC
A. Fuster‐Calvo, C.C. Jaworski, T. Ellis, C. Baskett, American Journal of Botany 112 (2025).
2025 |
Published |
Book Chapter |
IST-REx-ID: 20870
Essentials of transcriptomic methods: Navigating through RNA sequencing and beyond
V. Stopa, M. Sopić, G. Li, J. Sluimer, J. Basílio, S.W. van der Laan, D.P. Kreil, Y. Devaux, B. Hochreiter, in:, Y. Devaux, M. Sopic (Eds.), Transcriptomics in Atherosclerosis, Elsevier, 2025, pp. 131–172.
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| DOI
V. Stopa, M. Sopić, G. Li, J. Sluimer, J. Basílio, S.W. van der Laan, D.P. Kreil, Y. Devaux, B. Hochreiter, in:, Y. Devaux, M. Sopic (Eds.), Transcriptomics in Atherosclerosis, Elsevier, 2025, pp. 131–172.
2025 |
Published |
Journal Article |
IST-REx-ID: 20926 |
A universal augmentation framework for long-range electrostatics in machine learning interatomic potentials
D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal of Chemical Theory and Computation 21 (2025) 12709–12724.
[Preprint]
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| PubMed | Europe PMC
| arXiv
D. Kim, X. Wang, S. Vargas, P. Zhong, D.S. King, T.J. Inizan, B. Cheng, Journal of Chemical Theory and Computation 21 (2025) 12709–12724.
2025 |
Published |
Journal Article |
IST-REx-ID: 20928
Enhanced mass transfer in microgeometry using pulsating velocity inputs: Hydrodynamic analysis and numerical simulation
B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids 37 (2025).
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| DOI
B. Khatoon, V.K. Chaudhary, S. Kamil, S.U. Hasan, M.S. Alam, Physics of Fluids 37 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 20929 |
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Proximity labeling of DAF-16 FOXO highlights aging regulatory proteins
M. Artan, H. Schön, M. de Bono, Nature Communications 16 (2025).
[Published Version]
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| DOI
| PubMed | Europe PMC
M. Artan, H. Schön, M. de Bono, Nature Communications 16 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 20930 |
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A kinematic history of stellar encounters with Beta Pictoris
J.L. Gragera-Más, S. Torres Rodriguez, A.J. Mustill, E. Villaver, Astronomy & Astrophysics 704 (2025).
[Published Version]
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| DOI
| arXiv
J.L. Gragera-Más, S. Torres Rodriguez, A.J. Mustill, E. Villaver, Astronomy & Astrophysics 704 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 20932 |
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A Lyman continuum analysis of ∼100 galaxies at z spec∼ 3 in the Abell 2744 cluster field
Y. Liu, S. Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač, A. Calabrò, K. Glazebrook, A. Henry, M. Llerena, E. Merlin, B. Metha, T. Nanayakkara, L. Napolitano, N. Roy, B. Siana, E. Vanzella, B. Vulcani, X. Wang, Astronomy & Astrophysics 704 (2025).
[Published Version]
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| DOI
| arXiv
Y. Liu, S. Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač, A. Calabrò, K. Glazebrook, A. Henry, M. Llerena, E. Merlin, B. Metha, T. Nanayakkara, L. Napolitano, N. Roy, B. Siana, E. Vanzella, B. Vulcani, X. Wang, Astronomy & Astrophysics 704 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 20934 |
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Demystifying amortized causal discovery with transformers
F. Montagna, M.T. Cairney-Leeming, D. Sridhar, F. Locatello, Transactions on Machine Learning Research (2025).
[Published Version]
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| Files available
| arXiv
F. Montagna, M.T. Cairney-Leeming, D. Sridhar, F. Locatello, Transactions on Machine Learning Research (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 20976 |
Impedance-engineered Josephson parametric amplifier with single-step lithography
L. Patel, S. Hawaldar, A. Panikkar, A. Shankar, B. Suri, Applied Physics Letters 127 (2025).
[Preprint]
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| arXiv
L. Patel, S. Hawaldar, A. Panikkar, A. Shankar, B. Suri, Applied Physics Letters 127 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 20977 |
Spatiotemporal patterns differentiate hippocampal sharp-wave ripples from interictal epileptiform discharges in mice and humans
A. Maslarova, J.N. Shin, A.C. Navas Olivé, M. Vöröslakos, H. Hamer, A. Doerfler, S. Henin, G. Buzsáki, A. Liu, Nature Communications 16 (2025).
[Published Version]
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| DOI
| PubMed | Europe PMC
A. Maslarova, J.N. Shin, A.C. Navas Olivé, M. Vöröslakos, H. Hamer, A. Doerfler, S. Henin, G. Buzsáki, A. Liu, Nature Communications 16 (2025).
2025 |
Draft |
Preprint |
IST-REx-ID: 20982 |
Armadillo repeat only proteins are required for the function of plant CNGC channels
I. Kulich, D. Oulehlová, D. Vladimirtsev, M. Zou, E. Lileikyte, A. Bondar, K. Kulichová, M. Janda, O. Iakovenko, M. Neubergerová, T. Studtrucker, R. Pleskot, P. Dietrich, M. Fendrych, J. Friml, BioRxiv (n.d.).
[Preprint]
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I. Kulich, D. Oulehlová, D. Vladimirtsev, M. Zou, E. Lileikyte, A. Bondar, K. Kulichová, M. Janda, O. Iakovenko, M. Neubergerová, T. Studtrucker, R. Pleskot, P. Dietrich, M. Fendrych, J. Friml, BioRxiv (n.d.).
2025 |
Published |
Journal Article |
IST-REx-ID: 20990 |
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Machine learning interatomic potential can infer electrical response
P. Zhong, D. Kim, D.S. King, B. Cheng, Npj Computational Materials 11 (2025).
[Published Version]
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| DOI
P. Zhong, D. Kim, D.S. King, B. Cheng, Npj Computational Materials 11 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 21007 |
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A simpler and parallelizable O(√log n)-approximation algorithm for SPARSEST CUT
V. Kolmogorov, ACM Transactions on Algorithms 21 (2025) 1–22.
[Published Version]
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| DOI
| arXiv
V. Kolmogorov, ACM Transactions on Algorithms 21 (2025) 1–22.
2025 |
Published |
Conference Paper |
IST-REx-ID: 21020 |
Privacy-preserving runtime verification
T.A. Henzinger, M. Karimi, K.S. Thejaswini, in:, Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security, Association for Computing Machinery, 2025, pp. 2774–2787.
[Published Version]
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| DOI
| arXiv
T.A. Henzinger, M. Karimi, K.S. Thejaswini, in:, Proceedings of the 2025 ACM SIGSAC Conference on Computer and Communications Security, Association for Computing Machinery, 2025, pp. 2774–2787.
2025 |
Published |
Conference Paper |
IST-REx-ID: 21049 |
How to probe: Simple yet effective techniques for improving post-hoc explanations
S. Gairola, M. Böhle, F. Locatello, B. Schiele, in:, 13th International Conference on Learning Representations, ICLR, 2025.
[Published Version]
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| arXiv
S. Gairola, M. Böhle, F. Locatello, B. Schiele, in:, 13th International Conference on Learning Representations, ICLR, 2025.
2025 |
Published |
Journal Article |
IST-REx-ID: 21057 |
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Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit
Setton DJ, Greene JE, de Graaff A, Ma Y逸伦, Leja J, Matthee JJ, Bezanson R, Boogaard LA, Cleri NJ, Katz H, Labbe I, Maseda MV, McConachie I, Miller TB, Price SH, Suess KA, van Dokkum P, Wang 王 B冰洁, Weibel A, Whitaker KE, Williams CC. 2025. Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit. The Astrophysical Journal. 995(1), 118.
[Published Version]
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| DOI
| arXiv
Setton DJ, Greene JE, de Graaff A, Ma Y逸伦, Leja J, Matthee JJ, Bezanson R, Boogaard LA, Cleri NJ, Katz H, Labbe I, Maseda MV, McConachie I, Miller TB, Price SH, Suess KA, van Dokkum P, Wang 王 B冰洁, Weibel A, Whitaker KE, Williams CC. 2025. Little Red Dots at an inflection point: Ubiquitous v-shaped turnover consistently occurs at the Balmer limit. The Astrophysical Journal. 995(1), 118.
2025 |
Published |
Journal Article |
IST-REx-ID: 21058 |
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A confirmed deficit of hot and cold dust emission in the most luminous Little Red Dots
Setton DJ, Greene JE, Spilker JS, Williams CC, Labbé I, Ma Y逸伦, Wang B冰洁, Whitaker KE, Leja J, de Graaff A, Alberts S, Bezanson R, Boogaard LA, Brammer G, Cutler SE, Cleri NJ, Cooper OR, Dayal P, Fujimoto S, Furtak LJ, Goulding AD, Hirschmann M, Kokorev V, Maseda MV, McConachie I, Matthee JJ, Miller TB, Naidu RP, Oesch PA, Pan R, Price SH, Suess KA, Weaver JR, Xiao M, Zhang Y, Zitrin A. 2025. A confirmed deficit of hot and cold dust emission in the most luminous Little Red Dots. The Astrophysical Journal Letters. 991, L10.
[Published Version]
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| DOI
| arXiv
Setton DJ, Greene JE, Spilker JS, Williams CC, Labbé I, Ma Y逸伦, Wang B冰洁, Whitaker KE, Leja J, de Graaff A, Alberts S, Bezanson R, Boogaard LA, Brammer G, Cutler SE, Cleri NJ, Cooper OR, Dayal P, Fujimoto S, Furtak LJ, Goulding AD, Hirschmann M, Kokorev V, Maseda MV, McConachie I, Matthee JJ, Miller TB, Naidu RP, Oesch PA, Pan R, Price SH, Suess KA, Weaver JR, Xiao M, Zhang Y, Zitrin A. 2025. A confirmed deficit of hot and cold dust emission in the most luminous Little Red Dots. The Astrophysical Journal Letters. 991, L10.
2025 |
Published |
Journal Article |
IST-REx-ID: 21060 |
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Little impact of mergers and galaxy morphology on the production and escape of ionizing photons in the early Universe
Mascia S, Pentericci L, Llerena M, Calabrò A, Matthee JJ, Flury S, Pacucci F, Jaskot A, Amorín RO, Bhatawdekar R, Castellano M, Cleri N, Costantin L, Davis K, Di Cesare C, Dickinson M, Fontana A, Guo Y, Giavalisco M, Holwerda BW, Hu W, Huertas-Company M, Jung I, Kartaltepe J, Kashino D, Koekemoer AM, Lucas RA, Lotz J, Napolitano L, Jogee S, Wilkins S. 2025. Little impact of mergers and galaxy morphology on the production and escape of ionizing photons in the early Universe. Astronomy & Astrophysics. 701, A122.
[Published Version]
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| DOI
| arXiv
Mascia S, Pentericci L, Llerena M, Calabrò A, Matthee JJ, Flury S, Pacucci F, Jaskot A, Amorín RO, Bhatawdekar R, Castellano M, Cleri N, Costantin L, Davis K, Di Cesare C, Dickinson M, Fontana A, Guo Y, Giavalisco M, Holwerda BW, Hu W, Huertas-Company M, Jung I, Kartaltepe J, Kashino D, Koekemoer AM, Lucas RA, Lotz J, Napolitano L, Jogee S, Wilkins S. 2025. Little impact of mergers and galaxy morphology on the production and escape of ionizing photons in the early Universe. Astronomy & Astrophysics. 701, A122.
2025 |
Published |
Journal Article |
IST-REx-ID: 21061 |
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GLIMPSE: An ultrafaint ≃10^5 M⊙ Pop III galaxy candidate and first constraints on the Pop III UV luminosity function at z ≃ 6–7
Fujimoto S, Naidu RP, Chisholm J, Atek H, Endsley R, Kokorev V, Furtak LJ, Pan R, Liu B, Bromm V, Venditti A, Visbal E, Sarmento R, Weibel A, Oesch PA, Brammer G, Schaerer D, Adamo A, Berg DA, Bezanson R, Bouwens R, Chemerynska I, Claeyssens A, Dessauges-Zavadsky M, Frebel A, Korber D, Labbe I, Marques-Chaves R, Matthee JJ, McQuinn KBW, Muñoz JB, Natarajan P, Saldana-Lopez A, Suess KA, Volonteri M, Zitrin A. 2025. GLIMPSE: An ultrafaint ≃10^5 M⊙ Pop III galaxy candidate and first constraints on the Pop III UV luminosity function at z ≃ 6–7. The Astrophysical Journal. 989, 46.
[Published Version]
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Fujimoto S, Naidu RP, Chisholm J, Atek H, Endsley R, Kokorev V, Furtak LJ, Pan R, Liu B, Bromm V, Venditti A, Visbal E, Sarmento R, Weibel A, Oesch PA, Brammer G, Schaerer D, Adamo A, Berg DA, Bezanson R, Bouwens R, Chemerynska I, Claeyssens A, Dessauges-Zavadsky M, Frebel A, Korber D, Labbe I, Marques-Chaves R, Matthee JJ, McQuinn KBW, Muñoz JB, Natarajan P, Saldana-Lopez A, Suess KA, Volonteri M, Zitrin A. 2025. GLIMPSE: An ultrafaint ≃10^5 M⊙ Pop III galaxy candidate and first constraints on the Pop III UV luminosity function at z ≃ 6–7. The Astrophysical Journal. 989, 46.
2025 |
Published |
Journal Article |
IST-REx-ID: 21062 |
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Environmental evidence for overly massive Black Holes in low-mass galaxies and a Black Hole–Halo mass relation at z ∼ 5
J.J. Matthee, R.P. Naidu, G. Kotiwale, L.J. Furtak, I. Kramarenko, R. Mackenzie, J. Greene, A. Adamo, R.J. Bouwens, C. Di Cesare, A.-C. Eilers, A. de Graaff, K.E. Heintz, D. Kashino, M.V. Maseda, S. Tacchella, A. Torralba Torregrosa, The Astrophysical Journal 988 (2025).
[Published Version]
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| DOI
| arXiv
J.J. Matthee, R.P. Naidu, G. Kotiwale, L.J. Furtak, I. Kramarenko, R. Mackenzie, J. Greene, A. Adamo, R.J. Bouwens, C. Di Cesare, A.-C. Eilers, A. de Graaff, K.E. Heintz, D. Kashino, M.V. Maseda, S. Tacchella, A. Torralba Torregrosa, The Astrophysical Journal 988 (2025).