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5 Publications
2025 | Published | Journal Article | IST-REx-ID: 19796 |

Mapping the attractor landscape of Boolean networks with biobalm
V.G. Trinh, K.H. Park, S. Pastva, J.C. Rozum, Bioinformatics 41 (2025).
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V.G. Trinh, K.H. Park, S. Pastva, J.C. Rozum, Bioinformatics 41 (2025).
2023 | Published | Journal Article | IST-REx-ID: 12876 |

Boolean network sketches: A unifying framework for logical model inference
N. Beneš, L. Brim, O. Huvar, S. Pastva, D. Šafránek, Bioinformatics 39 (2023).
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N. Beneš, L. Brim, O. Huvar, S. Pastva, D. Šafránek, Bioinformatics 39 (2023).
2023 | Published | Journal Article | IST-REx-ID: 13263 |

Trap spaces of multi-valued networks: Definition, computation, and applications
V.G. Trinh, B. Benhamou, T.A. Henzinger, S. Pastva, Bioinformatics 39 (2023) i513–i522.
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V.G. Trinh, B. Benhamou, T.A. Henzinger, S. Pastva, Bioinformatics 39 (2023) i513–i522.
2020 | Published | Journal Article | IST-REx-ID: 14125 |

SCIM: Universal single-cell matching with unpaired feature sets
Stark SG et al. 2020. SCIM: Universal single-cell matching with unpaired feature sets. Bioinformatics. 36(Supplement_2), i919–i927.
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Stark SG et al. 2020. SCIM: Universal single-cell matching with unpaired feature sets. Bioinformatics. 36(Supplement_2), i919–i927.
2018 | Published | Journal Article | IST-REx-ID: 5995 |

Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation
D.R. Usmanova, N.S. Bogatyreva, J. Ariño Bernad, A.A. Eremina, A.A. Gorshkova, G.M. Kanevskiy, L.R. Lonishin, A.V. Meister, A.G. Yakupova, F. Kondrashov, D. Ivankov, Bioinformatics 34 (2018) 3653–3658.
[Published Version]
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D.R. Usmanova, N.S. Bogatyreva, J. Ariño Bernad, A.A. Eremina, A.A. Gorshkova, G.M. Kanevskiy, L.R. Lonishin, A.V. Meister, A.G. Yakupova, F. Kondrashov, D. Ivankov, Bioinformatics 34 (2018) 3653–3658.