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723 Publications
2007 | Journal Article | IST-REx-ID: 4531
Predictive modeling of signaling crosstalk during C. elegans vulval development
J. Fisher, N. Piterman, A. Hajnal, T.A. Henzinger, PLoS Computational Biology 3(5):e92 (2007).
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| DOI
J. Fisher, N. Piterman, A. Hajnal, T.A. Henzinger, PLoS Computational Biology 3(5):e92 (2007).
2007 | Thesis | IST-REx-ID: 4566
A framework for compositional design and analysis of systems
A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.
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A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.
2007 | Journal Article | IST-REx-ID: 4567
The software model checker BLAST: Applications to software engineering
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.
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| DOI
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.
2007 | Journal Article | IST-REx-ID: 4626
Concurrent reachability games
L. De Alfaro, T.A. Henzinger, O. Kupferman, Theoretical Computer Science 386 (2007) 188–217.
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| DOI
L. De Alfaro, T.A. Henzinger, O. Kupferman, Theoretical Computer Science 386 (2007) 188–217.
2007 | Journal Article | IST-REx-ID: 7781
Live fast, die young: Trade-offs between fitness components and sexually antagonistic selection on weaponry in soay sheep
M.R. Robinson, J.G. Pilkington, T.H. Clutton-Brock, J.M. Pemberton, L.E.B. Kruuk, Evolution 60 (2007) 2168–2181.
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| DOI
M.R. Robinson, J.G. Pilkington, T.H. Clutton-Brock, J.M. Pemberton, L.E.B. Kruuk, Evolution 60 (2007) 2168–2181.
2006 | Conference Paper | IST-REx-ID: 1034 | 
Experimental evidence for Efimov quantum states
H. Nägerl, T. Kraemer, M. Mark, P. Waldburger, J.G. Danzl, B. Engeser, A. Lange, K. Pilch, A. Jaakkola, C. Chin, R. Grimm, in:, AIP, 2006, pp. 269–277.
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H. Nägerl, T. Kraemer, M. Mark, P. Waldburger, J.G. Danzl, B. Engeser, A. Lange, K. Pilch, A. Jaakkola, C. Chin, R. Grimm, in:, AIP, 2006, pp. 269–277.
2006 | Journal Article | IST-REx-ID: 1715
Postsynaptic mad signaling at the Drosophila neuromuscular junction
V. Dudu, T. Bittig, E. Entchev, A. Kicheva, F. Julicher, M. González Gaitán, Current Biology 16 (2006) 625–635.
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V. Dudu, T. Bittig, E. Entchev, A. Kicheva, F. Julicher, M. González Gaitán, Current Biology 16 (2006) 625–635.
2006 | Journal Article | IST-REx-ID: 1796
Novel anti-viral therapy: Drugs that block HIV entry at different target sites
S. Siegert, P. Schnierle, B. Schnierle, Mini-Reviews in Medicinal Chemistry 6 (2006) 557–562.
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| DOI
S. Siegert, P. Schnierle, B. Schnierle, Mini-Reviews in Medicinal Chemistry 6 (2006) 557–562.
2006 | Journal Article | IST-REx-ID: 2089
Analysis of human faces using a measurement-based skin reflectance model
T. Weyrich, W. Matusik, H. Pfister, B. Bickel, C. Donner, C. Tu, J. Mcandless, J. Lee, A. Ngan, H. Jensen, M. Groß, ACM Transactions on Graphics 25 (2006) 1013–1024.
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| DOI
T. Weyrich, W. Matusik, H. Pfister, B. Bickel, C. Donner, C. Tu, J. Mcandless, J. Lee, A. Ngan, H. Jensen, M. Groß, ACM Transactions on Graphics 25 (2006) 1013–1024.
2006 | Conference Paper | IST-REx-ID: 2088
Analysis of human faces using a measurement-based skin reflectance model
T. Weyrich, W. Matusik, H. Pfister, B. Bickel, C. Donner, C. Tu, J. Mcandless, J. Lee, A. Ngan, H. Jensen, M. Groß, in:, ACM, 2006, pp. 1013–1024.
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| DOI
T. Weyrich, W. Matusik, H. Pfister, B. Bickel, C. Donner, C. Tu, J. Mcandless, J. Lee, A. Ngan, H. Jensen, M. Groß, in:, ACM, 2006, pp. 1013–1024.
2006 | Journal Article | IST-REx-ID: 2144
Temperature dependent XAFS studies of local atomic structure of the perovskite-type zirconates
R. Vedrinskiǐ, E. Nazarenko, M. Lemeshko, V. Nassif, O. Proux, A. Novakovich, Y. Joly, Physical Review B - Condensed Matter and Materials Physics 73 (2006).
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| DOI
R. Vedrinskiǐ, E. Nazarenko, M. Lemeshko, V. Nassif, O. Proux, A. Novakovich, Y. Joly, Physical Review B - Condensed Matter and Materials Physics 73 (2006).
2006 | Journal Article | IST-REx-ID: 2663
A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses
T. Kodama, Y. Itsukaichi Nishida, Y. Fukazawa, M. Wakamori, M. Miyata, E. Molnár, Y. Mori, R. Shigemoto, K. Imoto, European Journal of Neuroscience 24 (2006) 2993–3007.
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| DOI
T. Kodama, Y. Itsukaichi Nishida, Y. Fukazawa, M. Wakamori, M. Miyata, E. Molnár, Y. Mori, R. Shigemoto, K. Imoto, European Journal of Neuroscience 24 (2006) 2993–3007.
2006 | Book Chapter | IST-REx-ID: 3002
In vitro culture of Arabidopsis embryos
M. Sauer, J. Friml, in:, A. Mujib, J. Šamaj (Eds.), Somatic Embryogenesis, Springer, 2006, pp. 343–354.
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M. Sauer, J. Friml, in:, A. Mujib, J. Šamaj (Eds.), Somatic Embryogenesis, Springer, 2006, pp. 343–354.
2006 | Journal Article | IST-REx-ID: 3934
Characterization of a conduit system containing laminin-5 in the human thymus: a potential transport system for small molecules
M. Drumea Mirancea, J. Wessels, C. Müller, M. Essl, J. Eble, E. Tolosa, M. Koch, D. Reinhardt, M.K. Sixt, L. Sorokin, Y. Stierhof, H. Schwarz, G. Klein, Journal of Cell Science 119 (2006) 1396–1405.
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M. Drumea Mirancea, J. Wessels, C. Müller, M. Essl, J. Eble, E. Tolosa, M. Koch, D. Reinhardt, M.K. Sixt, L. Sorokin, Y. Stierhof, H. Schwarz, G. Klein, Journal of Cell Science 119 (2006) 1396–1405.
2006 | Journal Article | IST-REx-ID: 8490
Hadamard frequency-encoded SOFAST-HMQC for ultrafast two-dimensional protein NMR
P. Schanda, B. Brutscher, Journal of Magnetic Resonance 178 (2006) 334–339.
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P. Schanda, B. Brutscher, Journal of Magnetic Resonance 178 (2006) 334–339.
2005 | Book Chapter | IST-REx-ID: 1444 |
Mirror symmetry and Langlands duality in the non-Abelian Hodge theory of a curve
T. Hausel, in:, Geometric Methods in Algebra and Number Theory, Springer, 2005, pp. 193–217.
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T. Hausel, in:, Geometric Methods in Algebra and Number Theory, Springer, 2005, pp. 193–217.
2005 | Journal Article | IST-REx-ID: 1740
Pyramids and domes in the InAs/GaAs (0 0 1) and Ge/Si (0 0 1) systems
G. Costantini, A. Rastelli, C. Manzano, P. Acosta Diaz, G. Katsaros, R. Songmuang, O. Schmidt, H. Von Känel, K. Kern, Journal of Crystal Growth 278 (2005) 38–45.
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| DOI
G. Costantini, A. Rastelli, C. Manzano, P. Acosta Diaz, G. Katsaros, R. Songmuang, O. Schmidt, H. Von Känel, K. Kern, Journal of Crystal Growth 278 (2005) 38–45.
2005 | Journal Article | IST-REx-ID: 1795
Assessment of HIV-1 entry inhibitors by MLV/HIV-1 pseudotyped vectors
S. Siegert, S. Thaler, R. Wagner, B. Schnierle, AIDS Research and Therapy 2 (2005).
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| DOI
S. Siegert, S. Thaler, R. Wagner, B. Schnierle, AIDS Research and Therapy 2 (2005).
2005 | Journal Article | IST-REx-ID: 2650
GABAB and CB1 cannabinoid receptor expression identifies two types of septal cholinergic neurons
G. Nyíri, E. Szabadits, C. Cserép, K. Mackie, R. Shigemoto, T. Freund, European Journal of Neuroscience 21 (2005) 3034–3042.
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G. Nyíri, E. Szabadits, C. Cserép, K. Mackie, R. Shigemoto, T. Freund, European Journal of Neuroscience 21 (2005) 3034–3042.
2005 | Journal Article | IST-REx-ID: 2649
Number and density of AMPA receptors in single synapses in immature cerebellum
J. Tanaka, M. Matsuzaki, E. Tarusawa, A. Momiyama, E. Molnár, H. Kasai, R. Shigemoto, Journal of Neuroscience 25 (2005) 799–807.
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J. Tanaka, M. Matsuzaki, E. Tarusawa, A. Momiyama, E. Molnár, H. Kasai, R. Shigemoto, Journal of Neuroscience 25 (2005) 799–807.
2005 | Journal Article | IST-REx-ID: 2654
Metabotropic glutamate receptor 8-expressing nerve terminals target subsets of GABAergic neurons in the hippocampus
F. Ferraguti, T. Klausberger, P. Cobden, A. Baude, J. Roberts, P. Szűcs, A. Kinoshita, R. Shigemoto, P. Somogyi, Y. Dalezios, Journal of Neuroscience 25 (2005) 10520–10536.
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F. Ferraguti, T. Klausberger, P. Cobden, A. Baude, J. Roberts, P. Szűcs, A. Kinoshita, R. Shigemoto, P. Somogyi, Y. Dalezios, Journal of Neuroscience 25 (2005) 10520–10536.
2005 | Journal Article | IST-REx-ID: 3443
Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations
T. Klausberger, L. Marton, J. O’Neill, J. Huck, Y. Dalezios, P. Fuentealba, W. Suen, E. Papp, T. Kaneko, M. Watanabe, J.L. Csicsvari, P. Somogyi, Journal of Neuroscience 25 (2005) 9782–9793.
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T. Klausberger, L. Marton, J. O’Neill, J. Huck, Y. Dalezios, P. Fuentealba, W. Suen, E. Papp, T. Kaneko, M. Watanabe, J.L. Csicsvari, P. Somogyi, Journal of Neuroscience 25 (2005) 9782–9793.
2005 | Book Review | IST-REx-ID: 3812
Asynchronous GABA release generates long-lasting inhibition at a hippocampal interneuron-principal neuron synapse (Review)
S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28.
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S. Hefft, P.M. Jonas, Nature Neuroscience 8 (2005) 1319–28.
2005 | Journal Article | IST-REx-ID: 3611
Mating patterns in a Bombina hybrid zone: Inferences from adult and full sib genotypes
B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.
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B. Nürnberger, N.H. Barton, L. Kruuk, T. Vines, Heredity 94 (2005) 247–257.
2005 | Journal Article | IST-REx-ID: 3613
Genetic variation for total fitness in Drosophila melanogaster: Complex yet replicable patterns
M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.
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M. Gardner, K. Fowler, N.H. Barton, L. Patridge, Genetics 169 (2005) 1553–1571.
2005 | Journal Article | IST-REx-ID: 4144
Wnt11 functions in gastrulation by controlling cell cohesion through Rab5c and E-cadherin
F. Ulrich, M. Krieg, E. Schötz, V. Link, I. Castanon, V. Schnabel, A. Taubenberger, D. Müller, P. Puech, C.-P.J. Heisenberg, Developmental Cell 9 (2005) 555–564.
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F. Ulrich, M. Krieg, E. Schötz, V. Link, I. Castanon, V. Schnabel, A. Taubenberger, D. Müller, P. Puech, C.-P.J. Heisenberg, Developmental Cell 9 (2005) 555–564.
2005 | Journal Article | IST-REx-ID: 4155
Measuring cell adhesion forces of primary gastrulating cells from zebrafish using atomic force microscopy
P. Puech, A. Taubenberger, F. Ulrich, M. Krieg, D. Mueller, C.-P.J. Heisenberg, Journal of Cell Science 118 (2005) 4199–4206.
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P. Puech, A. Taubenberger, F. Ulrich, M. Krieg, D. Mueller, C.-P.J. Heisenberg, Journal of Cell Science 118 (2005) 4199–4206.
2005 | Conference Paper | IST-REx-ID: 4579
Checking memory safety with BLAST
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2005, pp. 2–18.
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D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2005, pp. 2–18.
2005 | Journal Article | IST-REx-ID: 9491 |
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
[Published Version]
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R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
2005 | Journal Article | IST-REx-ID: 9514 |
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
[Published Version]
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| Download Published Version (ext.)
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R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
2004 | Journal Article | IST-REx-ID: 1456 |
Hodge cohomology of gravitational instantons
T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004) 485–548.
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T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004) 485–548.
2004 | Journal Article | IST-REx-ID: 1464 |
Generators for the cohomology ring of the moduli space of rank 2 higgs bundles
T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88 (2004) 632–658.
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T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88 (2004) 632–658.
2004 | Journal Article | IST-REx-ID: 2639
GABAergic basket cells expressing cholecystokinin contain vesicular glutamate transporter type 3 (VGLUT3) in their synaptic terminals in hippocampus and isocortex of the rat
J. Somogyi, A. Baude, Y. Omori, H. Shimizu, S. El Mestikawy, M. Fukaya, R. Shigemoto, M. Watanabe, P. Somogyi, European Journal of Neuroscience 19 (2004) 552–569.
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J. Somogyi, A. Baude, Y. Omori, H. Shimizu, S. El Mestikawy, M. Fukaya, R. Shigemoto, M. Watanabe, P. Somogyi, European Journal of Neuroscience 19 (2004) 552–569.
2004 | Journal Article | IST-REx-ID: 2638
Immunocytochemical localization of the α1A subunit of the P/Q-type calcium channel in the rat cerebellum
Á. Kulik, K. Nakadate, A. Hagiwara, Y. Fukazawa, R. Luján, H. Saito, N. Suzuki, A. Futatsugi, K. Mikoshiba, M. Frotscher, R. Shigemoto, European Journal of Neuroscience 19 (2004) 2169–2178.
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Á. Kulik, K. Nakadate, A. Hagiwara, Y. Fukazawa, R. Luján, H. Saito, N. Suzuki, A. Futatsugi, K. Mikoshiba, M. Frotscher, R. Shigemoto, European Journal of Neuroscience 19 (2004) 2169–2178.
2004 | Journal Article | IST-REx-ID: 2644
Depression of GABAergic input to identified hippocampal neurons by group III metabotropic glutamate receptors in the rat
N. Kogo, Y. Dalezios, M. Capogna, F. Ferraguti, R. Shigemoto, P. Somogyi, European Journal of Neuroscience 19 (2004) 2727–2740.
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N. Kogo, Y. Dalezios, M. Capogna, F. Ferraguti, R. Shigemoto, P. Somogyi, European Journal of Neuroscience 19 (2004) 2727–2740.
2004 | Journal Article | IST-REx-ID: 2741
Uniform Lieb-Thirring inequality for the three-dimensional Pauli operator with a strong non-homogeneous magnetic field
L. Erdös, J. Solovej, Annales Henri Poincare 5 (2004) 671–741.
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L. Erdös, J. Solovej, Annales Henri Poincare 5 (2004) 671–741.
2004 | Journal Article | IST-REx-ID: 3810
Functional conversion between A-type and delayed rectifier K+ channels by membrane lipids
D. Oliver, C. Lien, M. Soom, T. Baukrowitz, P.M. Jonas, B. Fakler, Science 304 (2004) 265–70.
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D. Oliver, C. Lien, M. Soom, T. Baukrowitz, P.M. Jonas, B. Fakler, Science 304 (2004) 265–70.
2004 | Journal Article | IST-REx-ID: 4253
Coalescence in a Random Background
N.H. Barton, A. Etheridge, A. Sturm, Annals of Applied Probability 14 (2004) 754–785.
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N.H. Barton, A. Etheridge, A. Sturm, Annals of Applied Probability 14 (2004) 754–785.
2004 | Journal Article | IST-REx-ID: 3809
Enhanced synaptic plasticity in newly generated granule cells of the adult hippocampus
C. Schmidt Hieber, P.M. Jonas, J. Bischofberger, Nature 429 (2004) 184–7.
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C. Schmidt Hieber, P.M. Jonas, J. Bischofberger, Nature 429 (2004) 184–7.
2004 | Thesis | IST-REx-ID: 4424
Program verification by lazy abstraction
R. Jhala, Program Verification by Lazy Abstraction, University of California, Berkeley, 2004.
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R. Jhala, Program Verification by Lazy Abstraction, University of California, Berkeley, 2004.
2004 | Conference Paper | IST-REx-ID: 4445
A typed assembly language for real-time programs
T.A. Henzinger, C. Kirsch, in:, ACM, 2004, pp. 104–113.
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T.A. Henzinger, C. Kirsch, in:, ACM, 2004, pp. 104–113.
2004 | Journal Article | IST-REx-ID: 875
A common framework for understanding the origin of genetic dominance and evolutionary fates of gene duplications
F. Kondrashov, E. Koonin, Trends in Genetics 20 (2004) 287–291.
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F. Kondrashov, E. Koonin, Trends in Genetics 20 (2004) 287–291.
2003 | Journal Article | IST-REx-ID: 2629
High level of mGluR7 in the presynaptic active zones of select populations of GABAergic terminals innervating interneurons in the rat hippocampus
P. Somogyi, Y. Dalezios, R. Luján, J. Roberts, M. Watanabe, R. Shigemoto, European Journal of Neuroscience 17 (2003) 2503–2520.
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P. Somogyi, Y. Dalezios, R. Luján, J. Roberts, M. Watanabe, R. Shigemoto, European Journal of Neuroscience 17 (2003) 2503–2520.
2003 | Journal Article | IST-REx-ID: 2633
Co-expression of metabotropic glutamate receptor 7 and N-type Ca2+ channels in single cerebrocortical nerve terminals of adult rats
C. Millán, E. Castro, M. Torres, R. Shigemoto, J. Sánchez Prieto, Journal of Biological Chemistry 278 (2003) 23955–23962.
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C. Millán, E. Castro, M. Torres, R. Shigemoto, J. Sánchez Prieto, Journal of Biological Chemistry 278 (2003) 23955–23962.
2003 | Journal Article | IST-REx-ID: 2632
Cell type-dependent expression of HCN1 in the main olfactory bulb
N. Holderith, R. Shigemoto, Z. Nusser, European Journal of Neuroscience 18 (2003) 344–354.
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N. Holderith, R. Shigemoto, Z. Nusser, European Journal of Neuroscience 18 (2003) 344–354.
2002 | Conference Paper | IST-REx-ID: 1738
Dye-sensitization of titanium dioxide thin films by Ru(II)-bpp-bpy complexes
P. Falaras, K. Chryssou, T. Stergiopoulos, I. Arabatzis, G. Katsaros, V. Catalano, R. Kurtaran, A. Hugot Le Goff, M. Bernard, in:, SPIE, 2002, pp. 125–135.
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P. Falaras, K. Chryssou, T. Stergiopoulos, I. Arabatzis, G. Katsaros, V. Catalano, R. Kurtaran, A. Hugot Le Goff, M. Bernard, in:, SPIE, 2002, pp. 125–135.
2002 | Journal Article | IST-REx-ID: 2617 |
Cell type dependence and variability in the short-term plasticity of EPSCs in identified mouse hippocampal interneurones
A. Losonczy, L. Zhang, R. Shigemoto, P. Somogyi, Z. Nusser, Journal of Physiology 542 (2002) 193–210.
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A. Losonczy, L. Zhang, R. Shigemoto, P. Somogyi, Z. Nusser, Journal of Physiology 542 (2002) 193–210.
2002 | Thesis | IST-REx-ID: 4414
Games in open systems verification and synthesis
F. Mang, Games in Open Systems Verification and Synthesis, University of California, Berkeley, 2002.
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F. Mang, Games in Open Systems Verification and Synthesis, University of California, Berkeley, 2002.
2002 | Conference Paper | IST-REx-ID: 4631
Timed interfaces
L. De Alfaro, T.A. Henzinger, M. Stoelinga, in:, Proceedings of the 2nd International Conference on Embedded Software, ACM, 2002, pp. 108–122.
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L. De Alfaro, T.A. Henzinger, M. Stoelinga, in:, Proceedings of the 2nd International Conference on Embedded Software, ACM, 2002, pp. 108–122.
2002 | Journal Article | IST-REx-ID: 4259 |
Associations between cytoplasmic and nuclear loci in hybridizing populations
M. Orive, N.H. Barton, Genetics 162 (2002) 1469–1485.
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M. Orive, N.H. Barton, Genetics 162 (2002) 1469–1485.