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408 Publications
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2015 | Journal Article | IST-REx-ID: 1697 |

High accuracy decoding of dynamical motion from a large retinal population
O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
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O. Marre, V. Botella Soler, K. Simmons, T. Mora, G. Tkačik, M. Berry, PLoS Computational Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1698 |

The complexity of multi-mean-payoff and multi-energy games
Y. Velner, K. Chatterjee, L. Doyen, T.A. Henzinger, A. Rabinovich, J. Raskin, Information and Computation 241 (2015) 177–196.
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Y. Velner, K. Chatterjee, L. Doyen, T.A. Henzinger, A. Rabinovich, J. Raskin, Information and Computation 241 (2015) 177–196.
2015 | Journal Article | IST-REx-ID: 1699 |

Adaptive gene introgression after secondary contact
H. Uecker, D. Setter, J. Hermisson, Journal of Mathematical Biology 70 (2015) 1523–1580.
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H. Uecker, D. Setter, J. Hermisson, Journal of Mathematical Biology 70 (2015) 1523–1580.
2015 | Journal Article | IST-REx-ID: 1700 |

Ultralong-range order in the Fermi-Hubbard model with long-range interactions
E. Van Loon, M. Katsnelson, M. Lemeshko, Physical Review B 92 (2015).
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E. Van Loon, M. Katsnelson, M. Lemeshko, Physical Review B 92 (2015).
2015 | Journal Article | IST-REx-ID: 1701 |

Thermodynamics and signatures of criticality in a network of neurons
G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
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G. Tkačik, T. Mora, O. Marre, D. Amodei, S. Palmer, M. Berry Ii, W. Bialek, PNAS 112 (2015) 11508–11513.
2015 | Journal Article | IST-REx-ID: 1703
An evaluation of the genetic structure of seed sources and the maintenance of genetic diversity during establishment of two yellow box (Eucalyptus melliodora) seed-production areas
L. Broadhurst, G. Fifield, B. Vanzella, M. Pickup, Australian Journal of Botany 63 (2015) 455–466.
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| DOI
L. Broadhurst, G. Fifield, B. Vanzella, M. Pickup, Australian Journal of Botany 63 (2015) 455–466.
2015 | Journal Article | IST-REx-ID: 1704 |

Note on a family of monotone quantum relative entropies
A. Deuchert, C. Hainzl, R. Seiringer, Letters in Mathematical Physics 105 (2015) 1449–1466.
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A. Deuchert, C. Hainzl, R. Seiringer, Letters in Mathematical Physics 105 (2015) 1449–1466.
2015 | Conference Paper | IST-REx-ID: 1706 |

Multi-task and lifelong learning of kernels
A. Pentina, S. Ben David, in:, Springer, 2015, pp. 194–208.
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A. Pentina, S. Ben David, in:, Springer, 2015, pp. 194–208.
2015 | Journal Article | IST-REx-ID: 1709 |

Biological auctions with multiple rewards
J. Reiter, A. Kanodia, R. Gupta, M. Nowak, K. Chatterjee, Proceedings of the Royal Society of London Series B Biological Sciences 282 (2015).
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J. Reiter, A. Kanodia, R. Gupta, M. Nowak, K. Chatterjee, Proceedings of the Royal Society of London Series B Biological Sciences 282 (2015).
2015 | Journal Article | IST-REx-ID: 1710 |

Minimal resistance of curves under the single impact assumption
A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.
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A. Akopyan, A. Plakhov, Society for Industrial and Applied Mathematics 47 (2015) 2754–2769.
2015 | Journal Article | IST-REx-ID: 1712 |

Drosophila immune cell migration and adhesion during embryonic development and larval immune responses
A. Ratheesh, V. Belyaeva, D.E. Siekhaus, Current Opinion in Cell Biology 36 (2015) 71–79.
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A. Ratheesh, V. Belyaeva, D.E. Siekhaus, Current Opinion in Cell Biology 36 (2015) 71–79.
2015 | Conference Paper | IST-REx-ID: 1714
A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks
K. Chatterjee, A. Pavlogiannis, A. Kößler, U. Schmid, in:, Real-Time Systems Symposium, IEEE, 2015, pp. 118–127.
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K. Chatterjee, A. Pavlogiannis, A. Kößler, U. Schmid, in:, Real-Time Systems Symposium, IEEE, 2015, pp. 118–127.
2015 | Journal Article | IST-REx-ID: 1728
Ptch1 and Gli regulate Shh signalling dynamics via multiple mechanisms
M. Cohen, A. Kicheva, A. Ribeiro, R. Blassberg, K. Page, C. Barnes, J. Briscoe, Nature Communications 6 (2015).
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| DOI
M. Cohen, A. Kicheva, A. Ribeiro, R. Blassberg, K. Page, C. Barnes, J. Briscoe, Nature Communications 6 (2015).
2015 | Conference Paper | IST-REx-ID: 1729
From non-preemptive to preemptive scheduling using synchronization synthesis
P. Cerny, E. Clarke, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, R. Samanta, T. Tarrach, 9207 (2015) 180–197.
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P. Cerny, E. Clarke, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, R. Samanta, T. Tarrach, 9207 (2015) 180–197.
2015 | Journal Article | IST-REx-ID: 1730 |

Discrete systolic inequalities and decompositions of triangulated surfaces
É. Colin De Verdière, A. Hubard, A.N. de Mesmay, Discrete & Computational Geometry 53 (2015) 587–620.
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É. Colin De Verdière, A. Hubard, A.N. de Mesmay, Discrete & Computational Geometry 53 (2015) 587–620.
2015 | Journal Article | IST-REx-ID: 1731 |

Randomness for free
K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, Information and Computation 245 (2015) 3–16.
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K. Chatterjee, L. Doyen, H. Gimbert, T.A. Henzinger, Information and Computation 245 (2015) 3–16.
2015 | Conference Paper | IST-REx-ID: 1732 |

Qualitative analysis of POMDPs with temporal logic specifications for robotics applications
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, IEEE, 2015, pp. 325–330.
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| arXiv
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, IEEE, 2015, pp. 325–330.
2015 | Journal Article | IST-REx-ID: 1734
Recent advances in facial appearance capture
O. Klehm, F. Rousselle, M. Papas, D. Bradley, C. Hery, B. Bickel, W. Jarosz, T. Beeler, Computer Graphics Forum 34 (2015) 709–733.
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O. Klehm, F. Rousselle, M. Papas, D. Bradley, C. Hery, B. Bickel, W. Jarosz, T. Beeler, Computer Graphics Forum 34 (2015) 709–733.
2015 | Journal Article | IST-REx-ID: 1735 |

A dimension-reduced pressure solver for liquid simulations
R. Ando, N. Thürey, C.J. Wojtan, Computer Graphics Forum 34 (2015) 473–480.
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R. Ando, N. Thürey, C.J. Wojtan, Computer Graphics Forum 34 (2015) 473–480.
2015 | Journal Article | IST-REx-ID: 1788
Strong opto-electro-mechanical coupling in a silicon photonic crystal cavity
A. Pitanti, J.M. Fink, A. Safavi Naeini, J. Hill, C. Lei, A. Tredicucci, O. Painter, Optics Express 23 (2015) 3196–3208.
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A. Pitanti, J.M. Fink, A. Safavi Naeini, J. Hill, C. Lei, A. Tredicucci, O. Painter, Optics Express 23 (2015) 3196–3208.
2015 | Journal Article | IST-REx-ID: 1789 |

Loss-of-function variants of SETD5 cause intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome
Kuechler A, Zink A, Wieland T, Lüdecke H, Cremer K, Salviati L, Magini P, Najafi K, Zweier C, Czeschik J, Aretz S, Endele S, Tamburrino F, Pinato C, Clementi M, Gundlach J, Maylahn C, Mazzanti L, Wohlleber E, Schwarzmayr T, Kariminejad R, Schlessinger A, Wieczorek D, Strom T, Novarino G, Engels H. 2015. Loss-of-function variants of SETD5 cause intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome. European Journal of Human Genetics. 23(6), 753–760.
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Kuechler A, Zink A, Wieland T, Lüdecke H, Cremer K, Salviati L, Magini P, Najafi K, Zweier C, Czeschik J, Aretz S, Endele S, Tamburrino F, Pinato C, Clementi M, Gundlach J, Maylahn C, Mazzanti L, Wohlleber E, Schwarzmayr T, Kariminejad R, Schlessinger A, Wieczorek D, Strom T, Novarino G, Engels H. 2015. Loss-of-function variants of SETD5 cause intellectual disability and the core phenotype of microdeletion 3p25.3 syndrome. European Journal of Human Genetics. 23(6), 753–760.
2015 | Journal Article | IST-REx-ID: 1792
A Koksma-Hlawka inequality for general discrepancy systems
F. Pausinger, A. Svane, Journal of Complexity 31 (2015) 773–797.
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F. Pausinger, A. Svane, Journal of Complexity 31 (2015) 773–797.
2015 | Journal Article | IST-REx-ID: 1793 |

DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots
O. Symonova, C. Topp, H. Edelsbrunner, PLoS One 10 (2015).
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O. Symonova, C. Topp, H. Edelsbrunner, PLoS One 10 (2015).
2015 | Journal Article | IST-REx-ID: 1802
The schizophrenia risk gene product miR-137 alters presynaptic plasticity
S. Siegert, J. Seo, E. Kwon, A. Rudenko, S. Cho, W. Wang, Z. Flood, A. Martorell, M. Ericsson, A. Mungenast, L. Tsai, Nature Neuroscience 18 (2015) 1008–1016.
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S. Siegert, J. Seo, E. Kwon, A. Rudenko, S. Cho, W. Wang, Z. Flood, A. Martorell, M. Ericsson, A. Mungenast, L. Tsai, Nature Neuroscience 18 (2015) 1008–1016.
2015 | Journal Article | IST-REx-ID: 1803
Basolateral amygdala bidirectionally modulates stress induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway
D. Rei, X. Mason, J. Seo, J. Gräff, A. Rudenko, J. Wang, R. Rueda, S. Siegert, S. Cho, R. Canter, A. Mungenast, K. Deisseroth, L. Tsai, PNAS 112 (2015) 7291–7296.
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| DOI
D. Rei, X. Mason, J. Seo, J. Gräff, A. Rudenko, J. Wang, R. Rueda, S. Siegert, S. Cho, R. Canter, A. Mungenast, K. Deisseroth, L. Tsai, PNAS 112 (2015) 7291–7296.
2015 | Journal Article | IST-REx-ID: 1804 |

Transition to turbulence in Taylor-Couette ferrofluidic flow
S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
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S. Altmeyer, Y. Do, Y. Lai, Scientific Reports 5 (2015).
2015 | Journal Article | IST-REx-ID: 1805
Homological reconstruction and simplification in R3
D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, Computational Geometry: Theory and Applications 48 (2015) 606–621.
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D. Attali, U. Bauer, O. Devillers, M. Glisse, A. Lieutier, Computational Geometry: Theory and Applications 48 (2015) 606–621.
2015 | Journal Article | IST-REx-ID: 1807 |

Sharp interface limit for two components Bose-Einstein condensates
M. Goldman, J. Royo-Letelier, ESAIM - Control, Optimisation and Calculus of Variations 21 (2015) 603–624.
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M. Goldman, J. Royo-Letelier, ESAIM - Control, Optimisation and Calculus of Variations 21 (2015) 603–624.
2015 | Journal Article | IST-REx-ID: 1808
Guest editors' introduction to special issue on computational methods in systems biology
A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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A. Gupta, T.A. Henzinger, ACM Transactions on Modeling and Computer Simulation 25 (2015).
2015 | Journal Article | IST-REx-ID: 1809 |

Indirect genetic effects and the dynamics of social interactions
B. Trubenova, S. Novak, R. Hager, PLoS One 10 (2015).
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B. Trubenova, S. Novak, R. Hager, PLoS One 10 (2015).
2015 | Journal Article | IST-REx-ID: 1810 |

Antimicrobial interactions: Mechanisms and implications for drug discovery and resistance evolution
M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
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M.T. Bollenbach, Current Opinion in Microbiology 27 (2015) 1–9.
2015 | Journal Article | IST-REx-ID: 1811 |

Analytical evaluation of atomic form factors: Application to Rayleigh scattering
L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical Physics 56 (2015).
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L. Safari, J. Santos, P. Amaro, K. Jänkälä, F. Fratini, Journal of Mathematical Physics 56 (2015).
2015 | Journal Article | IST-REx-ID: 1812 |

Exotic roton excitations in quadrupolar Bose–Einstein condensates
M. Lahrz, M. Lemeshko, L. Mathey, New Journal of Physics 17 (2015).
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M. Lahrz, M. Lemeshko, L. Mathey, New Journal of Physics 17 (2015).
2015 | Journal Article | IST-REx-ID: 1813 |

Rotation of quantum impurities in the presence of a many-body environment
R. Schmidt, M. Lemeshko, Physical Review Letters 114 (2015).
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R. Schmidt, M. Lemeshko, Physical Review Letters 114 (2015).
2015 | Journal Article | IST-REx-ID: 1814 |

Water wave animation via wavefront parameter interpolation
S. Jeschke, C.J. Wojtan, ACM Transactions on Graphics 34 (2015).
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S. Jeschke, C.J. Wojtan, ACM Transactions on Graphics 34 (2015).
2015 | Journal Article | IST-REx-ID: 1817 |

YAP is essential for tissue tension to ensure vertebrate 3D body shape
Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.
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Porazinski S, Wang H, Asaoka Y, Behrndt M, Miyamoto T, Morita H, Hata S, Sasaki T, Krens G, Osada Y, Asaka S, Momoi A, Linton S, Miesfeld J, Link B, Senga T, Castillo Morales A, Urrutia A, Shimizu N, Nagase H, Matsuura S, Bagby S, Kondoh H, Nishina H, Heisenberg C-PJ, Furutani Seiki M. 2015. YAP is essential for tissue tension to ensure vertebrate 3D body shape. Nature. 521(7551), 217–221.
2015 | Journal Article | IST-REx-ID: 1818 |

Limits to adaptation along environmental gradients
J. Polechova, N.H. Barton, PNAS 112 (2015) 6401–6406.
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J. Polechova, N.H. Barton, PNAS 112 (2015) 6401–6406.
2015 | Journal Article | IST-REx-ID: 1819
Osmotic stress modulates the balance between exocytosis and clathrin mediated endocytosis in Arabidopsis thaliana
M. Zwiewka, T. Nodzyński, S. Robert, S. Vanneste, J. Friml, Molecular Plant 8 (2015) 1175–1187.
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| DOI
M. Zwiewka, T. Nodzyński, S. Robert, S. Vanneste, J. Friml, Molecular Plant 8 (2015) 1175–1187.
2015 | Conference Paper | IST-REx-ID: 1820 |

Optimal cost almost-sure reachability in POMDPs
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence , AAAI Press, 2015, pp. 3496–3502.
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| arXiv
K. Chatterjee, M. Chmelik, R. Gupta, A. Kanodia, in:, Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence , AAAI Press, 2015, pp. 3496–3502.
2015 | Journal Article | IST-REx-ID: 1823 |

Systematic discovery of drug interaction mechanisms
G. Chevereau, M.T. Bollenbach, Molecular Systems Biology 11 (2015).
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G. Chevereau, M.T. Bollenbach, Molecular Systems Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1824 |

Evolutionary games of condensates in coupled birth-death processes
J. Knebel, M. Weber, T.H. Krüger, E. Frey, Nature Communications 6 (2015).
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J. Knebel, M. Weber, T.H. Krüger, E. Frey, Nature Communications 6 (2015).
2015 | Journal Article | IST-REx-ID: 1827 |

Evolution of bow-tie architectures in biology
T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
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T. Friedlander, A. Mayo, T. Tlusty, U. Alon, PLoS Computational Biology 11 (2015).
2015 | Journal Article | IST-REx-ID: 1828 |

Invariant measures of genetic recombination process
A. Akopyan, S. Pirogov, A. Rybko, Journal of Statistical Physics 160 (2015) 163–167.
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A. Akopyan, S. Pirogov, A. Rybko, Journal of Statistical Physics 160 (2015) 163–167.
2015 | Journal Article | IST-REx-ID: 1831 |

Sociality and health: Impacts of sociality on disease susceptibility and transmission in animal and human societies
P. Kappeler, S. Cremer, C. Nunn, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 370 (2015).
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P. Kappeler, S. Cremer, C. Nunn, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 370 (2015).
2015 | Journal Article | IST-REx-ID: 1832 |

Aspect-oriented linearizability proofs
S. Chakraborty, T.A. Henzinger, A. Sezgin, V. Vafeiadis, Logical Methods in Computer Science 11 (2015).
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S. Chakraborty, T.A. Henzinger, A. Sezgin, V. Vafeiadis, Logical Methods in Computer Science 11 (2015).
2015 | Journal Article | IST-REx-ID: 1834 |

Low-dose sevoflurane promoteshippocampal neurogenesis and facilitates the development of dentate gyrus-dependent learning in neonatal rats
C. Chen, C. Wang, X. Zhao, T. Zhou, D. Xu, Z. Wang, Y. Wang, ASN Neuro 7 (2015).
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C. Chen, C. Wang, X. Zhao, T. Zhou, D. Xu, Z. Wang, Y. Wang, ASN Neuro 7 (2015).
2015 | Conference Paper | IST-REx-ID: 1835 |

Model checking gene regulatory networks
M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
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M. Giacobbe, C.C. Guet, A. Gupta, T.A. Henzinger, T. Paixao, T. Petrov, 9035 (2015) 469–483.
2015 | Conference Paper | IST-REx-ID: 1836
Segment abstraction for worst-case execution time analysis
P. Cerny, T.A. Henzinger, L. Kovács, A. Radhakrishna, J. Zwirchmayr, 9032 (2015) 105–131.
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| DOI
P. Cerny, T.A. Henzinger, L. Kovács, A. Radhakrishna, J. Zwirchmayr, 9032 (2015) 105–131.
2015 | Journal Article | IST-REx-ID: 1837 |

Subcritical versus supercritical transition to turbulence in curved pipes
J. Kühnen, P. Braunshier, M. Schwegel, H. Kuhlmann, B. Hof, Journal of Fluid Mechanics 770 (2015).
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| arXiv
J. Kühnen, P. Braunshier, M. Schwegel, H. Kuhlmann, B. Hof, Journal of Fluid Mechanics 770 (2015).
2015 | Conference Paper | IST-REx-ID: 1838 |

Assume-guarantee synthesis for concurrent reactive programs with partial information
R. Bloem, K. Chatterjee, S. Jacobs, R. Könighofer, in:, Springer, 2015, pp. 517–532.
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R. Bloem, K. Chatterjee, S. Jacobs, R. Könighofer, in:, Springer, 2015, pp. 517–532.
2015 | Conference Paper | IST-REx-ID: 1839 |

Multigain: A controller synthesis tool for MDPs with multiple mean-payoff objectives
T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, 9035 (2015) 181–187.
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T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, 9035 (2015) 181–187.
2015 | Journal Article | IST-REx-ID: 1840 |

Optimal Kullback-Leibler aggregation via information bottleneck
B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
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B. Geiger, T. Petrov, G. Kubin, H. Koeppl, IEEE Transactions on Automatic Control 60 (2015) 1010–1022.
2015 | Journal Article | IST-REx-ID: 1841 |

A new look at reweighted message passing
V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 37 (2015) 919–930.
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V. Kolmogorov, IEEE Transactions on Pattern Analysis and Machine Intelligence 37 (2015) 919–930.
2015 | Journal Article | IST-REx-ID: 1845 |

Excitement about inhibitory presynaptic terminals
D.H. Vandael, C. Espinoza Martinez, P.M. Jonas, Neuron 85 (2015) 1149–1151.
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D.H. Vandael, C. Espinoza Martinez, P.M. Jonas, Neuron 85 (2015) 1149–1151.
2015 | Journal Article | IST-REx-ID: 1846 |

Refinement checking on parametric modal transition systems
N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica 52 (2015) 269–297.
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N. Beneš, J. Kretinsky, K. Larsen, M. Möller, S. Sickert, J. Srba, Acta Informatica 52 (2015) 269–297.
2015 | Journal Article | IST-REx-ID: 1847
ABP1: Finally docking
P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.
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| DOI
P. Grones, J. Friml, Molecular Plant 8 (2015) 356–358.
2015 | Journal Article | IST-REx-ID: 1848 |

FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors
Schwamb B, Pick R, Fernández S, Völp K, Heering J, Dötsch V, Bösser S, Jung J, Beinoravičiute Kellner R, Wesely J, Zörnig I, Hammerschmidt M, Nowak M, Penzel R, Zatloukal K, Joos S, Rieker R, Agaimy A, Söder S, Reid Lombardo K, Kendrick M, Bardsley M, Hayashi Y, Asuzu D, Syed S, Ördög T, Zörnig M. 2015. FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors. International Journal of Cancer. 137(6), 1318–1329.
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| PubMed | Europe PMC
Schwamb B, Pick R, Fernández S, Völp K, Heering J, Dötsch V, Bösser S, Jung J, Beinoravičiute Kellner R, Wesely J, Zörnig I, Hammerschmidt M, Nowak M, Penzel R, Zatloukal K, Joos S, Rieker R, Agaimy A, Söder S, Reid Lombardo K, Kendrick M, Bardsley M, Hayashi Y, Asuzu D, Syed S, Ördög T, Zörnig M. 2015. FAM96A is a novel pro-apoptotic tumor suppressor in gastrointestinal stromal tumors. International Journal of Cancer. 137(6), 1318–1329.
2015 | Journal Article | IST-REx-ID: 1849
Calcium is an organizer of cell polarity in plants
E. Himschoot, T. Beeckman, J. Friml, S. Vanneste, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 2168–2172.
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| DOI
E. Himschoot, T. Beeckman, J. Friml, S. Vanneste, Biochimica et Biophysica Acta - Molecular Cell Research 1853 (2015) 2168–2172.
2015 | Journal Article | IST-REx-ID: 1850 |

Fungal disease dynamics in insect societies: Optimal killing rates and the ambivalent effect of high social interaction rates
S. Novak, S. Cremer, Journal of Theoretical Biology 372 (2015) 54–64.
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S. Novak, S. Cremer, Journal of Theoretical Biology 372 (2015) 54–64.
2015 | Journal Article | IST-REx-ID: 1856 |

Measuring and synthesizing systems in probabilistic environments
K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, Journal of the ACM 62 (2015).
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K. Chatterjee, T.A. Henzinger, B. Jobstmann, R. Singh, Journal of the ACM 62 (2015).
2015 | Conference Paper | IST-REx-ID: 1857 |

Curriculum learning of multiple tasks
A. Pentina, V. Sharmanska, C. Lampert, in:, IEEE, 2015, pp. 5492–5500.
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A. Pentina, V. Sharmanska, C. Lampert, in:, IEEE, 2015, pp. 5492–5500.
2015 | Conference Paper | IST-REx-ID: 1858 |

Predicting the future behavior of a time-varying probability distribution
C. Lampert, in:, IEEE, 2015, pp. 942–950.
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C. Lampert, in:, IEEE, 2015, pp. 942–950.
2015 | Conference Paper | IST-REx-ID: 1859 |

A multi-plane block-coordinate Frank-Wolfe algorithm for training structural SVMs with a costly max-oracle
N. Shah, V. Kolmogorov, C. Lampert, in:, IEEE, 2015, pp. 2737–2745.
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N. Shah, V. Kolmogorov, C. Lampert, in:, IEEE, 2015, pp. 2737–2745.
2015 | Conference Paper | IST-REx-ID: 1860 |

Classifier adaptation at prediction time
A. Royer, C. Lampert, in:, IEEE, 2015, pp. 1401–1409.
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A. Royer, C. Lampert, in:, IEEE, 2015, pp. 1401–1409.
2015 | Journal Article | IST-REx-ID: 1861
Moment-based methods for parameter inference and experiment design for stochastic biochemical reaction networks
J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
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J. Ruess, J. Lygeros, ACM Transactions on Modeling and Computer Simulation 25 (2015).
2015 | Journal Article | IST-REx-ID: 1864 |

The Altshuler–Shklovskii formulas for random band matrices II: The general case
L. Erdös, A. Knowles, Annales Henri Poincare 16 (2015) 709–799.
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L. Erdös, A. Knowles, Annales Henri Poincare 16 (2015) 709–799.
2015 | Journal Article | IST-REx-ID: 1865
Plant embryogenesis requires AUX/LAX-mediated auxin influx
H. Robert, W. Grunewald, M. Sauer, B. Cannoot, M. Soriano, R. Swarup, D. Weijers, M. Bennett, K. Boutilier, J. Friml, Development 142 (2015) 702–711.
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H. Robert, W. Grunewald, M. Sauer, B. Cannoot, M. Soriano, R. Swarup, D. Weijers, M. Bennett, K. Boutilier, J. Friml, Development 142 (2015) 702–711.
2015 | Journal Article | IST-REx-ID: 1866
The equivalence problem for finite automata: Technical perspective
T.A. Henzinger, J. Raskin, Communications of the ACM 58 (2015) 86–86.
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T.A. Henzinger, J. Raskin, Communications of the ACM 58 (2015) 86–86.
2015 | Journal Article | IST-REx-ID: 1867
Quantification of riboflavin, flavin mononucleotide, and flavin adenine dinucleotide in mammalian model cells by CE with LED-induced fluorescence detection
J. Hühner, Á. Inglés Prieto, C. Neusüß, M. Lämmerhofer, H.L. Janovjak, Electrophoresis 36 (2015) 518–525.
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J. Hühner, Á. Inglés Prieto, C. Neusüß, M. Lämmerhofer, H.L. Janovjak, Electrophoresis 36 (2015) 518–525.
2015 | Journal Article | IST-REx-ID: 1868
Early effect in time-dependent, high-dimensional nonlinear dynamical systems with multiple resonances
Y. Park, Y. Do, S. Altmeyer, Y. Lai, G. Lee, Physical Review E 91 (2015).
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Y. Park, Y. Do, S. Altmeyer, Y. Lai, G. Lee, Physical Review E 91 (2015).
2015 | Journal Article | IST-REx-ID: 1871 |

Auxin transporters and binding proteins at a glance
P. Grones, J. Friml, Journal of Cell Science 128 (2015) 1–7.
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P. Grones, J. Friml, Journal of Cell Science 128 (2015) 1–7.
2015 | Journal Article | IST-REx-ID: 1873 |

POMDPs under probabilistic semantics
K. Chatterjee, M. Chmelik, Artificial Intelligence 221 (2015) 46–72.
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K. Chatterjee, M. Chmelik, Artificial Intelligence 221 (2015) 46–72.
2015 | Journal Article | IST-REx-ID: 1874
A three-plane architectonic atlas of the rat hippocampal region
C.N. Boccara, L. Kjønigsen, I. Hammer, J. Bjaalie, T. Leergaard, M. Witter, Hippocampus 25 (2015) 838–857.
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C.N. Boccara, L. Kjønigsen, I. Hammer, J. Bjaalie, T. Leergaard, M. Witter, Hippocampus 25 (2015) 838–857.
2015 | Journal Article | IST-REx-ID: 1878
Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula
E. Cires Rodriguez, J. Prieto, Journal of Plant Research 128 (2015) 223–238.
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E. Cires Rodriguez, J. Prieto, Journal of Plant Research 128 (2015) 223–238.
2015 | Journal Article | IST-REx-ID: 1879 |

Developing 3D SEM in a broad biological context
Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96.
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Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96.
2015 | Journal Article | IST-REx-ID: 1880 |

Superfluid behavior of a Bose-Einstein condensate in a random potential
M. Könenberg, T. Moser, R. Seiringer, J. Yngvason, New Journal of Physics 17 (2015).
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M. Könenberg, T. Moser, R. Seiringer, J. Yngvason, New Journal of Physics 17 (2015).
2015 | Conference Paper | IST-REx-ID: 1882 |

Compositionality for quantitative specifications
U. Fahrenberg, J. Kretinsky, A. Legay, L. Traonouez, in:, Springer, 2015, pp. 306–324.
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U. Fahrenberg, J. Kretinsky, A. Legay, L. Traonouez, in:, Springer, 2015, pp. 306–324.
2015 | Journal Article | IST-REx-ID: 1883 |

Anomalous scaling in an age-dependent branching model
S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, K. Klemm, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
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S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, K. Klemm, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
2015 | Journal Article | IST-REx-ID: 1885 |

Positional information, positional error, and readout precision in morphogenesis: A mathematical framework
G. Tkačik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
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G. Tkačik, J. Dubuis, M. Petkova, T. Gregor, Genetics 199 (2015) 39–59.
2015 | Journal Article | IST-REx-ID: 1938
On the distribution of local extrema in quantum chaos
F. Pausinger, S. Steinerberger, Physics Letters, Section A 379 (2015) 535–541.
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F. Pausinger, S. Steinerberger, Physics Letters, Section A 379 (2015) 535–541.
2015 | Journal Article | IST-REx-ID: 1940 |

Optimizing information flow in small genetic networks. IV. Spatial coupling
T.R. Sokolowski, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
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T.R. Sokolowski, G. Tkačik, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).
2015 | Journal Article | IST-REx-ID: 1944
Intracellular trafficking and PIN-mediated cell polarity during tropic responses in plants
H. Rakusová, M. Fendrych, J. Friml, Current Opinion in Plant Biology 23 (2015) 116–123.
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H. Rakusová, M. Fendrych, J. Friml, Current Opinion in Plant Biology 23 (2015) 116–123.
2015 | Journal Article | IST-REx-ID: 6118 |

Environmental CO2 inhibits Caenorhabditis elegans egg-laying by modulating olfactory neurons and evokes widespread changes in neural activity
L.A. Fenk, M. de Bono, Proceedings of the National Academy of Sciences 112 (2015) E3525–E3534.
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L.A. Fenk, M. de Bono, Proceedings of the National Academy of Sciences 112 (2015) E3525–E3534.
2015 | Journal Article | IST-REx-ID: 6120 |

Decoding a neural circuit controlling global animal state in C. elegans
P. Laurent, Z. Soltesz, G.M. Nelson, C. Chen, F. Arellano-Carbajal, E. Levy, M. de Bono, ELife 4 (2015).
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P. Laurent, Z. Soltesz, G.M. Nelson, C. Chen, F. Arellano-Carbajal, E. Levy, M. de Bono, ELife 4 (2015).
2015 | Journal Article | IST-REx-ID: 6507
Structural basis for collagen recognition by the immune receptor OSCAR
L. Zhou, J.M. Hinerman, M. Blaszczyk, J.L.C. Miller, D.G. Conrady, A.D. Barrow, D.Y. Chirgadze, D. Bihan, R.W. Farndale, A.B. Herr, Blood 127 (2015) 529–537.
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L. Zhou, J.M. Hinerman, M. Blaszczyk, J.L.C. Miller, D.G. Conrady, A.D. Barrow, D.Y. Chirgadze, D. Bihan, R.W. Farndale, A.B. Herr, Blood 127 (2015) 529–537.
2015 | Journal Article | IST-REx-ID: 6736 |

Scaling exponent of list decoders with applications to polar codes
M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 4838–4851.
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M. Mondelli, H. Hassani, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 4838–4851.
2015 | Journal Article | IST-REx-ID: 6737 |

Achieving Marton’s region for broadcast channels using polar codes
M. Mondelli, H. Hassani, I. Sason, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 783–800.
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M. Mondelli, H. Hassani, I. Sason, R. Urbanke, IEEE Transactions on Information Theory 61 (2015) 783–800.
2015 | Journal Article | IST-REx-ID: 866
Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
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C. Kretz, M. Dai, O. Soylemez, A. Yee, K. Desch, D. Siemieniak, K. Tomberg, F. Kondrashov, F. Meng, D. Ginsburg, PNAS 112 (2015) 9328–9333.
2015 | Journal Article | IST-REx-ID: 886
Topological features of rugged fitness landscapes in sequence space
D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
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D. Kondrashov, F. Kondrashov, Trends in Genetics 31 (2015) 24–33.
2015 | Journal Article | IST-REx-ID: 9017
Structural insight into how the human helicase subunit MCM2 may act as a histone chaperone together with ASF1 at the replication fork
N. Richet, D. Liu, P. Legrand, C. Velours, A. Corpet, A. Gaubert, M.M. Bakail, G. Moal-Raisin, R. Guerois, C. Compper, A. Besle, B. Guichard, G. Almouzni, F. Ochsenbein, Nucleic Acids Research 43 (2015) 1905–1917.
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| PubMed | Europe PMC
N. Richet, D. Liu, P. Legrand, C. Velours, A. Corpet, A. Gaubert, M.M. Bakail, G. Moal-Raisin, R. Guerois, C. Compper, A. Besle, B. Guichard, G. Almouzni, F. Ochsenbein, Nucleic Acids Research 43 (2015) 1905–1917.
2015 | Journal Article | IST-REx-ID: 9057 |

Artificial rheotaxis
J.A. Palacci, S. Sacanna, A. Abramian, J. Barral, K. Hanson, A.Y. Grosberg, D.J. Pine, P.M. Chaikin, Science Advances 1 (2015).
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J.A. Palacci, S. Sacanna, A. Abramian, J. Barral, K. Hanson, A.Y. Grosberg, D.J. Pine, P.M. Chaikin, Science Advances 1 (2015).
2015 | Journal Article | IST-REx-ID: 906
Recent origin of the methacrylate redox system in Geobacter sulfurreducens AM-1 through horizontal gene transfer
O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
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O. Arkhipova, M. Meer, G. Mikoulinskaia, M. Zakharova, A. Galushko, V. Akimenko, F. Kondrashov, PLoS One 10 (2015).
2015 | Journal Article | IST-REx-ID: 9141 |

A three-dimensional map of tidal dissipation over abyssal hills
A. Lefauve, C.J. Muller, A. Melet, Journal of Geophysical Research: Oceans 120 (2015) 4760–4777.
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A. Lefauve, C.J. Muller, A. Melet, Journal of Geophysical Research: Oceans 120 (2015) 4760–4777.
2015 | Journal Article | IST-REx-ID: 924
Dynamic model of heat and mass transfer in an unsaturated porous wick of capillary pumped loop
R. Boubaker, V. Platel, A. Bergès, M. Bancelin, E.B. Hannezo, Applied Thermal Engineering 76 (2015) 1–8.
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R. Boubaker, V. Platel, A. Bergès, M. Bancelin, E.B. Hannezo, Applied Thermal Engineering 76 (2015) 1–8.
2015 | Journal Article | IST-REx-ID: 928 |

Assembly and positioning of actomyosin rings by contractility and planar cell polarity
I. Sehring, P. Recho, E. Denker, M. Kourakis, B. Mathiesen, E.B. Hannezo, B. Dong, D. Jiang, ELife 4 (2015).
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I. Sehring, P. Recho, E. Denker, M. Kourakis, B. Mathiesen, E.B. Hannezo, B. Dong, D. Jiang, ELife 4 (2015).
2015 | Journal Article | IST-REx-ID: 120
Direct observation of particle interactions and clustering in charged granular streams
V. Lee, S.R. Waitukaitis, M. Miskin, H. Jaeger, Nature Physics 11 (2015) 733–737.
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V. Lee, S.R. Waitukaitis, M. Miskin, H. Jaeger, Nature Physics 11 (2015) 733–737.
2015 | Journal Article | IST-REx-ID: 121 |

Origami multistability: From single vertices to metasheets
S.R. Waitukaitis, R. Menaut, B. Chen, M. Van Hecke, APS Physics, Physical Review Letters 114 (2015).
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S.R. Waitukaitis, R. Menaut, B. Chen, M. Van Hecke, APS Physics, Physical Review Letters 114 (2015).
2015 | Journal Article | IST-REx-ID: 1311
Finite speed of propagation and waiting times for the stochastic porous medium equation: A unifying approach
J.L. Fischer, G. Grün, SIAM Journal on Mathematical Analysis 47 (2015) 825–854.
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J.L. Fischer, G. Grün, SIAM Journal on Mathematical Analysis 47 (2015) 825–854.
2015 | Journal Article | IST-REx-ID: 1313
Estimates on front propagation for nonlinear higher-order parabolic equations: An algorithmic approach
J.L. Fischer, Interfaces and Free Boundaries 17 (2015) 1–20.
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J.L. Fischer, Interfaces and Free Boundaries 17 (2015) 1–20.
2015 | Journal Article | IST-REx-ID: 1314
A posteriori modeling error estimates for the assumption of perfect incompressibility in the Navier-Stokes equation
J.L. Fischer, SIAM Journal on Numerical Analysis 53 (2015) 2178–2205.
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J.L. Fischer, SIAM Journal on Numerical Analysis 53 (2015) 2178–2205.
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