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9096 Publications
2016 | Journal Article | IST-REx-ID: 7761
Pinning susceptibility: The effect of dilute, quenched disorder on jamming
A.L. Graves, S. Nashed, E. Padgett, C.P. Goodrich, A.J. Liu, J.P. Sethna, Physical Review Letters 116 (2016).
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A.L. Graves, S. Nashed, E. Padgett, C.P. Goodrich, A.J. Liu, J.P. Sethna, Physical Review Letters 116 (2016).
2016 | Journal Article | IST-REx-ID: 7764
Spatial structure of states of self stress in jammed systems
D.M. Sussman, C.P. Goodrich, A.J. Liu, Soft Matter 12 (2016) 3982–3990.
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D.M. Sussman, C.P. Goodrich, A.J. Liu, Soft Matter 12 (2016) 3982–3990.
2016 | Journal Article | IST-REx-ID: 7763
Higher-order wavelet reconstruction/differentiation filters and Gibbs phenomena
R. Lombardini, R. Acevedo, A. Kuczala, K.P. Keys, C.P. Goodrich, B.R. Johnson, Journal of Computational Physics 305 (2016) 244–262.
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R. Lombardini, R. Acevedo, A. Kuczala, K.P. Keys, C.P. Goodrich, B.R. Johnson, Journal of Computational Physics 305 (2016) 244–262.
2016 | Journal Article | IST-REx-ID: 7760
Scaling ansatz for the jamming transition
C.P. Goodrich, A.J. Liu, J.P. Sethna, Proceedings of the National Academy of Sciences 113 (2016) 9745–9750.
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C.P. Goodrich, A.J. Liu, J.P. Sethna, Proceedings of the National Academy of Sciences 113 (2016) 9745–9750.
2016 | Journal Article | IST-REx-ID: 786 |
Are lock free concurrent algorithms practically wait free
D.-A. Alistarh, K. Censor Hillel, N. Shavit, Journal of the ACM 63 (2016).
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D.-A. Alistarh, K. Censor Hillel, N. Shavit, Journal of the ACM 63 (2016).
2016 | Conference Paper | IST-REx-ID: 785
Lease/Release: Architectural support for scaling contended data structures
S. Haider, W. Hasenplaugh, D.-A. Alistarh, in:, ACM, 2016.
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S. Haider, W. Hasenplaugh, D.-A. Alistarh, in:, ACM, 2016.
2016 | Journal Article | IST-REx-ID: 8020 |
Unmasking latent inhibitory connections in human cortex to reveal dormant cortical memories
H.C. Barron, T.P. Vogels, U.E. Emir, T.R. Makin, J. O’Shea, S. Clare, S. Jbabdi, R.J. Dolan, T.E.J. Behrens, Neuron 90 (2016) 191–203.
[Published Version]
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H.C. Barron, T.P. Vogels, U.E. Emir, T.R. Makin, J. O’Shea, S. Clare, S. Jbabdi, R.J. Dolan, T.E.J. Behrens, Neuron 90 (2016) 191–203.
2016 | Conference Paper | IST-REx-ID: 8094 |
Self-organized control of an tendon driven arm by differential extrinsic plasticity
G.S. Martius, R. Hostettler, A. Knoll, R. Der, in:, Proceedings of the Artificial Life Conference 2016, MIT Press, 2016, pp. 142–143.
[Published Version]
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G.S. Martius, R. Hostettler, A. Knoll, R. Der, in:, Proceedings of the Artificial Life Conference 2016, MIT Press, 2016, pp. 142–143.
2016 | Journal Article | IST-REx-ID: 813
Nucleic acid binding by Mason-Pfizer monkey virus CA promotes virus assembly and genome packaging
T. Füzik, R. Píchalová, F.K. Schur, K. Strohalmová, I. Křížová, R. Hadravová, M. Rumlová, J. Briggs, P. Ulbrich, T. Ruml, Journal of Virology 90 (2016) 4593–4603.
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T. Füzik, R. Píchalová, F.K. Schur, K. Strohalmová, I. Křížová, R. Hadravová, M. Rumlová, J. Briggs, P. Ulbrich, T. Ruml, Journal of Virology 90 (2016) 4593–4603.
2016 | Preprint | IST-REx-ID: 8128 |
Receptive field formation by interacting excitatory and inhibitory synaptic plasticity
C. Clopath, T.P. Vogels, R.C. Froemke, H. Sprekeler, BioRxiv (2016).
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C. Clopath, T.P. Vogels, R.C. Froemke, H. Sprekeler, BioRxiv (2016).
2016 | Journal Article | IST-REx-ID: 816
An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation
F.K. Schur, M. Obr, W. Hagen, W. Wan, A. Jakobi, J. Kirkpatrick, C. Sachse, H. Kraüsslich, J. Briggs, Science 353 (2016) 506–508.
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F.K. Schur, M. Obr, W. Hagen, W. Wan, A. Jakobi, J. Kirkpatrick, C. Sachse, H. Kraüsslich, J. Briggs, Science 353 (2016) 506–508.
2016 | Journal Article | IST-REx-ID: 8241 |
Proof of concept study with an HER-2 mimotope anticancer vaccine deduced from a novel AAV-mimotope library platform
J. Singer, K. Manzano-Szalai, J. Singer, K. Thell, A. Bentley-Lukschal, C. Stremnitzer, F. Roth-Walter, M. Weghofer, M. Ritter, K. Pino Tossi, M. Hörer, U. Michaelis, E. Jensen-Jarolim, OncoImmunology 5 (2016).
[Published Version]
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J. Singer, K. Manzano-Szalai, J. Singer, K. Thell, A. Bentley-Lukschal, C. Stremnitzer, F. Roth-Walter, M. Weghofer, M. Ritter, K. Pino Tossi, M. Hörer, U. Michaelis, E. Jensen-Jarolim, OncoImmunology 5 (2016).
2016 | Conference Paper | IST-REx-ID: 8302 |
Enhancing bitcoin security and performance with strong consistency via collective signing
E. Kokoris Kogias, P. Jovanovic, N. Gailly, I. Khoffi, L. Gasser, B. Ford, in:, Proceedings of the 25th USENIX Conference on Security Symposium, USENIX Association, 2016, pp. 279–296.
[Published Version]
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| arXiv
E. Kokoris Kogias, P. Jovanovic, N. Gailly, I. Khoffi, L. Gasser, B. Ford, in:, Proceedings of the 25th USENIX Conference on Security Symposium, USENIX Association, 2016, pp. 279–296.
2016 | Conference Paper | IST-REx-ID: 8300
TRM-SIoT: A scalable hybrid trust & reputation model for the social Internet of Things
E. Kokoris Kogias, O. Voutyras, T. Varvarigou, in:, 2016 IEEE 21st International Conference on Emerging Technologies and Factory Automation, IEEE, 2016.
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E. Kokoris Kogias, O. Voutyras, T. Varvarigou, in:, 2016 IEEE 21st International Conference on Emerging Technologies and Factory Automation, IEEE, 2016.
2016 | Journal Article | IST-REx-ID: 8455
Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3labelling: Application to the 50S ribosome subunit
V. Kurauskas, E. Crublet, P. Macek, R. Kerfah, D.F. Gauto, J. Boisbouvier, P. Schanda, Chemical Communications 52 (2016) 9558–9561.
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V. Kurauskas, E. Crublet, P. Macek, R. Kerfah, D.F. Gauto, J. Boisbouvier, P. Schanda, Chemical Communications 52 (2016) 9558–9561.
2016 | Journal Article | IST-REx-ID: 8497
Kirkwood gaps and diffusion along mean motion resonances in the restricted planar three-body problem
J. Féjoz, M. Guàrdia, V. Kaloshin, P. Roldán, Journal of the European Mathematical Society 18 (2016) 2315–2403.
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J. Féjoz, M. Guàrdia, V. Kaloshin, P. Roldán, Journal of the European Mathematical Society 18 (2016) 2315–2403.
2016 | Journal Article | IST-REx-ID: 850
Local fitness landscape of the green fluorescent protein
Sarkisyan K, Bolotin D, Meer M, Usmanova D, Mishin A, Sharonov G, Ivankov D, Bozhanova N, Baranov M, Soylemez O, Bogatyreva N, Vlasov P, Egorov E, Logacheva M, Kondrashov A, Chudakov D, Putintseva E, Mamedov I, Tawfik D, Lukyanov K, Kondrashov F. 2016. Local fitness landscape of the green fluorescent protein. Nature. 533, 397–401.
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Sarkisyan K, Bolotin D, Meer M, Usmanova D, Mishin A, Sharonov G, Ivankov D, Bozhanova N, Baranov M, Soylemez O, Bogatyreva N, Vlasov P, Egorov E, Logacheva M, Kondrashov A, Chudakov D, Putintseva E, Mamedov I, Tawfik D, Lukyanov K, Kondrashov F. 2016. Local fitness landscape of the green fluorescent protein. Nature. 533, 397–401.
2016 | Journal Article | IST-REx-ID: 8496
An integrable deformation of an ellipse of small eccentricity is an ellipse
A. Avila, J. De Simoi, V. Kaloshin, Annals of Mathematics 184 (2016) 527–558.
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A. Avila, J. De Simoi, V. Kaloshin, Annals of Mathematics 184 (2016) 527–558.
2016 | Journal Article | IST-REx-ID: 896
Structure and evolutionary history of a large family of NLR proteins in the zebrafish
K. Howe, P. Schiffer, J. Zielinski, T. Wiehe, G. Laird, J. Marioni, O. Soylemez, F. Kondrashov, M. Leptin, Open Biology 6 (2016).
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K. Howe, P. Schiffer, J. Zielinski, T. Wiehe, G. Laird, J. Marioni, O. Soylemez, F. Kondrashov, M. Leptin, Open Biology 6 (2016).
2016 | Journal Article | IST-REx-ID: 9140 |
Scaling of precipitation extremes with temperature in the French Mediterranean region: What explains the hook shape?
P. Drobinski, B. Alonzo, S. Bastin, N.D. Silva, C.J. Muller, Journal of Geophysical Research: Atmospheres 121 (2016) 3100–3119.
[Published Version]
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P. Drobinski, B. Alonzo, S. Bastin, N.D. Silva, C.J. Muller, Journal of Geophysical Research: Atmospheres 121 (2016) 3100–3119.
2016 | Journal Article | IST-REx-ID: 92
Relating the structure of geminal Amido Esters to their molecular hyperpolarizability
J. Cole, T. Lin, C. Ashcroft, J. Pérez Moreno, Y. Tan, P. Venkatesan, A.P. Higginbotham, P. Pattison, A. Edwards, R. Piltz, K. Clays, A. Ilangovan, Journal of Physical Chemistry C 120 (2016) 29439–29448.
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J. Cole, T. Lin, C. Ashcroft, J. Pérez Moreno, Y. Tan, P. Venkatesan, A.P. Higginbotham, P. Pattison, A. Edwards, R. Piltz, K. Clays, A. Ilangovan, Journal of Physical Chemistry C 120 (2016) 29439–29448.
2016 | Journal Article | IST-REx-ID: 930
Defining the clonal dynamics leading to mouse skin tumour initiation
A. Sánchez Danés, E.B. Hannezo, J. Larsimont, M. Liagre, K. Youssef, B. Simons, C. Blanpain, Nature 536 (2016) 298–303.
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A. Sánchez Danés, E.B. Hannezo, J. Larsimont, M. Liagre, K. Youssef, B. Simons, C. Blanpain, Nature 536 (2016) 298–303.
2016 | Journal Article | IST-REx-ID: 9591 |
Cycles and matchings in randomly perturbed digraphs and hypergraphs
M. Krivelevich, M.A. Kwan, B. Sudakov, Combinatorics, Probability and Computing 25 (2016) 909–927.
[Preprint]
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M. Krivelevich, M.A. Kwan, B. Sudakov, Combinatorics, Probability and Computing 25 (2016) 909–927.
2016 | Journal Article | IST-REx-ID: 9654
Structure of RNA polymerase I transcribing ribosomal DNA genes
S. Neyer, M. Kunz, C. Geiss, M. Hantsche, V.-V. Hodirnau, A. Seybert, C. Engel, M.P. Scheffer, P. Cramer, A.S. Frangakis, Nature 540 (2016) 607–610.
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| PubMed | Europe PMC
S. Neyer, M. Kunz, C. Geiss, M. Hantsche, V.-V. Hodirnau, A. Seybert, C. Engel, M.P. Scheffer, P. Cramer, A.S. Frangakis, Nature 540 (2016) 607–610.
2016 | Journal Article | IST-REx-ID: 1197 |
Error-robust modes of the retinal population code
J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, PLoS Computational Biology 12 (2016).
[Published Version]
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J. Prentice, O. Marre, M. Ioffe, A. Loback, G. Tkačik, M. Berry, PLoS Computational Biology 12 (2016).
2016 | Research Data Reference | IST-REx-ID: 9720 |
Data from: A sting in the spit: widespread cross-infection of multiple RNA viruses across wild and managed bees
D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).
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D. Mcmahon, M. Fürst, J. Caspar, P. Theodorou, M. Brown, R. Paxton, (2016).
2016 | Journal Article | IST-REx-ID: 983 |
Thermoelectric transport signatures of Dirac composite fermions in the half-filled Landau level
A. Potter, M. Serbyn, A. Vishwanath, Physical Review X 6 (2016).
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A. Potter, M. Serbyn, A. Vishwanath, Physical Review X 6 (2016).
2016 | Journal Article | IST-REx-ID: 985 |
Landau Level Splittings, Phase Transitions, and Nonuniform Charge Distribution in Trilayer Graphene
L. Campos, T. Taychatanapat, M. Serbyn, K. Surakitbovorn, K. Watanabe, T. Taniguchi, D. Abanin, P. Jarillo Herrero, Physical Review Letters 117 (2016).
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L. Campos, T. Taychatanapat, M. Serbyn, K. Surakitbovorn, K. Watanabe, T. Taniguchi, D. Abanin, P. Jarillo Herrero, Physical Review Letters 117 (2016).
2016 | Journal Article | IST-REx-ID: 1158 |
Shedding light on the grey zone of speciation along a continuum of genomic divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, PLoS Biology 14 (2016).
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C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, PLoS Biology 14 (2016).
2016 | Journal Article | IST-REx-ID: 1167 |
Beyond the hypercube evolutionary accessibility of fitness landscapes with realistic mutational networks
M.P. Zagórski, Z. Burda, B. Wacław, PLoS Computational Biology 12 (2016).
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M.P. Zagórski, Z. Burda, B. Wacław, PLoS Computational Biology 12 (2016).
2016 | Research Data Reference | IST-REx-ID: 9867
Experimental game instructions
C. Hilbe, K. Hagel, M. Milinski, (2016).
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C. Hilbe, K. Hagel, M. Milinski, (2016).
2016 | Research Data Reference | IST-REx-ID: 9862
Simulation study to test the robustness of ABC in face of recent times of divergence
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
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C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
2016 | Research Data Reference | IST-REx-ID: 9863
Accessions of surveyed individuals, geographic locations and summary statistics
C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
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C. Roux, C. Fraisse, J. Romiguier, Y. Anciaux, N. Galtier, N. Bierne, (2016).
2016 | Research Data Reference | IST-REx-ID: 9866
ZIP-archived directory containing all data and computer programs
M.P. Zagórski, Z. Burda, B. Wacław, (2016).
[Published Version]
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M.P. Zagórski, Z. Burda, B. Wacław, (2016).
2016 | Journal Article | IST-REx-ID: 8453
Cross-correlated relaxation of dipolar coupling and chemical-shift anisotropy in magic-angle spinning R1ρ NMR measurements: Application to protein backbone dynamics measurements
V. Kurauskas, E. Weber, A. Hessel, I. Ayala, D. Marion, P. Schanda, The Journal of Physical Chemistry B 120 (2016) 8905–8913.
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V. Kurauskas, E. Weber, A. Hessel, I. Ayala, D. Marion, P. Schanda, The Journal of Physical Chemistry B 120 (2016) 8905–8913.
2016 | Journal Article | IST-REx-ID: 8452
A ring-shaped conduit connects the mother cell and forespore during sporulation in Bacillus subtilis
C.D.A. Rodrigues, X. Henry, E. Neumann, V. Kurauskas, L. Bellard, Y. Fichou, P. Schanda, G. Schoehn, D.Z. Rudner, C. Morlot, Proceedings of the National Academy of Sciences 113 (2016) 11585–11590.
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C.D.A. Rodrigues, X. Henry, E. Neumann, V. Kurauskas, L. Bellard, Y. Fichou, P. Schanda, G. Schoehn, D.Z. Rudner, C. Morlot, Proceedings of the National Academy of Sciences 113 (2016) 11585–11590.
2016 | Journal Article | IST-REx-ID: 8454
Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules
P. Schanda, M. Ernst, Progress in Nuclear Magnetic Resonance Spectroscopy 96 (2016) 1–46.
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P. Schanda, M. Ernst, Progress in Nuclear Magnetic Resonance Spectroscopy 96 (2016) 1–46.
2016 | Journal Article | IST-REx-ID: 8493
A second order expansion of the separatrix map for trigonometric perturbations of a priori unstable systems
M. Guardia, V. Kaloshin, J. Zhang, Communications in Mathematical Physics 348 (2016) 321–361.
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M. Guardia, V. Kaloshin, J. Zhang, Communications in Mathematical Physics 348 (2016) 321–361.
2016 | Journal Article | IST-REx-ID: 849
Saturation of recognition elements blocks evolution of new tRNA identities
A. Saint Léger, C. Bello, P. Dans, A. Torres, E. Novoa, N. Camacho, M. Orozco, F. Kondrashov, L. Ribas De Pouplana, Science Advances 2 (2016) e1501860–e1501860.
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A. Saint Léger, C. Bello, P. Dans, A. Torres, E. Novoa, N. Camacho, M. Orozco, F. Kondrashov, L. Ribas De Pouplana, Science Advances 2 (2016) e1501860–e1501860.
2016 | Journal Article | IST-REx-ID: 8494
Arnold diffusion in arbitrary degrees of freedom and normally hyperbolic invariant cylinders
P. Bernard, V. Kaloshin, K. Zhang, Acta Mathematica 217 (2016) 1–79.
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P. Bernard, V. Kaloshin, K. Zhang, Acta Mathematica 217 (2016) 1–79.
2016 | Journal Article | IST-REx-ID: 853
Metagenomic analyses of the late Pleistocene permafrost - Additional tools for reconstruction of environmental conditions
E. Rivkina, L. Petrovskaya, T. Vishnivetskaya, K. Krivushin, L. Shmakova, M. Tutukina, A. Meyers, F. Kondrashov, Biogeosciences 13 (2016) 2207–2219.
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E. Rivkina, L. Petrovskaya, T. Vishnivetskaya, K. Krivushin, L. Shmakova, M. Tutukina, A. Meyers, F. Kondrashov, Biogeosciences 13 (2016) 2207–2219.
2016 | Journal Article | IST-REx-ID: 9019 |
Targeting protein–protein interactions, a wide open field for drug design
M.M. Bakail, F. Ochsenbein, Comptes Rendus Chimie 19 (2016) 19–27.
[Published Version]
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M.M. Bakail, F. Ochsenbein, Comptes Rendus Chimie 19 (2016) 19–27.
2016 | Journal Article | IST-REx-ID: 9051 |
Dynamic self-assembly of microscale rotors and swimmers
M.S. Davies Wykes, J.A. Palacci, T. Adachi, L. Ristroph, X. Zhong, M.D. Ward, J. Zhang, M.J. Shelley, Soft Matter 12 (2016) 4584–4589.
[Preprint]
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| PubMed | Europe PMC
| arXiv
M.S. Davies Wykes, J.A. Palacci, T. Adachi, L. Ristroph, X. Zhong, M.D. Ward, J. Zhang, M.J. Shelley, Soft Matter 12 (2016) 4584–4589.
2016 | Journal Article | IST-REx-ID: 9052 |
Trochoidal trajectories of self-propelled Janus particles in a diverging laser beam
H. Moyses, J.A. Palacci, S. Sacanna, D.G. Grier, Soft Matter 12 (2016) 6357–6364.
[Preprint]
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H. Moyses, J.A. Palacci, S. Sacanna, D.G. Grier, Soft Matter 12 (2016) 6357–6364.
2016 | Journal Article | IST-REx-ID: 931
Interplay of migratory and division forces as a generic mechanism for stem cell patterns
E.B. Hannezo, A. Coucke, J. Joanny, Physical Review E Statistical Nonlinear and Soft Matter Physics 93 (2016).
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E.B. Hannezo, A. Coucke, J. Joanny, Physical Review E Statistical Nonlinear and Soft Matter Physics 93 (2016).
2016 | Journal Article | IST-REx-ID: 932
Emergence of an Apical Epithelial Cell Surface In Vivo
J. Sedzinski, E.B. Hannezo, F. Tu, M. Biro, J. Wallingford, Developmental Cell 36 (2016) 24–35.
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J. Sedzinski, E.B. Hannezo, F. Tu, M. Biro, J. Wallingford, Developmental Cell 36 (2016) 24–35.
2016 | Journal Article | IST-REx-ID: 9456 |
Mechanism for DNA transposons to generate introns on genomic scales
J.T. Huff, D. Zilberman, S.W. Roy, Nature 538 (2016) 533–536.
[Submitted Version]
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J.T. Huff, D. Zilberman, S.W. Roy, Nature 538 (2016) 533–536.
2016 | Conference Paper | IST-REx-ID: 948
Neurons equipped with intrinsic plasticity learn stimulus intensity statistics
T. Monk, C. Savin, J. Lücke, in:, Neural Information Processing Systems, 2016, pp. 4285–4293.
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T. Monk, C. Savin, J. Lücke, in:, Neural Information Processing Systems, 2016, pp. 4285–4293.
2016 | Journal Article | IST-REx-ID: 9681
Nuclear quantum effects in water at the triple point: Using theory as a link between experiments
B. Cheng, J. Behler, M. Ceriotti, The Journal of Physical Chemistry Letters 7 (2016) 2210–2215.
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| PubMed | Europe PMC
B. Cheng, J. Behler, M. Ceriotti, The Journal of Physical Chemistry Letters 7 (2016) 2210–2215.
2016 | Journal Article | IST-REx-ID: 1262 |
Elevated virulence of an emerging viral genotype as a driver of honeybee loss
D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).
[Published Version]
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D. Mcmahon, M. Natsopoulou, V. Doublet, M. Fürst, S. Weging, M. Brown, A. Gogol Döring, R. Paxton, Proceedings of the Royal Society of London Series B Biological Sciences 283 (2016).