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11357 Publications

2025 | Published | Journal Article | IST-REx-ID: 20628 |

Numerical homogenization of sand from grain-level simulations
Y.-L. Chen, M. Ly, C. Wojtan, ACM Transactions on Graphics 44 (2025).

[Published Version] View | Files available | DOI

Antagonistic SnRK2 and PID kinases' action on auxin transport-mediated root gravitropism
F. Sheng, Y. Gao, Y. Wang, Y. Li, J. Zhang, Z. Zhang, X. Qin, S. Zhang, W. Song, J. Li, Y. Guo, J. Friml, Z. Gong, Q. Zhang, J. Zhang, Proceedings of the National Academy of Sciences 122 (2025) e2512274122.

2025 | Epub ahead of print | Journal Article | IST-REx-ID: 20636

TMK-PIN1 drives a short self-organizing circuit for auxin export and signaling in Arabidopsis
Huang R, Wang J, Chang M, Tang W, Yu Y, Zhang Y, Peng Y, Wang Y, Guo Y, Lu T, Cao Y, Zhou Y, Zhang Q, Huang Y, Wu A, Ren L, Gallei MC, Dong J, Chen H, He J, Wen M, Friml J, Sun L, Xiong Y, Yang Z, Xu T. 2025. TMK-PIN1 drives a short self-organizing circuit for auxin export and signaling in Arabidopsis. Developmental Cell., S1534-5807(25)00569–6.

View | DOI | PubMed | Europe PMC

2025 | Research Data | IST-REx-ID: 20641 |

Data for "Aromatic Ring Flips Reveal Reshaping of Protein Dynamics in Crystals and Complexes"
L.M. Becker, P. Schanda, (2025).

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Finding periodic orbits in projected quantum many-body dynamics
E. Petrova, M. Ljubotina, G. Yalniz, M. Serbyn, PRX Quantum 6 (2025).

[Published Version] View | Files available | DOI | WoS | arXiv

2025 | Published | Conference Paper | IST-REx-ID: 20648 |

PolyQEnt: A polynomial quantified entailment solver
K. Chatterjee, A.K. Goharshady, E. Goharshady, M. Karrabi, M. Saadat, M. Seeliger, D. Zikelic, in:, 23rd International Symposium on Automated Technology for Verification and Analysis, Springer Nature, 2025, pp. 411–424.

[Preprint] View | DOI | Download Preprint (ext.) | arXiv

Escape fractions from unattenuated Lyα emitters around luminous z > 6 quasars
M. Yue, A.C. Eilers, J.J. Matthee, R.P. Naidu, R. Bordoloi, F.B. Davies, J.F. Hennawi, D. Kashino, R. Mackenzie, R.A. Simcoe, The Astrophysical Journal Letters 993 (2025).

[Published Version] View | Files available | DOI | WoS | arXiv

2025 | Published | Journal Article | IST-REx-ID: 20651 |

What determines the maximum mass of AGN-assisted black hole mergers?
L.Q. Xue, H. Tagawa, Z. Haiman, I. Bartos, Physical Review D 112 (2025).

[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv

A century of theories of balancing selection
F. Ruzicka, M.K. Zwoinska, D. Goedert, H. Kokko, X. Li Richter, I.R. Moodie, S. Nilén, C. Olito, E.I. Svensson, P. Czuppon, T. Connallon, Biological Reviews (2025).

ABP1/ABL3-TMK1 cell-surface auxin signaling targets PIN2-mediated auxin fluxes for root gravitropism
Rodriguez Solovey L, Fiedler L, Zou M, Giannini C, Monzer A, Vladimirtsev D, Randuch M, Yu Y, Gelová Z, Verstraeten I, Hajny J, Chen M, Tan S, Hörmayer L, Li L, Marques-Bueno MM, Quddoos Z, Molnar G, Kulich I, Jaillais Y, Friml J. 2025. ABP1/ABL3-TMK1 cell-surface auxin signaling targets PIN2-mediated auxin fluxes for root gravitropism. Cell. 188(22), 6138–6150.e17.

Maximum Betti numbers of Čech complexes
H. Edelsbrunner, J. Pach, Discrete & Computational Geometry (2025).

2025 | Published | Conference Paper | IST-REx-ID: 20658 |

The mid-sphere cousin of the medial axis transform
H. Edelsbrunner, E.R. Stephenson, M.H. Thoresen, in:, 4th International Joint Conference on Discrete Geometry and Mathematical Morphology, Springer Nature, 2025, pp. 133–147.

[Preprint] View | DOI | Download Preprint (ext.) | arXiv

Developmental regulation of GABAB receptors and downstream molecules in the mouse brain
C. Aguado, R. Alfaro-Ruiz, M.L. Martínez-Poyato, A.E. Moreno-Martínez, S. García-Madrona, A. Roldán-Sastre, P. Alonso-Gómez, M. Fernández, R. Puertas-Avendaño, R. Shigemoto, K.A. Martemyanov, R. Luján, Histology and Histopathology 40 (2025) 1967–1984.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

The JWST Emission Line Survey (JELS): The sizes and merger fraction of star-forming galaxies during the Epoch of Reionization
Stephenson HMO, Stott JP, Pirie CA, Duncan KJ, Mcleod DJ, Best PN, Brinch M, Clausen M, Cochrane RK, Dunlop JS, Flury SR, Geach JE, Hale CL, Ibar E, Li Z, Matthee JJ, Mclure RJ, Ossa-Fuentes L, Patrick AL, Sobral D, Swinbank AM. 2025. The JWST Emission Line Survey (JELS): The sizes and merger fraction of star-forming galaxies during the Epoch of Reionization. Monthly Notices of the Royal Astronomical Society. 544(2), 1412–1431.

[Published Version] View | Files available | DOI | WoS

Quantifying spectroscopic flux variations between JWST NIRISS and NIRSpec: Slit losses in emission line measurements of z ∼ 1-3 galaxies
N. Dalmasso, P.J. Watson, T. Treu, M. Trenti, B. Vulcani, T. Nanayakkara, M. Bradač, T. Jones, K. Boyett, X. Wang, S. Mascia, L. Pentericci, Monthly Notices of the Royal Astronomical Society 544 (2025) 1915–1925.

[Published Version] View | Files available | DOI | WoS | arXiv

Generating synthetic task-based brain fingerprints for population neuroscience using deep learning
Serin E, Ritter K, Schumann G, Banaschewski T, Marquand A, Walter H, Ogoh G, Stahl BC, Brandlistuen R, Schikowski T, Young AH, Xinyang Y, Zhang Z, Agunbiade K, Chen D, Desrivières S, Clinton N, Thompson P, Köhler V, Schwalber A, Calhoun VD, Chang X, Zhang Y, Li Y, Dai Y, Yuan J, Xia Y, Jia T, Renner P, Hese S, Spanlang B, Pearmund C, Athanasiadis AP, Petkoski S, Jirsa V, Schmitt K, Wilbertz JH, Patraskaki M, Sommer P, Heilmann-Heimbach S, Mathey CM, Miller AJ, Claus I, Nöthen MM, Hoffmann P, Forstner AJ, Pastor A, Gallego J, Itatani R, Eiroa-Orosa F, Feixas G, Slater M, Novarino G, Böttger SJ, Tschorn M, Rapp M, Ask H, Kjelkenes R, Fernandez S, Van Der Meer D, Westlye LT, Andreassen OA, Aden R, Seefried B, Nees F, Neidhart M, Stringaris A, Schwarz E, Holz N, Tost H, Meyer-Lindenberg A, Christmann N, Janson K, Schepanski K, Schütz T, Taron UH, Eils R, Roy JC, Lett TA, Kebir H, Polemiti E, Hitchen E, Jentsch M, Serin E, Bernas A, Vaidya N, Twardziok S, Ralser M, Heinz A, Schumann G. 2025. Generating synthetic task-based brain fingerprints for population neuroscience using deep learning. Communications Biology. 8, 1572.

Angle dependence as a unifying feature of root graviresponse modules
S. Roychoudhry, K. Sageman-Furnas, H.J. Taylor, I. Showpnil, C. Wolverton, J. Friml, M.D. Bianco, S. Kepinski, Proceedings of the National Academy of Sciences 122 (2025) e2506400122.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

Quantifying the carbon footprint of conference travel: The case of NMR meetings
L. Kapoor, N. Ruzickova, P. Zivadinovic, V. Leitner, M.A. Sisak, C.N. Mweka, J.A. Dobbelaere, G. Katsaros, P. Schanda, Magnetic Resonance 6 (2025) 243–256.

[Published Version] View | Files available | DOI

Competition of light-and phonon-dressing in microwave-dressed Bose polarons
G. Koutentakis, S.I. Mistakidis, F. Grusdt, H.R. Sadeghpour, P. Schmelcher, Scipost Physics 19 (2025).

[Published Version] View | Files available | DOI | WoS | arXiv

2025 | Published | Conference Paper | IST-REx-ID: 20667

Mean estimation in high-dimensional binary timeinhomogeneous Markov Gaussian mixture models
A. El Latif Kadry, Y. Zhang, N. Weinberger, in:, 2025 IEEE International Symposium on Information Theory Proceedings, IEEE, 2025.

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