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10590 Publications
2013 | Published | Conference Paper | IST-REx-ID: 2272 |

Inference algorithms for pattern-based CRFs on sequence data
R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, ML Research Press, 2013, pp. 145–153.
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R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, ML Research Press, 2013, pp. 145–153.
2013 | Draft | Report | IST-REx-ID: 2273 |

Reweighted message passing revisited
Kolmogorov, Vladimir, Reweighted message passing revisited. 2013
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Kolmogorov, Vladimir, Reweighted message passing revisited. 2013
2013 | Published | Conference Paper | IST-REx-ID: 2244 |

Untangling two systems of noncrossing curves
J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, 8242 (2013) 472–483.
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J. Matoušek, E. Sedgwick, M. Tancer, U. Wagner, 8242 (2013) 472–483.
2013 | Published | Journal Article | IST-REx-ID: 827 |

Cytokinin cross talking during biotic and abiotic stress responses
J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).
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J. O’Brien, E. Benková, Frontiers in Plant Science 4 (2013).
2013 | Published | Journal Article | IST-REx-ID: 2844
An auxin transport mechanism restricts positive orthogravitropism in lateral roots
M. Rosquete, D. von Wangenheim, P. Marhavý, E. Barbez, E. Stelzer, E. Benková, A. Maizel, J. Kleine Vehn, Current Biology 23 (2013) 817–822.
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M. Rosquete, D. von Wangenheim, P. Marhavý, E. Barbez, E. Stelzer, E. Benková, A. Maizel, J. Kleine Vehn, Current Biology 23 (2013) 817–822.
2013 | Published | Journal Article | IST-REx-ID: 2880 |

Auxin reflux between the endodermis and pericycle promotes lateral root initiation
P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
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P. Marhavý, M. Vanstraelen, B. De Rybel, D. Zhaojun, M. Bennett, T. Beeckman, E. Benková, EMBO Journal 32 (2013) 149–158.
2013 | Published | Journal Article | IST-REx-ID: 828 |

Systems approaches to study root architecture dynamics
C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).
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C. Cuesta, K.T. Wabnik, E. Benková, Frontiers in Plant Science 4 (2013).
2013 | Published | Conference Paper | IST-REx-ID: 2294 |

Drosophila Embryo Stage Annotation using Label Propagation
T. Kazmar, E. Kvon, A. Stark, C. Lampert, in:, IEEE, 2013.
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T. Kazmar, E. Kvon, A. Stark, C. Lampert, in:, IEEE, 2013.
2013 | Published | Conference Paper | IST-REx-ID: 2293 |

Learning to rank using privileged information
V. Sharmanska, N. Quadrianto, C. Lampert, in:, IEEE, 2013, pp. 825–832.
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V. Sharmanska, N. Quadrianto, C. Lampert, in:, IEEE, 2013, pp. 825–832.
2013 | Published | Journal Article | IST-REx-ID: 2909 |

Modelling evolution in a spatial continuum
Barton, Nicholas H, Modelling evolution in a spatial continuum. Journal of Statistical Mechanics Theory and Experiment 2013 (1). 2013
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Barton, Nicholas H, Modelling evolution in a spatial continuum. Journal of Statistical Mechanics Theory and Experiment 2013 (1). 2013
2013 | Published | Journal Article | IST-REx-ID: 2473 |

Genetic hitch-hiking in spatially extended populations
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
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N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 75–89.
2013 | Published | Conference Paper | IST-REx-ID: 2718 |

Can quantitative and population genetics help us understand evolutionary computation?
N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
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N.H. Barton, T. Paixao, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 1573–1580.
2013 | Published | Journal Article | IST-REx-ID: 2842 |

Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks
N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
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N.H. Barton, A. Etheridge, J. Kelleher, A. Véber, Theoretical Population Biology 87 (2013) 105–119.
2013 | Published | Journal Article | IST-REx-ID: 2910 |

Coalescent simulation in continuous space
J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
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J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.
2013 | Published | Journal Article | IST-REx-ID: 2720 |

Accumulation of spontaneous mutations in the ciliate Tetrahymena thermophila
H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
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H. Long, T. Paixao, R. Azevedo, R. Zufall, Genetics 195 (2013) 527–540.
2013 | Published | Conference Paper | IST-REx-ID: 2719
A variance decomposition approach to the analysis of genetic algorithms
T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.
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T. Paixao, N.H. Barton, in:, Proceedings of the 15th Annual Conference on Genetic and Evolutionary Computation, ACM, 2013, pp. 845–852.
2013 | Published | Journal Article | IST-REx-ID: 2860 |

Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning
D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
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D. Dupret, J. O’Neill, J.L. Csicsvari, Neuron 78 (2013) 166–180.
2013 | Published | Journal Article | IST-REx-ID: 2857 |

Optical control of ligand-gated ion channels
S. Szobota, C. Mckenzie, H.L. Janovjak, Methods in Molecular Biology 998 (2013) 417–435.
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S. Szobota, C. Mckenzie, H.L. Janovjak, Methods in Molecular Biology 998 (2013) 417–435.
2013 | Published | Journal Article | IST-REx-ID: 2472 |

Role of the Arabidopsis PIN6 auxin transporter in auxin homeostasis and auxin-mediated development
C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
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C. Cazzonelli, M. Vanstraelen, S. Simon, K. Yin, A. Carron Arthur, N. Nisar, G. Tarle, A. Cuttriss, I. Searle, E. Benková, U. Mathesius, J. Masle, J. Friml, B. Pogson, PLoS One 8 (2013).
2013 | Published | Journal Article | IST-REx-ID: 2832 |

Cell polarity and patterning by PIN trafficking through early endosomal compartments in arabidopsis thaliana
H. Tanaka, S. Kitakura, H. Rakusová, T. Uemura, M. Feraru, R. De Rycke, S. Robert, T. Kakimoto, J. Friml, PLoS Genetics 9 (2013).
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H. Tanaka, S. Kitakura, H. Rakusová, T. Uemura, M. Feraru, R. De Rycke, S. Robert, T. Kakimoto, J. Friml, PLoS Genetics 9 (2013).