Christoph M Sommer

20 Publications

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[20]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA
Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas, N., Vorlaufer, J., … Danzl, J. G. (2025). Light-microscopy-based connectomic reconstruction of mammalian brain tissue. Nature. Springer Nature. https://doi.org/10.1038/s41586-025-08985-1
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (2025). Super-resolution expansion microscopy in plant roots. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koaf006
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska, J. M., Lyudchik, J., Velicky, P., Korinkova, H., Watson, J., Cenameri, A., … Danzl, J. G. (2024). Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. Springer Nature. https://doi.org/10.1038/s41587-023-01911-8
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, D., Toma, F. A., Harrington, Z. P., Sommer, C. M., Hauschild, R., Trevisan, A. J., … Sweeney, L. B. (n.d.). Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv. https://doi.org/10.1101/2024.09.20.614050
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas, N., Vorlaufer, J., … Danzl, J. G. (n.d.). Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv. https://doi.org/10.1101/2024.03.01.582884
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (n.d.). Super-resolution expansion microscopy in plant roots. bioRxiv. https://doi.org/10.1101/2024.02.21.581330
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky, P., Miguel Villalba, E., Michalska, J. M., Lyudchik, J., Wei, D., Lin, Z., … Danzl, J. G. (2023). Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. Springer Nature. https://doi.org/10.1038/s41592-023-01936-6
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev, K., Shamipour, S., Nunes Pinheiro, D. C., Preusser, F., Steccari, I., Sommer, C. M., … Heisenberg, C.-P. J. (2023). A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2023.02.016
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson, A. J., Kaufmann, W., Sommer, C. M., Costanzo, T., Dahhan, D. A., Bednarek, S. Y., & Friml, J. (2022). Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. Elsevier. https://doi.org/10.1016/j.molp.2022.09.003
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, A. H., Pauler, F., Riedl, M., Streicher, C., Heger, A.-M., Laukoter, S., … Hippenmeyer, S. (2022). Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. Oxford University Press. https://doi.org/10.1093/oons/kvac009
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler, P., Baranova, N. S., Dos Santos Caldas, P. R., Sommer, C. M., Lopez Pelegrin, M. D., Michalik, D., & Loose, M. (2022). In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-022-30301-y
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa, C. E., Cheroni, C., Dotter, C., López-Tóbon, A., Oliveira, B., Sacco, R., … Novarino, G. (2022). CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2022.110615
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky, P., Miguel Villalba, E., Michalska, J. M., Wei, D., Lin, Z., Watson, J., … Danzl, J. G. (n.d.). Saturated reconstruction of living brain tissue. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.03.16.484431
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska, J. M., Lyudchik, J., Velicky, P., Korinkova, H., Watson, J., Cenameri, A., … Danzl, J. G. (n.d.). Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.08.17.504272
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj, S., Bagley, J. A., Sommer, C. M., Vertesy, A., Nagumo Wong, S., Krenn, V., … Knoblich, J. A. (2021). Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. Embo Press. https://doi.org/10.15252/embj.2021108714
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell, J., Schwarz, L. A., Basilico, B., Tasciyan, S., Dimchev, G. A., Nicolas, A., … Novarino, G. (2021). Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-021-23123-x
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, P. R., Radler, P., Sommer, C. M., & Loose, M. (2020). Computational analysis of filament polymerization dynamics in cytoskeletal networks. In P. Tran (Ed.), Methods in Cell Biology (Vol. 158, pp. 145–161). Elsevier. https://doi.org/10.1016/bs.mcb.2020.01.006
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell, J., Schwarz, L. A., Basilico, B., Tasciyan, S., Nicolas, A., Sommer, C. M., … Novarino, G. (n.d.). Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.01.10.902064
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt, S. M., Sommer, C. M., Rizzoli, S. O., & Danzl, J. G. (2019). A practical guide to optimization in X10 expansion microscopy. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/s41596-018-0117-3
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer, C. M., Straehle, C., Köthe, U., & Hamprecht, F. A. (2011). Ilastik: Interactive learning and segmentation toolkit. In 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. Chicago, Illinois, USA: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/isbi.2011.5872394
[Preprint] View | DOI | Download Preprint (ext.)
 
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1 Grants


Napari-correct-drift

2022-11-01 – 2023-11-30
Chan Zuckerberg Initiative

20 Publications

Mark all

[20]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA
Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas, N., Vorlaufer, J., … Danzl, J. G. (2025). Light-microscopy-based connectomic reconstruction of mammalian brain tissue. Nature. Springer Nature. https://doi.org/10.1038/s41586-025-08985-1
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (2025). Super-resolution expansion microscopy in plant roots. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koaf006
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska, J. M., Lyudchik, J., Velicky, P., Korinkova, H., Watson, J., Cenameri, A., … Danzl, J. G. (2024). Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. Springer Nature. https://doi.org/10.1038/s41587-023-01911-8
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, D., Toma, F. A., Harrington, Z. P., Sommer, C. M., Hauschild, R., Trevisan, A. J., … Sweeney, L. B. (n.d.). Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv. https://doi.org/10.1101/2024.09.20.614050
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli, M., Lyudchik, J., Januszewski, M., Vistunou, V., Agudelo Duenas, N., Vorlaufer, J., … Danzl, J. G. (n.d.). Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv. https://doi.org/10.1101/2024.03.01.582884
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei, M. C., Truckenbrodt, S. M., Kreuzinger, C., Inumella, S., Vistunou, V., Sommer, C. M., … Danzl, J. G. (n.d.). Super-resolution expansion microscopy in plant roots. bioRxiv. https://doi.org/10.1101/2024.02.21.581330
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky, P., Miguel Villalba, E., Michalska, J. M., Lyudchik, J., Wei, D., Lin, Z., … Danzl, J. G. (2023). Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. Springer Nature. https://doi.org/10.1038/s41592-023-01936-6
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev, K., Shamipour, S., Nunes Pinheiro, D. C., Preusser, F., Steccari, I., Sommer, C. M., … Heisenberg, C.-P. J. (2023). A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2023.02.016
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson, A. J., Kaufmann, W., Sommer, C. M., Costanzo, T., Dahhan, D. A., Bednarek, S. Y., & Friml, J. (2022). Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. Elsevier. https://doi.org/10.1016/j.molp.2022.09.003
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, A. H., Pauler, F., Riedl, M., Streicher, C., Heger, A.-M., Laukoter, S., … Hippenmeyer, S. (2022). Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. Oxford University Press. https://doi.org/10.1093/oons/kvac009
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler, P., Baranova, N. S., Dos Santos Caldas, P. R., Sommer, C. M., Lopez Pelegrin, M. D., Michalik, D., & Loose, M. (2022). In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-022-30301-y
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa, C. E., Cheroni, C., Dotter, C., López-Tóbon, A., Oliveira, B., Sacco, R., … Novarino, G. (2022). CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2022.110615
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky, P., Miguel Villalba, E., Michalska, J. M., Wei, D., Lin, Z., Watson, J., … Danzl, J. G. (n.d.). Saturated reconstruction of living brain tissue. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.03.16.484431
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska, J. M., Lyudchik, J., Velicky, P., Korinkova, H., Watson, J., Cenameri, A., … Danzl, J. G. (n.d.). Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2022.08.17.504272
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj, S., Bagley, J. A., Sommer, C. M., Vertesy, A., Nagumo Wong, S., Krenn, V., … Knoblich, J. A. (2021). Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. Embo Press. https://doi.org/10.15252/embj.2021108714
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell, J., Schwarz, L. A., Basilico, B., Tasciyan, S., Dimchev, G. A., Nicolas, A., … Novarino, G. (2021). Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-021-23123-x
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, P. R., Radler, P., Sommer, C. M., & Loose, M. (2020). Computational analysis of filament polymerization dynamics in cytoskeletal networks. In P. Tran (Ed.), Methods in Cell Biology (Vol. 158, pp. 145–161). Elsevier. https://doi.org/10.1016/bs.mcb.2020.01.006
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell, J., Schwarz, L. A., Basilico, B., Tasciyan, S., Nicolas, A., Sommer, C. M., … Novarino, G. (n.d.). Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.01.10.902064
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt, S. M., Sommer, C. M., Rizzoli, S. O., & Danzl, J. G. (2019). A practical guide to optimization in X10 expansion microscopy. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/s41596-018-0117-3
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer, C. M., Straehle, C., Köthe, U., & Hamprecht, F. A. (2011). Ilastik: Interactive learning and segmentation toolkit. In 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. Chicago, Illinois, USA: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/isbi.2011.5872394
[Preprint] View | DOI | Download Preprint (ext.)
 
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