Christoph M Sommer

20 Publications

Mark all

[20]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA
Tavakoli, Mojtaba, et al. “Light-Microscopy-Based Connectomic Reconstruction of Mammalian Brain Tissue.” Nature, vol. 642, Springer Nature, 2025, pp. 398–410, doi:10.1038/s41586-025-08985-1.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant Roots.” The Plant Cell, vol. 37, no. 4, koaf006, Oxford University Press, 2025, doi:10.1093/plcell/koaf006.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska, Julia M., et al. “Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.” Nature Biotechnology, vol. 42, Springer Nature, 2024, pp. 1051–64, doi:10.1038/s41587-023-01911-8.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, David, et al. “Spinal Neuron Diversity Scales Exponentially with Swim-to-Limb Transformation during Frog Metamorphosis.” BioRxiv, doi:10.1101/2024.09.20.614050.
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli, Mojtaba, et al. “Light-Microscopy Based Dense Connectomic Reconstruction of Mammalian Brain Tissue.” BioRxiv, doi:10.1101/2024.03.01.582884.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant Roots.” BioRxiv, doi:10.1101/2024.02.21.581330.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky, Philipp, et al. “Dense 4D Nanoscale Reconstruction of Living Brain Tissue.” Nature Methods, vol. 20, Springer Nature, 2023, pp. 1256–65, doi:10.1038/s41592-023-01936-6.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev, Karla, et al. “A Hydraulic Feedback Loop between Mesendoderm Cell Migration and Interstitial Fluid Relocalization Promotes Embryonic Axis Formation in Zebrafish.” Developmental Cell, vol. 58, no. 7, Elsevier, 2023, p. 582–596.e7, doi:10.1016/j.devcel.2023.02.016.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson, Alexander J., et al. “Three-Dimensional Visualization of Planta Clathrin-Coated Vesicles at Ultrastructural Resolution.” Molecular Plant, vol. 15, no. 10, Elsevier, 2022, pp. 1533–42, doi:10.1016/j.molp.2022.09.003.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, Andi H., et al. “Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.” Oxford Open Neuroscience, vol. 1, no. 1, kvac009, Oxford University Press, 2022, doi:10.1093/oons/kvac009.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler, Philipp, et al. “In Vitro Reconstitution of Escherichia Coli Divisome Activation.” Nature Communications, vol. 13, 2635, Springer Nature, 2022, doi:10.1038/s41467-022-30301-y.
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa, Carlo Emanuele, et al. “CHD8 Haploinsufficiency Links Autism to Transient Alterations in Excitatory and Inhibitory Trajectories.” Cell Reports, vol. 39, no. 1, 110615, Elsevier, 2022, doi:10.1016/j.celrep.2022.110615.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky, Philipp, et al. “Saturated Reconstruction of Living Brain Tissue.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2022.03.16.484431.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska, Julia M., et al. “Uncovering Brain Tissue Architecture across Scales with Super-Resolution Light Microscopy.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2022.08.17.504272.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj, Sunanjay, et al. “Neurotransmitter Signaling Regulates Distinct Phases of Multimodal Human Interneuron Migration.” EMBO Journal, vol. 40, no. 23, e108714, Embo Press, 2021, doi:10.15252/embj.2021108714.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell, Jasmin, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” Nature Communications, vol. 12, no. 1, 3058, Springer Nature, 2021, doi:10.1038/s41467-021-23123-x.
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, Paulo R., et al. “Computational Analysis of Filament Polymerization Dynamics in Cytoskeletal Networks.” Methods in Cell Biology, edited by Phong Tran, vol. 158, Elsevier, 2020, pp. 145–61, doi:10.1016/bs.mcb.2020.01.006.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell, Jasmin, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2020.01.10.902064 .
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt, Sven M., et al. “A Practical Guide to Optimization in X10 Expansion Microscopy.” Nature Protocols, vol. 14, no. 3, Nature Publishing Group, 2019, pp. 832–863, doi:10.1038/s41596-018-0117-3.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer, Christoph M., et al. “Ilastik: Interactive Learning and Segmentation Toolkit.” 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011, doi:10.1109/isbi.2011.5872394.
[Preprint] View | DOI | Download Preprint (ext.)
 
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1 Grants


Napari-correct-drift

2022-11-01 – 2023-11-30
Chan Zuckerberg Initiative

20 Publications

Mark all

[20]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA
Tavakoli, Mojtaba, et al. “Light-Microscopy-Based Connectomic Reconstruction of Mammalian Brain Tissue.” Nature, vol. 642, Springer Nature, 2025, pp. 398–410, doi:10.1038/s41586-025-08985-1.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant Roots.” The Plant Cell, vol. 37, no. 4, koaf006, Oxford University Press, 2025, doi:10.1093/plcell/koaf006.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska, Julia M., et al. “Imaging Brain Tissue Architecture across Millimeter to Nanometer Scales.” Nature Biotechnology, vol. 42, Springer Nature, 2024, pp. 1051–64, doi:10.1038/s41587-023-01911-8.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic, David, et al. “Spinal Neuron Diversity Scales Exponentially with Swim-to-Limb Transformation during Frog Metamorphosis.” BioRxiv, doi:10.1101/2024.09.20.614050.
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli, Mojtaba, et al. “Light-Microscopy Based Dense Connectomic Reconstruction of Mammalian Brain Tissue.” BioRxiv, doi:10.1101/2024.03.01.582884.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei, Michelle C., et al. “Super-Resolution Expansion Microscopy in Plant Roots.” BioRxiv, doi:10.1101/2024.02.21.581330.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky, Philipp, et al. “Dense 4D Nanoscale Reconstruction of Living Brain Tissue.” Nature Methods, vol. 20, Springer Nature, 2023, pp. 1256–65, doi:10.1038/s41592-023-01936-6.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev, Karla, et al. “A Hydraulic Feedback Loop between Mesendoderm Cell Migration and Interstitial Fluid Relocalization Promotes Embryonic Axis Formation in Zebrafish.” Developmental Cell, vol. 58, no. 7, Elsevier, 2023, p. 582–596.e7, doi:10.1016/j.devcel.2023.02.016.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson, Alexander J., et al. “Three-Dimensional Visualization of Planta Clathrin-Coated Vesicles at Ultrastructural Resolution.” Molecular Plant, vol. 15, no. 10, Elsevier, 2022, pp. 1533–42, doi:10.1016/j.molp.2022.09.003.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen, Andi H., et al. “Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.” Oxford Open Neuroscience, vol. 1, no. 1, kvac009, Oxford University Press, 2022, doi:10.1093/oons/kvac009.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler, Philipp, et al. “In Vitro Reconstitution of Escherichia Coli Divisome Activation.” Nature Communications, vol. 13, 2635, Springer Nature, 2022, doi:10.1038/s41467-022-30301-y.
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa, Carlo Emanuele, et al. “CHD8 Haploinsufficiency Links Autism to Transient Alterations in Excitatory and Inhibitory Trajectories.” Cell Reports, vol. 39, no. 1, 110615, Elsevier, 2022, doi:10.1016/j.celrep.2022.110615.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky, Philipp, et al. “Saturated Reconstruction of Living Brain Tissue.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2022.03.16.484431.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska, Julia M., et al. “Uncovering Brain Tissue Architecture across Scales with Super-Resolution Light Microscopy.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2022.08.17.504272.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj, Sunanjay, et al. “Neurotransmitter Signaling Regulates Distinct Phases of Multimodal Human Interneuron Migration.” EMBO Journal, vol. 40, no. 23, e108714, Embo Press, 2021, doi:10.15252/embj.2021108714.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell, Jasmin, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” Nature Communications, vol. 12, no. 1, 3058, Springer Nature, 2021, doi:10.1038/s41467-021-23123-x.
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas, Paulo R., et al. “Computational Analysis of Filament Polymerization Dynamics in Cytoskeletal Networks.” Methods in Cell Biology, edited by Phong Tran, vol. 158, Elsevier, 2020, pp. 145–61, doi:10.1016/bs.mcb.2020.01.006.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell, Jasmin, et al. “Cul3 Regulates Cytoskeleton Protein Homeostasis and Cell Migration during a Critical Window of Brain Development.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2020.01.10.902064 .
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt, Sven M., et al. “A Practical Guide to Optimization in X10 Expansion Microscopy.” Nature Protocols, vol. 14, no. 3, Nature Publishing Group, 2019, pp. 832–863, doi:10.1038/s41596-018-0117-3.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer, Christoph M., et al. “Ilastik: Interactive Learning and Segmentation Toolkit.” 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Micro, Institute of Electrical and Electronics Engineers, 2011, doi:10.1109/isbi.2011.5872394.
[Preprint] View | DOI | Download Preprint (ext.)
 
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Citation Style: MLA

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