Christoph M Sommer

20 Publications

Mark all

[20]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA
Tavakoli M, Lyudchik J, Januszewski M, Vistunou V, Agudelo Duenas N, Vorlaufer J, Sommer CM, Kreuzinger C, Oliveira B, Cenameri A, Novarino G, Jain V, Danzl JG. 2025. Light-microscopy-based connectomic reconstruction of mammalian brain tissue. Nature. 642, 398–410.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM, Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková E, Friml J, Danzl JG. 2025. Super-resolution expansion microscopy in plant roots. The Plant Cell. 37(4), koaf006.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska JM, Lyudchik J, Velicky P, Korinkova H, Watson J, Cenameri A, Sommer CM, Amberg N, Venturino A, Roessler K, Czech T, Höftberger R, Siegert S, Novarino G, Jonas PM, Danzl JG. 2024. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 42, 1051–1064.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic D, Toma FA, Harrington ZP, Sommer CM, Hauschild R, Trevisan AJ, Chapman P, Julseth M, Brenner-Morton S, Gabitto MI, Dasen JS, Bikoff JB, Sweeney LB. Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv, 10.1101/2024.09.20.614050.
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli M, Lyudchik J, Januszewski M, Vistunou V, Agudelo Duenas N, Vorlaufer J, Sommer CM, Kreuzinger C, Oliveira B, Cenameri A, Novarino G, Jain V, Danzl JG. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv, 10.1101/2024.03.01.582884.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM, Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková E, Friml J, Danzl JG. Super-resolution expansion microscopy in plant roots. bioRxiv, 10.1101/2024.02.21.581330.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky P, Miguel Villalba E, Michalska JM, Lyudchik J, Wei D, Lin Z, Watson J, Troidl J, Beyer J, Ben Simon Y, Sommer CM, Jahr W, Cenameri A, Broichhagen J, Grant SGN, Jonas PM, Novarino G, Pfister H, Bickel B, Danzl JG. 2023. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 20, 1256–1265.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev K, Shamipour S, Nunes Pinheiro DC, Preusser F, Steccari I, Sommer CM, Naik S, Heisenberg C-PJ. 2023. A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. 58(7), 582–596.e7.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson AJ, Kaufmann W, Sommer CM, Costanzo T, Dahhan DA, Bednarek SY, Friml J. 2022. Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. 15(10), 1533–1542.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen AH, Pauler F, Riedl M, Streicher C, Heger A-M, Laukoter S, Sommer CM, Nicolas A, Hof B, Tsai LH, Rülicke T, Hippenmeyer S. 2022. Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. 1(1), kvac009.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler P, Baranova NS, Dos Santos Caldas PR, Sommer CM, Lopez Pelegrin MD, Michalik D, Loose M. 2022. In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. 13, 2635.
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa CE, Cheroni C, Dotter C, López-Tóbon A, Oliveira B, Sacco R, Yahya AÇ, Morandell J, Gabriele M, Tavakoli M, Lyudchik J, Sommer CM, Gabitto M, Danzl JG, Testa G, Novarino G. 2022. CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. 39(1), 110615.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky P, Miguel Villalba E, Michalska JM, Wei D, Lin Z, Watson J, Troidl J, Beyer J, Ben Simon Y, Sommer CM, Jahr W, Cenameri A, Broichhagen J, Grant SGN, Jonas PM, Novarino G, Pfister H, Bickel B, Danzl JG. Saturated reconstruction of living brain tissue. bioRxiv, 10.1101/2022.03.16.484431.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska JM, Lyudchik J, Velicky P, Korinkova H, Watson J, Cenameri A, Sommer CM, Venturino A, Roessler K, Czech T, Siegert S, Novarino G, Jonas PM, Danzl JG. Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv, 10.1101/2022.08.17.504272.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj S, Bagley JA, Sommer CM, Vertesy A, Nagumo Wong S, Krenn V, Lévi-Strauss J, Knoblich JA. 2021. Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. 40(23), e108714.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell J, Schwarz LA, Basilico B, Tasciyan S, Dimchev GA, Nicolas A, Sommer CM, Kreuzinger C, Dotter C, Knaus L, Dobler Z, Cacci E, Schur FK, Danzl JG, Novarino G. 2021. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. 12(1), 3058.
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas PR, Radler P, Sommer CM, Loose M. 2020.Computational analysis of filament polymerization dynamics in cytoskeletal networks. In: Methods in Cell Biology. Methods in Cell Biology, vol. 158, 145–161.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell J, Schwarz LA, Basilico B, Tasciyan S, Nicolas A, Sommer CM, Kreuzinger C, Knaus L, Dobler Z, Cacci E, Danzl JG, Novarino G. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv, 10.1101/2020.01.10.902064 .
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. 2019. A practical guide to optimization in X10 expansion microscopy. Nature Protocols. 14(3), 832–863.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging.
[Preprint] View | DOI | Download Preprint (ext.)
 
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Citation Style: ISTA Annual Report

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1 Grants


Napari-correct-drift

2022-11-01 – 2023-11-30
Chan Zuckerberg Initiative

20 Publications

Mark all

[20]
2025 | Published | Journal Article | IST-REx-ID: 19704 | OA
Tavakoli M, Lyudchik J, Januszewski M, Vistunou V, Agudelo Duenas N, Vorlaufer J, Sommer CM, Kreuzinger C, Oliveira B, Cenameri A, Novarino G, Jain V, Danzl JG. 2025. Light-microscopy-based connectomic reconstruction of mammalian brain tissue. Nature. 642, 398–410.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[19]
2025 | Published | Journal Article | IST-REx-ID: 19003 | OA | PlanS
Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM, Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková E, Friml J, Danzl JG. 2025. Super-resolution expansion microscopy in plant roots. The Plant Cell. 37(4), koaf006.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[18]
2024 | Published | Journal Article | IST-REx-ID: 14257 | OA
Michalska JM, Lyudchik J, Velicky P, Korinkova H, Watson J, Cenameri A, Sommer CM, Amberg N, Venturino A, Roessler K, Czech T, Höftberger R, Siegert S, Novarino G, Jonas PM, Danzl JG. 2024. Imaging brain tissue architecture across millimeter to nanometer scales. Nature Biotechnology. 42, 1051–1064.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[17]
2024 | Submitted | Preprint | IST-REx-ID: 19520 | OA
Vijatovic D, Toma FA, Harrington ZP, Sommer CM, Hauschild R, Trevisan AJ, Chapman P, Julseth M, Brenner-Morton S, Gabitto MI, Dasen JS, Bikoff JB, Sweeney LB. Spinal neuron diversity scales exponentially with swim-to-limb transformation during frog metamorphosis. bioRxiv, 10.1101/2024.09.20.614050.
[Preprint] View | DOI | Download Preprint (ext.)
 
[16]
2024 | Draft | Preprint | IST-REx-ID: 18677 | OA
Tavakoli M, Lyudchik J, Januszewski M, Vistunou V, Agudelo Duenas N, Vorlaufer J, Sommer CM, Kreuzinger C, Oliveira B, Cenameri A, Novarino G, Jain V, Danzl JG. Light-microscopy based dense connectomic reconstruction of mammalian brain tissue. bioRxiv, 10.1101/2024.03.01.582884.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[15]
2024 | Draft | Preprint | IST-REx-ID: 18689 | OA
Gallei MC, Truckenbrodt SM, Kreuzinger C, Inumella S, Vistunou V, Sommer CM, Tavakoli M, Agudelo Duenas N, Vorlaufer J, Jahr W, Randuch M, Johnson AJ, Benková E, Friml J, Danzl JG. Super-resolution expansion microscopy in plant roots. bioRxiv, 10.1101/2024.02.21.581330.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[14]
2023 | Published | Journal Article | IST-REx-ID: 13267 | OA
Velicky P, Miguel Villalba E, Michalska JM, Lyudchik J, Wei D, Lin Z, Watson J, Troidl J, Beyer J, Ben Simon Y, Sommer CM, Jahr W, Cenameri A, Broichhagen J, Grant SGN, Jonas PM, Novarino G, Pfister H, Bickel B, Danzl JG. 2023. Dense 4D nanoscale reconstruction of living brain tissue. Nature Methods. 20, 1256–1265.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[13]
2023 | Published | Journal Article | IST-REx-ID: 12830 | OA
Huljev K, Shamipour S, Nunes Pinheiro DC, Preusser F, Steccari I, Sommer CM, Naik S, Heisenberg C-PJ. 2023. A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish. Developmental Cell. 58(7), 582–596.e7.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[12]
2022 | Published | Journal Article | IST-REx-ID: 12239 | OA
Johnson AJ, Kaufmann W, Sommer CM, Costanzo T, Dahhan DA, Bednarek SY, Friml J. 2022. Three-dimensional visualization of planta clathrin-coated vesicles at ultrastructural resolution. Molecular Plant. 15(10), 1533–1542.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[11]
2022 | Published | Journal Article | IST-REx-ID: 10791 | OA
Hansen AH, Pauler F, Riedl M, Streicher C, Heger A-M, Laukoter S, Sommer CM, Nicolas A, Hof B, Tsai LH, Rülicke T, Hippenmeyer S. 2022. Tissue-wide effects override cell-intrinsic gene function in radial neuron migration. Oxford Open Neuroscience. 1(1), kvac009.
[Published Version] View | Files available | DOI | PubMed | Europe PMC
 
[10]
2022 | Published | Journal Article | IST-REx-ID: 11373 | OA
Radler P, Baranova NS, Dos Santos Caldas PR, Sommer CM, Lopez Pelegrin MD, Michalik D, Loose M. 2022. In vitro reconstitution of Escherichia coli divisome activation. Nature Communications. 13, 2635.
[Published Version] View | Files available | DOI | WoS
 
[9]
2022 | Published | Journal Article | IST-REx-ID: 11160 | OA
Villa CE, Cheroni C, Dotter C, López-Tóbon A, Oliveira B, Sacco R, Yahya AÇ, Morandell J, Gabriele M, Tavakoli M, Lyudchik J, Sommer CM, Gabitto M, Danzl JG, Testa G, Novarino G. 2022. CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories. Cell Reports. 39(1), 110615.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[8]
2022 | Draft | Preprint | IST-REx-ID: 11943 | OA
Velicky P, Miguel Villalba E, Michalska JM, Wei D, Lin Z, Watson J, Troidl J, Beyer J, Ben Simon Y, Sommer CM, Jahr W, Cenameri A, Broichhagen J, Grant SGN, Jonas PM, Novarino G, Pfister H, Bickel B, Danzl JG. Saturated reconstruction of living brain tissue. bioRxiv, 10.1101/2022.03.16.484431.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[7]
2022 | Draft | Preprint | IST-REx-ID: 11950 | OA
Michalska JM, Lyudchik J, Velicky P, Korinkova H, Watson J, Cenameri A, Sommer CM, Venturino A, Roessler K, Czech T, Siegert S, Novarino G, Jonas PM, Danzl JG. Uncovering brain tissue architecture across scales with super-resolution light microscopy. bioRxiv, 10.1101/2022.08.17.504272.
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 
[6]
2021 | Published | Journal Article | IST-REx-ID: 10179 | OA
Bajaj S, Bagley JA, Sommer CM, Vertesy A, Nagumo Wong S, Krenn V, Lévi-Strauss J, Knoblich JA. 2021. Neurotransmitter signaling regulates distinct phases of multimodal human interneuron migration. EMBO Journal. 40(23), e108714.
[Published Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[5]
2021 | Published | Journal Article | IST-REx-ID: 9429 | OA
Morandell J, Schwarz LA, Basilico B, Tasciyan S, Dimchev GA, Nicolas A, Sommer CM, Kreuzinger C, Dotter C, Knaus L, Dobler Z, Cacci E, Schur FK, Danzl JG, Novarino G. 2021. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. Nature Communications. 12(1), 3058.
[Published Version] View | Files available | DOI | WoS
 
[4]
2020 | Published | Book Chapter | IST-REx-ID: 7572 | OA
Dos Santos Caldas PR, Radler P, Sommer CM, Loose M. 2020.Computational analysis of filament polymerization dynamics in cytoskeletal networks. In: Methods in Cell Biology. Methods in Cell Biology, vol. 158, 145–161.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS
 
[3]
2020 | Draft | Preprint | IST-REx-ID: 7800 | OA
Morandell J, Schwarz LA, Basilico B, Tasciyan S, Nicolas A, Sommer CM, Kreuzinger C, Knaus L, Dobler Z, Cacci E, Danzl JG, Novarino G. Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development. bioRxiv, 10.1101/2020.01.10.902064 .
[Preprint] View | Files available | DOI
 
[2]
2019 | Published | Journal Article | IST-REx-ID: 6052 | OA
Truckenbrodt SM, Sommer CM, Rizzoli SO, Danzl JG. 2019. A practical guide to optimization in X10 expansion microscopy. Nature Protocols. 14(3), 832–863.
[Submitted Version] View | Files available | DOI | WoS | PubMed | Europe PMC
 
[1]
2011 | Published | Conference Paper | IST-REx-ID: 9943 | OA
Sommer CM, Straehle C, Köthe U, Hamprecht FA. 2011. Ilastik: Interactive learning and segmentation toolkit. 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Micro. ISBI: International Symposium on Biomedical Imaging.
[Preprint] View | DOI | Download Preprint (ext.)
 
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Citation Style: ISTA Annual Report

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