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133 Publications


2016 | Published | Conference Paper | IST-REx-ID: 1234 | OA
Daca P, Henzinger TA, Kretinsky J, Petrov T. 2016. Faster statistical model checking for unbounded temporal properties. TACAS: Tools and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 9636, 112–129.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | WoS | arXiv
 

2016 | Published | Journal Article | IST-REx-ID: 1170 | OA
Lang M, Stelling J. 2016. Modular parameter identification of biomolecular networks. SIAM Journal on Scientific Computing. 38(6), B988–B1008.
[Submitted Version] View | Files available | DOI | WoS
 

2016 | Published | Journal Article | IST-REx-ID: 1008
Gnügge R, Dharmarajan L, Lang M, Stelling J. 2016. An orthogonal permease–inducer–repressor feedback loop shows bistability. ACS Synthetic Biology. 5(10), 1098–1107.
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2015 | Published | Conference Paper | IST-REx-ID: 1835 | OA
Giacobbe M, Guet CC, Gupta A, Henzinger TA, Paixao T, Petrov T. 2015. Model checking gene regulatory networks. 9035, 469–483.
[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv
 

2015 | Research Data Reference | IST-REx-ID: 9719 | OA
Wielgoss S, Bergmiller T, Bischofberger AM, Hall AR. 2015. Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria, Dryad, 10.5061/dryad.cj910.
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2015 | Published | Journal Article | IST-REx-ID: 1666 | OA
Tugrul M, Paixao T, Barton NH, Tkačik G. 2015. Dynamics of transcription factor binding site evolution. PLoS Genetics. 11(11).
[Published Version] View | Files available | DOI | WoS
 

2015 | Research Data Reference | IST-REx-ID: 9712
Tugrul M, Paixao T, Barton NH, Tkačik G. 2015. Other fitness models for comparison & for interacting TFBSs, Public Library of Science, 10.1371/journal.pgen.1005639.s001.
[Published Version] View | Files available | DOI
 

2015 | Published | Conference Paper | IST-REx-ID: 1430 | OA
Paixao T, Sudholt D, Heredia J, Trubenova B. 2015. First steps towards a runtime comparison of natural and artificial evolution. Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation. GECCO: Genetic and evolutionary computation conference, 1455–1462.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

2015 | Published | Journal Article | IST-REx-ID: 1840 | OA
Geiger B, Petrov T, Kubin G, Koeppl H. 2015. Optimal Kullback-Leibler aggregation via information bottleneck. IEEE Transactions on Automatic Control. 60(4), 1010–1022.
[Preprint] View | DOI | Download Preprint (ext.) | WoS | arXiv
 

2015 | Published | Journal Article | IST-REx-ID: 1542 | OA
Paixao T, Badkobeh G, Barton NH, Çörüş D, Dang D, Friedrich T, Lehre P, Sudholt D, Sutton A, Trubenova B. 2015. Toward a unifying framework for evolutionary processes. Journal of Theoretical Biology. 383, 28–43.
[Published Version] View | Files available | DOI | WoS
 

2014 | Published | Journal Article | IST-REx-ID: 2083 | OA
Lagator M, Morgan A, Neve P, Colegrave N. 2014. Role of sex and migration in adaptation to sink environments. Evolution. 68(8), 2296–2305.
[Published Version] View | Files available | DOI | WoS
 

2014 | Research Data Reference | IST-REx-ID: 9747 | OA
Lagator M, Morgan A, Neve P, Colegrave N. 2014. Data from: Role of sex and migration in adaptation to sink environments, Dryad, 10.5061/dryad.s42n1.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2014 | Published | Journal Article | IST-REx-ID: 2056 | OA
Ganguly A, Petrov T, Koeppl H. 2014. Markov chain aggregation and its applications to combinatorial reaction networks. Journal of Mathematical Biology. 69(3), 767–797.
[Submitted Version] View | DOI | Download Submitted Version (ext.) | WoS | arXiv
 

2014 | Published | Journal Article | IST-REx-ID: 2036 | OA
Lagator M, Colegrave N, Neve P. 2014. Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proceedings of the Royal Society of London Series B Biological Sciences. 281(1794), 20141679.
[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.) | WoS
 

2014 | Research Data Reference | IST-REx-ID: 9741 | OA
Lagator M, Colegrave N, Neve P. 2014. Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses, Dryad, 10.5061/dryad.85dn7.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2014 | Published | Journal Article | IST-REx-ID: 1913 | OA
Milenković I, Petrov T, Kovács G. 2014. Patterns of hippocampal tau pathology differentiate neurodegenerative dementias. Dementia and Geriatric Cognitive Disorders. 38(5–6), 375–388.
[Published Version] View | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC
 

2014 | Published | Journal Article | IST-REx-ID: 1894 | OA
Grabowska A, Wywiał E, Dunin Horkawicz S, Łasica A, Wösten M, Nagy-Staron AA, Godlewska R, Bocian Ostrzycka K, Pieńkowska K, Łaniewski P, Bujnicki J, Van Putten J, Jagusztyn Krynicka E. 2014. Functional and bioinformatics analysis of two Campylobacter jejuni homologs of the thiol-disulfide oxidoreductase, DsbA. PLoS One. 9(9), e106247.
[Published Version] View | Files available | DOI | WoS
 

2014 | Published | Journal Article | IST-REx-ID: 9931
Dhar R, Bergmiller T, Wagner A. 2014. Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Evolution. 68(6), 1775–1791.
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2014 | Research Data Reference | IST-REx-ID: 9932 | OA
Dhar R, Bergmiller T, Wagner A. 2014. Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes, Dryad, 10.5061/dryad.jc402.
[Published Version] View | Files available | DOI | Download Published Version (ext.)
 

2013 | Published | Conference Paper | IST-REx-ID: 2718 | OA
Barton NH, Paixao T. 2013. Can quantitative and population genetics help us understand evolutionary computation? Proceedings of the 15th annual conference on Genetic and evolutionary computation. GECCO: Genetic and evolutionary computation conference, 1573–1580.
[Submitted Version] View | Files available | DOI
 

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