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127 Publications


2020 |Published| Thesis | IST-REx-ID: 8155 | OA
Gene regulation across scales – how biophysical constraints shape evolution
R. Grah, Gene Regulation across Scales – How Biophysical Constraints Shape Evolution, Institute of Science and Technology Austria, 2020.
[Published Version] View | Files available | DOI
 

2020 |Published| Preprint | IST-REx-ID: 7675 | OA
Normative models of enhancer function
R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
[Preprint] View | Files available | DOI | Download Preprint (ext.)
 

2020 |Published| Journal Article | IST-REx-ID: 7569 | OA
The relation between crosstalk and gene regulation form revisited
R. Grah, T. Friedlander, PLOS Computational Biology 16 (2020).
[Published Version] View | Files available | DOI | WoS
 

2020 | Research Data | IST-REx-ID: 8951 | OA
Sequences of gene regulatory network permutations for the article "Local genetic context shapes the function of a gene regulatory network"
A.A. Nagy-Staron, (2020).
[Published Version] View | Files available | DOI
 

2020 | Research Data | IST-REx-ID: 7383 | OA
Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation
R. Grah, (2020).
[Published Version] View | Files available | DOI
 

2020 |Published| Thesis | IST-REx-ID: 7680 | OA
Synthetic tools for optogenetic and chemogenetic inhibition of cellular signals
S. Kainrath, Synthetic Tools for Optogenetic and Chemogenetic Inhibition of Cellular Signals, Institute of Science and Technology Austria, 2020.
View | Files available | DOI
 

2020 |Published| Journal Article | IST-REx-ID: 7652 | OA
Gene amplification as a form of population-level gene expression regulation
I. Tomanek, R. Grah, M. Lagator, A.M.C. Andersson, J.P. Bollback, G. Tkačik, C.C. Guet, Nature Ecology & Evolution 4 (2020) 612–625.
[Submitted Version] View | Files available | DOI | WoS
 

2020 |Published| Thesis | IST-REx-ID: 8653 | OA
The evolution of gene expression by copy number and point mutations
I. Tomanek, The Evolution of Gene Expression by Copy Number and Point Mutations, Institute of Science and Technology Austria, 2020.
[Published Version] View | Files available | DOI
 

2019 |Published| Journal Article | IST-REx-ID: 6465 | OA
A modular degron library for synthetic circuits in mammalian cells
H. Chassin, M. Müller, M. Tigges, L. Scheller, M. Lang, M. Fussenegger, Nature Communications 10 (2019).
[Published Version] View | Files available | DOI | WoS
 

2019 |Published| Journal Article | IST-REx-ID: 6717 | OA
Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision
C. Igler, S.T. Abedon, Frontiers in Microbiology 10 (2019).
[Published Version] View | Files available | DOI | WoS
 

2019 |Published| Journal Article | IST-REx-ID: 6784 | OA
Molecular noise of innate immunity shapes bacteria-phage ecologies
J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, PLoS Computational Biology 15 (2019).
[Published Version] View | Files available | DOI | WoS
 

2019 | Research Data Reference | IST-REx-ID: 9786
Supporting text and results
J. Ruess, M. Pleska, C.C. Guet, G. Tkačik, (2019).
[Published Version] View | Files available | DOI
 

2019 |Published| Conference Paper | IST-REx-ID: 7147
Transient memory in gene regulation
C.C. Guet, T.A. Henzinger, C. Igler, T. Petrov, A. Sezgin, in:, 17th International Conference on Computational Methods in Systems Biology, Springer Nature, 2019, pp. 155–187.
View | DOI | WoS
 

2019 |Published| Journal Article | IST-REx-ID: 138 | OA
Autoregulation of bacterial gene expression: lessons from the MazEF toxin–antitoxin system
N. Nikolic, Current Genetics 65 (2019) 133–138.
[Published Version] View | Files available | DOI | WoS
 

2019 |Published| Journal Article | IST-REx-ID: 196 | OA
Harmonic dynamics of the Abelian sandpile
M. Lang, M. Shkolnikov, Proceedings of the National Academy of Sciences 116 (2019) 2821–2830.
[Published Version] View | Files available | DOI | Download Published Version (ext.) | WoS | PubMed | Europe PMC | arXiv
 

2019 | Research Data | IST-REx-ID: 7016 | OA
Data for the paper "Gene amplification as a form of population-level gene expression regulation"
I. Tomanek, (2019).
[Published Version] View | Files available | DOI
 

2019 |Published| Thesis | IST-REx-ID: 6371 | OA
On the nature of gene regulatory design - The biophysics of transcription factor binding shapes gene regulation
C. Igler, On the Nature of Gene Regulatory Design - The Biophysics of Transcription Factor Binding Shapes Gene Regulation, Institute of Science and Technology Austria, 2019.
[Published Version] View | Files available | DOI
 

2018 |Published| Journal Article | IST-REx-ID: 305
Fabrication and operation of microfluidic hanging drop networks
P. Misun, A. Birchler, M. Lang, A. Hierlemann, O. Frey, Methods in Molecular Biology 1771 (2018) 183–202.
View | DOI
 

2018 |Published| Journal Article | IST-REx-ID: 723 | OA
How to escape local optima in black box optimisation when non elitism outperforms elitism
P. Oliveto, T. Paixao, J. Pérez Heredia, D. Sudholt, B. Trubenova, Algorithmica 80 (2018) 1604–1633.
[Published Version] View | Files available | DOI | WoS
 

2018 |Published| Journal Article | IST-REx-ID: 503
Lack of cations in flow cytometry buffers affect fluorescence signals by reducing membrane stability and viability of Escherichia coli strains
K. Tomasek, T. Bergmiller, C.C. Guet, Journal of Biotechnology 268 (2018) 40–52.
View | DOI | WoS
 

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