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103 Publications

2025 | Published | Journal Article | IST-REx-ID: 18849 |

Sokolowski, T. R., Gregor, T., Bialek, W., & Tkačik, G. (2025). Deriving a genetic regulatory network from an optimization principle. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2402925121

2025 | Published | Journal Article | IST-REx-ID: 18850 |

Perkins, M. L., Crocker, J., & Tkačik, G. (2025). Chromatin enables precise and scalable gene regulation with factors of limited specificity. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2411887121

2025 | Published | Journal Article | IST-REx-ID: 19036 |

Naumann, L. B., Hertäg, L., Müller, J., Letzkus, J. J., & Sprekeler, H. (2025). Layer-specific control of inhibition by NDNF interneurons. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2408966122

2025 | Published | Journal Article | IST-REx-ID: 19453 |

Chiossi, H. S. C., Nardin, M., Tkačik, G., & Csicsvari, J. L. (2025). Learning reshapes the hippocampal representation hierarchy. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2417025122

2025 | Published | Journal Article | IST-REx-ID: 19499 |

Muroya Lei, S., Chatterjee, K., & Henzinger, T. A. (2025). Hardware-optimal quantum algorithms. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2419273122

2025 | Published | Journal Article | IST-REx-ID: 19627 |

Bombari, S., & Mondelli, M. (2025). Privacy for free in the overparameterized regime. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2423072122

2025 | Published | Journal Article | IST-REx-ID: 19728 |

Zhang, Y., Bao, Z., Smoljan, A., Liu, Y., Wang, H., & Friml, J. (2025). Foraging for water by MIZ1-mediated antagonism between root gravitropism and hydrotropism. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2427315122

2025 | Published | Journal Article | IST-REx-ID: 19965 |

Mcavoy, A., Sehwag, U. M., Hilbe, C., Chatterjee, K., Barfuss, W., Su, Q., … Plotkin, J. B. (2025). Unilateral incentive alignment in two-agent stochastic games. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2319927121

Ucar, M. C., Zane, A., Alanko, J. H., Sixt, M. K., & Hannezo, E. B. (2025). Self-generated chemotaxis of mixed cell populations. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2504064122

2025 | Published | Journal Article | IST-REx-ID: 19626 |

Jain, K., Hauschild, R., Bochkareva, O., Römhild, R., Tkačik, G., & Guet, C. C. (2025). Pulsatile basal gene expression as a fitness determinant in bacteria. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2413709122

Roychoudhry, S., Sageman-Furnas, K., Taylor, H. J., Showpnil, I., Wolverton, C., Friml, J., … Kepinski, S. (2025). Angle dependence as a unifying feature of root graviresponse modules. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2506400122

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2025 | Published | Journal Article | IST-REx-ID: 20702 |

King, D. S., Grzenda, D., Zhu, R., Hudson, N., Foster, I., Cheng, B., & Gagliardi, L. (2025). Cartesian equivariant representations for learning and understanding molecular orbitals. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2510235122

[Published Version] View | Files available | DOI | PubMed | Europe PMC

Zeng, Z., Fan, Z., Simoncelli, M., Chen, C., Liang, T., Chen, Y., … Cheng, B. (2025). Lattice distortion leads to glassy thermal transport in crystalline Cs3Bi2I6Cl3. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2415664122

Parham, J., Sorichetti, V., Cezanne, A., Foo, S., Kuo, Y. W., Hoogenberg, B., … Baum, B. (2025). Temporal and spatial coordination of DNA segregation and cell division in an archaeon. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2513939122

Sheng, F., Gao, Y., Wang, Y., Li, Y., Zhang, J., Zhang, Z., … Zhang, J. (2025). Antagonistic SnRK2 and PID kinases’ action on auxin transport-mediated root gravitropism. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2512274122

2025 | Published | Journal Article | IST-REx-ID: 20727 |

Shi, S., Hübl, M., Grosjean, G. M., Goodrich, C. P., & Waitukaitis, S. R. (2025). Electrostatics overcome acoustic collapse to assemble, adapt, and activate levitated matter. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2516865122

[Published Version] View | Files available | DOI | arXiv

Bao, J., Bony, S., Takasuka, D., & Muller, C. J. (2025). Tropics-wide intraseasonal oscillations. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2511549122

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2025 | Published | Journal Article | IST-REx-ID: 20857 |

Svoboda, J., & Chatterjee, K. (2025). Promoters of cooperation in evolutionary games. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2524109122

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 18108 |

Hausel, T. (2024). Commutative avatars of representations of semisimple Lie groups. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2319341121

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2024 | Published | Journal Article | IST-REx-ID: 18938 |

Springstein, B. L., Paulo, J. A., Park, H., Henry, K., Fleming, E., Feder, Z., … Hochschild, A. (2024). Systematic analysis of nonprogrammed frameshift suppression in E.coli via translational tiling proteomics. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2317453121

[Published Version] View | Files available | DOI | PubMed | Europe PMC

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