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103 Publications


2025 | Published | Journal Article | IST-REx-ID: 18849 | OA
Sokolowski, Thomas R, Thomas Gregor, William Bialek, and Gašper Tkačik. “Deriving a Genetic Regulatory Network from an Optimization Principle.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2402925121.
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2025 | Published | Journal Article | IST-REx-ID: 18850 | OA
Perkins, Mindy Liu, Justin Crocker, and Gašper Tkačik. “Chromatin Enables Precise and Scalable Gene Regulation with Factors of Limited Specificity.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2411887121.
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2025 | Published | Journal Article | IST-REx-ID: 19036 | OA
Naumann, Laura B, Loreen Hertäg, Jennifer Müller, Johannes J. Letzkus, and Henning Sprekeler. “Layer-Specific Control of Inhibition by NDNF Interneurons.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2408966122.
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2025 | Published | Journal Article | IST-REx-ID: 19453 | OA
Chiossi, Heloisa S. C., Michele Nardin, Gašper Tkačik, and Jozsef L Csicsvari. “Learning Reshapes the Hippocampal Representation Hierarchy.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2417025122.
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2025 | Published | Journal Article | IST-REx-ID: 19499 | OA
Muroya Lei, Stefanie, Krishnendu Chatterjee, and Thomas A Henzinger. “Hardware-Optimal Quantum Algorithms.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2419273122.
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2025 | Published | Journal Article | IST-REx-ID: 19627 | OA
Bombari, Simone, and Marco Mondelli. “Privacy for Free in the Overparameterized Regime.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2423072122.
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2025 | Published | Journal Article | IST-REx-ID: 19728 | OA
Zhang, Yuzhou, Zhulatai Bao, Adrijana Smoljan, Yifan Liu, Huihui Wang, and Jiří Friml. “Foraging for Water by MIZ1-Mediated Antagonism between Root Gravitropism and Hydrotropism.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2427315122.
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2025 | Published | Journal Article | IST-REx-ID: 19965 | OA
Mcavoy, Alex, Udari Madhushani Sehwag, Christian Hilbe, Krishnendu Chatterjee, Wolfram Barfuss, Qi Su, Naomi Ehrich Leonard, and Joshua B. Plotkin. “Unilateral Incentive Alignment in Two-Agent Stochastic Games.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2319927121.
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2025 | Published | Journal Article | IST-REx-ID: 20289 | OA | PlanS
Ucar, Mehmet C, Alsberga Zane, Jonna H Alanko, Michael K Sixt, and Edouard B Hannezo. “Self-Generated Chemotaxis of Mixed Cell Populations.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2504064122.
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2025 | Published | Journal Article | IST-REx-ID: 19626 | OA
Jain, Kirti, Robert Hauschild, Olga Bochkareva, Roderich Römhild, Gašper Tkačik, and Calin C Guet. “Pulsatile Basal Gene Expression as a Fitness Determinant in Bacteria.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2413709122.
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2025 | Published | Journal Article | IST-REx-ID: 20663 | OA | PlanS
Roychoudhry, Suruchi, Katelyn Sageman-Furnas, Harry J. Taylor, Iftekhar Showpnil, Chris Wolverton, Jiří Friml, Marta Del Bianco, and Stefan Kepinski. “Angle Dependence as a Unifying Feature of Root Graviresponse Modules.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2506400122.
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2025 | Published | Journal Article | IST-REx-ID: 20702 | OA
King, Daniel S., Daniel Grzenda, Ray Zhu, Nathaniel Hudson, Ian Foster, Bingqing Cheng, and Laura Gagliardi. “Cartesian Equivariant Representations for Learning and Understanding Molecular Orbitals.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2510235122.
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2025 | Published | Journal Article | IST-REx-ID: 20492 | OA | PlanS
Zeng, Zezhu, Zheyong Fan, Michele Simoncelli, Chen Chen, Ting Liang, Yue Chen, Geoff Thornton, and Bingqing Cheng. “Lattice Distortion Leads to Glassy Thermal Transport in Crystalline Cs3Bi2I6Cl3.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2415664122.
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2025 | Published | Journal Article | IST-REx-ID: 20530 | OA | PlanS
Parham, Joe, Valerio Sorichetti, Alice Cezanne, Sherman Foo, Yin Wei Kuo, Baukje Hoogenberg, Arthur Radoux-Mergault, et al. “Temporal and Spatial Coordination of DNA Segregation and Cell Division in an Archaeon.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2513939122.
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2025 | Published | Journal Article | IST-REx-ID: 20635 | OA | PlanS
Sheng, F, Y Gao, Y Wang, Y Li, JA Zhang, Z Zhang, X Qin, et al. “Antagonistic SnRK2 and PID Kinases’ Action on Auxin Transport-Mediated Root Gravitropism.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2512274122.
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2025 | Published | Journal Article | IST-REx-ID: 20727 | OA
Shi, Sue, Maximilian Hübl, Galien M Grosjean, Carl Peter Goodrich, and Scott R Waitukaitis. “Electrostatics Overcome Acoustic Collapse to Assemble, Adapt, and Activate Levitated Matter.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2516865122.
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2025 | Published | Journal Article | IST-REx-ID: 20795 | OA | PlanS
Bao, Jiawei, Sandrine Bony, Daisuke Takasuka, and Caroline J Muller. “Tropics-Wide Intraseasonal Oscillations.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2511549122.
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2025 | Published | Journal Article | IST-REx-ID: 20857 | OA
Svoboda, Jakub, and Krishnendu Chatterjee. “Promoters of Cooperation in Evolutionary Games.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2524109122.
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2024 | Published | Journal Article | IST-REx-ID: 18108 | OA
Hausel, Tamás. “Commutative Avatars of Representations of Semisimple Lie Groups.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2319341121.
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2024 | Published | Journal Article | IST-REx-ID: 18938 | OA
Springstein, Benjamin L, Joao A. Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J. Wade Harper, and Ann Hochschild. “Systematic Analysis of Nonprogrammed Frameshift Suppression in E.Coli via Translational Tiling Proteomics.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2317453121.
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