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113 Publications
2025 | Published | Journal Article | IST-REx-ID: 19453 | 
Chiossi, Heloisa S. C., Michele Nardin, Gašper Tkačik, and Jozsef L Csicsvari. “Learning Reshapes the Hippocampal Representation Hierarchy.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2417025122.
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2025 | Published | Journal Article | IST-REx-ID: 18849 |
Sokolowski, Thomas R, Thomas Gregor, William Bialek, and Gašper Tkačik. “Deriving a Genetic Regulatory Network from an Optimization Principle.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2402925121.
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2025 | Published | Journal Article | IST-REx-ID: 19036 |
Naumann, Laura B, Loreen Hertäg, Jennifer Müller, Johannes J. Letzkus, and Henning Sprekeler. “Layer-Specific Control of Inhibition by NDNF Interneurons.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2408966122.
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2025 | Published | Journal Article | IST-REx-ID: 19499 |
Muroya Lei, Stefanie, Krishnendu Chatterjee, and Thomas A Henzinger. “Hardware-Optimal Quantum Algorithms.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2419273122.
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2025 | Published | Journal Article | IST-REx-ID: 18850 |
Perkins, Mindy Liu, Justin Crocker, and Gašper Tkačik. “Chromatin Enables Precise and Scalable Gene Regulation with Factors of Limited Specificity.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2411887121.
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2025 | Published | Journal Article | IST-REx-ID: 19627 |
Bombari, Simone, and Marco Mondelli. “Privacy for Free in the Overparameterized Regime.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2423072122.
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2025 | Published | Journal Article | IST-REx-ID: 19626 |
Jain, Kirti, Robert Hauschild, Olga Bochkareva, Roderich Römhild, Gašper Tkačik, and Calin C Guet. “Pulsatile Basal Gene Expression as a Fitness Determinant in Bacteria.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2413709122.
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2025 | Published | Journal Article | IST-REx-ID: 19965 |
Mcavoy, Alex, Udari Madhushani Sehwag, Christian Hilbe, Krishnendu Chatterjee, Wolfram Barfuss, Qi Su, Naomi Ehrich Leonard, and Joshua B. Plotkin. “Unilateral Incentive Alignment in Two-Agent Stochastic Games.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2025. https://doi.org/10.1073/pnas.2319927121.
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2024 | Published | Journal Article | IST-REx-ID: 15116 |
Giubertoni, Giulia, Liru Feng, Kevin Klein, Guido Giannetti, Luco Rutten, Yeji Choi, Anouk Van Der Net, et al. “Elucidating the Role of Water in Collagen Self-Assembly by Isotopically Modulating Collagen Hydration.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2313162121.
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2024 | Published | Journal Article | IST-REx-ID: 18526 |
Weiner, Ethan, Elizabeth Berryman, Felix F Frey, Ariadna González Solís, André Leier, Tatiana Marquez Lago, Anđela Šarić, and Marisa S. Otegui. “Endosomal Membrane Budding Patterns in Plants.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2409407121.
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2024 | Published | Journal Article | IST-REx-ID: 15084 |
Koppensteiner, Peter, Pradeep Bhandari, Cihan Önal, Carolina Borges Merjane, Elodie Le Monnier, Utsa Roy, Yukihiro Nakamura, et al. “GABAB Receptors Induce Phasic Release from Medial Habenula Terminals through Activity-Dependent Recruitment of Release-Ready Vesicles.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2301449121.
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2024 | Published | Journal Article | IST-REx-ID: 18525 |
Ruzickova, Natalia, Michal Hledik, and Gašper Tkačik. “Quantitative Omnigenic Model Discovers Interpretable Genome-Wide Associations.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2402340121.
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2024 | Published | Journal Article | IST-REx-ID: 17123 |
Brückner, David, and Gašper Tkačik. “Information Content and Optimization of Self-Organized Developmental Systems.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2322326121.
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2024 | Published | Journal Article | IST-REx-ID: 18938 |
Springstein, Benjamin L, Joao A. Paulo, Hankum Park, Kemardo Henry, Eleanor Fleming, Zoë Feder, J. Wade Harper, and Ann Hochschild. “Systematic Analysis of Nonprogrammed Frameshift Suppression in E.Coli via Translational Tiling Proteomics.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2317453121.
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2024 | Published | Journal Article | IST-REx-ID: 19809 |
Sun, Fei, Simli Mishra, Ulrike Stockert, Ramzy Daou, Naoki Kikugawa, Robin S. Perry, Elena Hassinger, Sean A. Hartnoll, Andrew P. Mackenzie, and Veronika Sunko. “The Lorenz Ratio as a Guide to Scattering Contributions to Transport in Strongly Correlated Metals.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2318159121.
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2024 | Published | Journal Article | IST-REx-ID: 15083 |
Hübner, Valentin, Manuel Staab, Christian Hilbe, Krishnendu Chatterjee, and Maria Kleshnina. “Efficiency and Resilience of Cooperation in Asymmetric Social Dilemmas.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2315558121.
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2024 | Published | Journal Article | IST-REx-ID: 14478 |
Habig, Michael, Anna V Grasse, Judith Müller, Eva H. Stukenbrock, Hanna Leitner, and Sylvia Cremer. “Frequent Horizontal Chromosome Transfer between Asexual Fungal Insect Pathogens.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2316284121.
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2024 | Published | Journal Article | IST-REx-ID: 18703 |
Svoboda, Jakub, and Krishnendu Chatterjee. “Density Amplifiers of Cooperation for Spatial Games.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2024. https://doi.org/10.1073/pnas.2405605121.
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2023 | Published | Journal Article | IST-REx-ID: 18216 |
Rosenberg, Aviv A., Nitsan Yehishalom, Ailie Marx, and Alex M. Bronstein. “An Amino-Domino Model Described by a Cross-Peptide-Bond Ramachandran Plot Defines Amino Acid Pairs as Local Structural Units.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2301064120.
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2023 | Published | Journal Article | IST-REx-ID: 19821 |
Ye, Linda, Yue Sun, Veronika Sunko, Joaquin F. Rodriguez-Nieva, Matthias S. Ikeda, Thanapat Worasaran, Matthew E. Sorensen, Maja D. Bachmann, Joseph Orenstein, and Ian R. Fisher. “Elastocaloric Signatures of Symmetric and Antisymmetric Strain-Tuning of Quadrupolar and Magnetic Phases in DyB2C2.” Proceedings of the National Academy of Sciences. National Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2302800120.
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