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192 Publications
2007 | Thesis | IST-REx-ID: 4559
Stochastic ω-Regular Games
K. Chatterjee, Stochastic ω-Regular Games, University of California, Berkeley, 2007.
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K. Chatterjee, Stochastic ω-Regular Games, University of California, Berkeley, 2007.
2007 | Thesis | IST-REx-ID: 4566
A framework for compositional design and analysis of systems
A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.
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A. Chakrabarti, A Framework for Compositional Design and Analysis of Systems, University of California, Berkeley, 2007.
2007 | Journal Article | IST-REx-ID: 4567
The software model checker BLAST: Applications to software engineering
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.
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D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, International Journal on Software Tools for Technology Transfer 9 (2007) 505–525.
2007 | Conference Paper | IST-REx-ID: 4570
Minimum-time reachability in timed games
T. Brihaye, T.A. Henzinger, V. Prabhu, J. Raskin, in:, Springer, 2007, pp. 825–837.
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T. Brihaye, T.A. Henzinger, V. Prabhu, J. Raskin, in:, Springer, 2007, pp. 825–837.
2007 | Conference Paper | IST-REx-ID: 4573
Configurable software verification: Concretizing the convergence of model checking and program analysis
D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2007, pp. 504–518.
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D. Beyer, T.A. Henzinger, G. Théoduloz, in:, Springer, 2007, pp. 504–518.
2007 | Conference Paper | IST-REx-ID: 4572
Invariant synthesis for combined theories
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, Springer, 2007, pp. 378–394.
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D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, Springer, 2007, pp. 378–394.
2007 | Conference Paper | IST-REx-ID: 4571
Path invariants
D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, ACM, 2007, pp. 300–309.
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D. Beyer, T.A. Henzinger, R. Majumdar, A. Rybalchenko, in:, ACM, 2007, pp. 300–309.
2007 | Conference Paper | IST-REx-ID: 4575
An application of web-service interfaces
D. Beyer, A. Chakrabarti, T.A. Henzinger, S. Seshia, in:, IEEE, 2007, pp. 831–838.
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D. Beyer, A. Chakrabarti, T.A. Henzinger, S. Seshia, in:, IEEE, 2007, pp. 831–838.
2007 | Journal Article | IST-REx-ID: 4626
Concurrent reachability games
L. De Alfaro, T.A. Henzinger, O. Kupferman, Theoretical Computer Science 386 (2007) 188–217.
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L. De Alfaro, T.A. Henzinger, O. Kupferman, Theoretical Computer Science 386 (2007) 188–217.
2007 | Conference Paper | IST-REx-ID: 582
Observing the spin hall effect of light via quantum weak measurements
O. Hosten, P. Kwiat, in:, OSA, 2007.
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O. Hosten, P. Kwiat, in:, OSA, 2007.
2007 | Journal Article | IST-REx-ID: 6150
Glypican LON-2 is a conserved negative regulator of BMP-like signaling in Caenorhabditis elegans
T.L. Gumienny, L.T. MacNeil, H. Wang, M. de Bono, J.L. Wrana, R.W. Padgett, Current Biology 17 (2007) 159–164.
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| PubMed | Europe PMC
T.L. Gumienny, L.T. MacNeil, H. Wang, M. de Bono, J.L. Wrana, R.W. Padgett, Current Biology 17 (2007) 159–164.
2007 | Book Chapter | IST-REx-ID: 6323 | 
An overview of Manin's conjecture for del Pezzo surfaces
T.D. Browning, in:, A Tribute to Gauss and Dirichlet, American Mathematical Society, 2007, pp. 39–56.
[Preprint]
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T.D. Browning, in:, A Tribute to Gauss and Dirichlet, American Mathematical Society, 2007, pp. 39–56.
2007 | Preprint | IST-REx-ID: 6321 |
The Manin conjecture in dimension 2
T.D. Browning, ArXiv (n.d.).
[Preprint]
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T.D. Browning, ArXiv (n.d.).
2007 | Journal Article | IST-REx-ID: 7325
Oscillations in gas channels: Part I. The forgotten player in impedance spectroscopy in PEFCs
I.A. Schneider, S.A. Freunberger, D. Kramer, A. Wokaun, G.G. Scherer, Journal of The Electrochemical Society 154 (2007).
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I.A. Schneider, S.A. Freunberger, D. Kramer, A. Wokaun, G.G. Scherer, Journal of The Electrochemical Society 154 (2007).
2007 | Journal Article | IST-REx-ID: 7323
Consumption and efficiency of a passenger car with a Hydrogen/Oxygen PEFC based hybrid electric drivetrain
F.N. Büchi, G. Paganelli, P. Dietrich, D. Laurent, A. Tsukada, P. Varenne, A. Delfino, R. Kötz, S.A. Freunberger, P.-A. Magne, D. Walser, D. Olsommer, Fuel Cells 7 (2007) 329–335.
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F.N. Büchi, G. Paganelli, P. Dietrich, D. Laurent, A. Tsukada, P. Varenne, A. Delfino, R. Kötz, S.A. Freunberger, P.-A. Magne, D. Walser, D. Olsommer, Fuel Cells 7 (2007) 329–335.
2007 | Journal Article | IST-REx-ID: 7324
On the efficiency of an advanced automotive fuel cell system
F.N. Büchi, S.A. Freunberger, M. Reum, G. Paganelli, A. Tsukada, P. Dietrich, A. Delfino, Fuel Cells 7 (2007) 159–164.
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F.N. Büchi, S.A. Freunberger, M. Reum, G. Paganelli, A. Tsukada, P. Dietrich, A. Delfino, Fuel Cells 7 (2007) 159–164.
2007 | Journal Article | IST-REx-ID: 7753 |
Function of weaponry in females: The use of horns in intrasexual competition for resources in female Soay sheep
M.R. Robinson, L.E.. Kruuk, Biology Letters 3 (2007) 651–654.
[Published Version]
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M.R. Robinson, L.E.. Kruuk, Biology Letters 3 (2007) 651–654.
2007 | Journal Article | IST-REx-ID: 7781
Live fast, die young: Trade-offs between fitness components and sexually antagonistic selection on weaponry in soay sheep
M.R. Robinson, J.G. Pilkington, T.H. Clutton-Brock, J.M. Pemberton, L.E.B. Kruuk, Evolution 60 (2007) 2168–2181.
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M.R. Robinson, J.G. Pilkington, T.H. Clutton-Brock, J.M. Pemberton, L.E.B. Kruuk, Evolution 60 (2007) 2168–2181.
2007 | Journal Article | IST-REx-ID: 7780
Single-molecule electrophoresis of β-hairpin peptides by electrical recordings and Langevin dynamics simulations
C.P. Goodrich, S. Kirmizialtin, B.M. Huyghues-Despointes, A. Zhu, J.M. Scholtz, D.E. Makarov, L. Movileanu, The Journal of Physical Chemistry B 111 (2007) 3332–3335.
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C.P. Goodrich, S. Kirmizialtin, B.M. Huyghues-Despointes, A. Zhu, J.M. Scholtz, D.E. Makarov, L. Movileanu, The Journal of Physical Chemistry B 111 (2007) 3332–3335.
2007 | Journal Article | IST-REx-ID: 8027
Gating deficits in model networks: A path to schizophrenia?
T.P. Vogels, L. Abbott, Pharmacopsychiatry 40 (2007) S73–S77.
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| PubMed | Europe PMC
T.P. Vogels, L. Abbott, Pharmacopsychiatry 40 (2007) S73–S77.
2007 | Journal Article | IST-REx-ID: 8483
Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy
P. Schanda, V. Forge, B. Brutscher, Proceedings of the National Academy of Sciences 104 (2007) 11257–11262.
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P. Schanda, V. Forge, B. Brutscher, Proceedings of the National Academy of Sciences 104 (2007) 11257–11262.
2007 | Journal Article | IST-REx-ID: 8487
UltraSOFAST HMQC NMR and the repetitive acquisition of 2D protein spectra at Hz rates
M. Gal, P. Schanda, B. Brutscher, L. Frydman, Journal of the American Chemical Society 129 (2007) 1372–1377.
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M. Gal, P. Schanda, B. Brutscher, L. Frydman, Journal of the American Chemical Society 129 (2007) 1372–1377.
2007 | Journal Article | IST-REx-ID: 8485
Sensitivity-optimized experiment for the measurement of residual dipolar couplings between amide protons
P. Schanda, E. Lescop, M. Falge, R. Sounier, J. Boisbouvier, B. Brutscher, Journal of Biomolecular NMR 38 (2007) 47–55.
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P. Schanda, E. Lescop, M. Falge, R. Sounier, J. Boisbouvier, B. Brutscher, Journal of Biomolecular NMR 38 (2007) 47–55.
2007 | Journal Article | IST-REx-ID: 8486
Automated spectral compression for fast multidimensional NMR and increased time resolution in real-time NMR spectroscopy
E. Lescop, P. Schanda, R. Rasia, B. Brutscher, Journal of the American Chemical Society 129 (2007) 2756–2757.
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E. Lescop, P. Schanda, R. Rasia, B. Brutscher, Journal of the American Chemical Society 129 (2007) 2756–2757.
2007 | Journal Article | IST-REx-ID: 8484
A set of BEST triple-resonance experiments for time-optimized protein resonance assignment
E. Lescop, P. Schanda, B. Brutscher, Journal of Magnetic Resonance 187 (2007) 163–169.
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E. Lescop, P. Schanda, B. Brutscher, Journal of Magnetic Resonance 187 (2007) 163–169.
2007 | Journal Article | IST-REx-ID: 860
Conversion and compensatory evolution of the γ-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state
O. Plotnikova, F. Kondrashov, P. Vlasov, A. Grigorenko, E. Ginter, E. Rogaev, American Journal of Human Genetics 81 (2007) 32–43.
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O. Plotnikova, F. Kondrashov, P. Vlasov, A. Grigorenko, E. Ginter, E. Rogaev, American Journal of Human Genetics 81 (2007) 32–43.
2007 | Journal Article | IST-REx-ID: 879
Selection for functional uniformity of tuf duplicates in γ-proteobacteria
F. Kondrashov, T. Gurbich, P. Vlasov, Trends in Genetics 23 (2007) 215–218.
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F. Kondrashov, T. Gurbich, P. Vlasov, Trends in Genetics 23 (2007) 215–218.
2007 | Journal Article | IST-REx-ID: 904
Extensive parallelism in protein evolution
G. Bazykin, F. Kondrashov, M. Brudno, A. Poliakov, I. Dubchak, A. Kondrashov, Biology Direct 2 (2007).
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G. Bazykin, F. Kondrashov, M. Brudno, A. Poliakov, I. Dubchak, A. Kondrashov, Biology Direct 2 (2007).
2007 | Journal Article | IST-REx-ID: 9487 |
DNA demethylation in the Arabidopsis genome
J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
[Published Version]
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J. Penterman, D. Zilberman, J.H. Huh, T. Ballinger, S. Henikoff, R.L. Fischer, Proceedings of the National Academy of Sciences 104 (2007) 6752–6757.
2007 | Journal Article | IST-REx-ID: 8511
How often surface diffeomorphisms have infinitely many sinks and hyperbolicity of periodic points near a homoclinic tangency
A. Gorodetski, V. Kaloshin, Advances in Mathematics 208 (2007) 710–797.
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A. Gorodetski, V. Kaloshin, Advances in Mathematics 208 (2007) 710–797.
2007 | Journal Article | IST-REx-ID: 8512
Stretched exponential estimates on growth of the number of periodic points for prevalent diffeomorphisms I
V. Kaloshin, B. Hunt, Annals of Mathematics 165 (2007) 89–170.
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V. Kaloshin, B. Hunt, Annals of Mathematics 165 (2007) 89–170.
2007 | Journal Article | IST-REx-ID: 861
A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
K. Popadin, L. Mamirova, F. Kondrashov, BMC Bioinformatics 8 (2007).
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K. Popadin, L. Mamirova, F. Kondrashov, BMC Bioinformatics 8 (2007).
2007 | Journal Article | IST-REx-ID: 9149 |
Instability and focusing of internal tides in the deep ocean
O. Bühler, C.J. Muller, Journal of Fluid Mechanics 588 (2007) 1–28.
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O. Bühler, C.J. Muller, Journal of Fluid Mechanics 588 (2007) 1–28.
2007 | Other Publication | IST-REx-ID: 9504
The human promoter methylome
D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
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D. Zilberman, The Human Promoter Methylome, Nature Publishing Group, 2007.
2007 | Journal Article | IST-REx-ID: 9524 |
Genome-wide analysis of DNA methylation patterns
D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
[Published Version]
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D. Zilberman, S. Henikoff, Development 134 (2007) 3959–3965.
2007 | Journal Article | IST-REx-ID: 12201
Packaging the male germline in plants
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
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| PubMed | Europe PMC
X. Feng, H.G. Dickinson, Trends in Genetics 23 (2007) 503–510.
2007 | Journal Article | IST-REx-ID: 13424
Synthesis of heterodimeric sphere–prism nanostructures via metastable gold supraspheres
R. Klajn, A.O. Pinchuk, G.C. Schatz, B.A. Grzybowski, Angewandte Chemie International Edition 46 (2007) 8363–8367.
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R. Klajn, A.O. Pinchuk, G.C. Schatz, B.A. Grzybowski, Angewandte Chemie International Edition 46 (2007) 8363–8367.
2007 | Journal Article | IST-REx-ID: 13425 |
Light-controlled self-assembly of reversible and irreversible nanoparticle suprastructures
R. Klajn, K.J.M. Bishop, B.A. Grzybowski, Proceedings of the National Academy of Sciences 104 (2007) 10305–10309.
[Published Version]
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R. Klajn, K.J.M. Bishop, B.A. Grzybowski, Proceedings of the National Academy of Sciences 104 (2007) 10305–10309.
2007 | Journal Article | IST-REx-ID: 13427
Plastic and moldable metals by self-assembly of sticky nanoparticle aggregates
R. Klajn, K.J.M. Bishop, M. Fialkowski, M. Paszewski, C.J. Campbell, T.P. Gray, B.A. Grzybowski, Science 316 (2007) 261–264.
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R. Klajn, K.J.M. Bishop, M. Fialkowski, M. Paszewski, C.J. Campbell, T.P. Gray, B.A. Grzybowski, Science 316 (2007) 261–264.
2007 | Journal Article | IST-REx-ID: 13426
Multilevel surface nano- and microstructuring via sequential photoswelling of dichromated gelatin
M. Paszewski, S.K. Smoukov, R. Klajn, B.A. Grzybowski, Langmuir 23 (2007) 5419–5422.
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M. Paszewski, S.K. Smoukov, R. Klajn, B.A. Grzybowski, Langmuir 23 (2007) 5419–5422.
2007 | Journal Article | IST-REx-ID: 7705
Temporal target restriction of olfactory receptor neurons by semaphorin-1a/plexinA-mediated axon-axon interactions
L.B. Sweeney, A. Couto, Y.-H. Chou, D. Berdnik, B.J. Dickson, L. Luo, T. Komiyama, Neuron 53 (2007) 185–200.
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L.B. Sweeney, A. Couto, Y.-H. Chou, D. Berdnik, B.J. Dickson, L. Luo, T. Komiyama, Neuron 53 (2007) 185–200.
2007 | Journal Article | IST-REx-ID: 7704
Graded expression of semaphorin-1a cell-autonomously directs dendritic targeting of olfactory projection neurons
T. Komiyama, L.B. Sweeney, O. Schuldiner, K.C. Garcia, L. Luo, Cell 128 (2007) 399–410.
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T. Komiyama, L.B. Sweeney, O. Schuldiner, K.C. Garcia, L. Luo, Cell 128 (2007) 399–410.