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9471 Publications

2022 |Published| Journal Article | IST-REx-ID: 15214 |

Heyl, Jeremy, Ilaria Caiazzo, and Harvey B. Richer. “Reconstructing the Pleiades with Gaia EDR3.” The Astrophysical Journal. American Astronomical Society, 2022. https://doi.org/10.3847/1538-4357/ac45fc.

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2022 |Published| Journal Article | IST-REx-ID: 15144

Bravo, Jack Peter Kelly. “SuperFi-Cas9 Exceeds Fidelity, Matches Speed of Original Cas9.” Genetic Engineering & Biotechnology News. Mary Ann Liebert, 2022. https://doi.org/10.1089/gen.42.04.03.

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2022 |Published| Journal Article | IST-REx-ID: 10787 |

Barton, Nicholas H, and Oluwafunmilola O Olusanya. “The Response of a Metapopulation to a Changing Environment.” Philosophical Transactions of the Royal Society B: Biological Sciences. The Royal Society, 2022. https://doi.org/10.1098/rstb.2021.0009.

2022 |Published| Journal Article | IST-REx-ID: 10658 |

Sachdeva, Himani, Oluwafunmilola O Olusanya, and Nicholas H Barton. “Genetic Load and Extinction in Peripheral Populations: The Roles of Migration, Drift and Demographic Stochasticity.” Philosophical Transactions of the Royal Society B. The Royal Society, 2022. https://doi.org/10.1098/rstb.2021.0010.

2022 |Published| Thesis | IST-REx-ID: 12368 |

Arslan, Feyza N. “Remodeling of E-Cadherin-Mediated Contacts via Cortical Flows.” Institute of Science and Technology Austria, 2022. https://doi.org/10.15479/at:ista:12153.

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2022 |Published| Journal Article | IST-REx-ID: 15268 |

Gisonno, Romina A., Tomas Masson, Nahuel A. Ramella, Exequiel E. Barrera, Víctor Romanowski, and M. Alejandra Tricerri. “Evolutionary and Structural Constraints Influencing Apolipoprotein A‐I Amyloid Behavior.” Proteins: Structure, Function, and Bioinformatics. Wiley, 2022. https://doi.org/10.1002/prot.26217.

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2022 |Submitted| Journal Article | IST-REx-ID: 11658 |

Biswas, Ranita, Sebastiano Cultrera di Montesano, Herbert Edelsbrunner, and Morteza Saghafian. “Depth in Arrangements: Dehn–Sommerville–Euler Relations with Applications.” Leibniz International Proceedings on Mathematics. Schloss Dagstuhl - Leibniz Zentrum für Informatik, n.d.

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2022 |Published| Journal Article | IST-REx-ID: 12237 |

Fiedler, Christine, Tobias Kleinhanns, Maria Garcia, Seungho Lee, Mariano Calcabrini, and Maria Ibáñez. “Solution-Processed Inorganic Thermoelectric Materials: Opportunities and Challenges ∇.” Chemistry of Materials. American Chemical Society, 2022. https://doi.org/10.1021/acs.chemmater.2c01967.

2022 |Published| Journal Article | IST-REx-ID: 10211 |

Mondelli, Marco, Christos Thrampoulidis, and Ramji Venkataramanan. “Optimal Combination of Linear and Spectral Estimators for Generalized Linear Models.” Foundations of Computational Mathematics. Springer, 2022. https://doi.org/10.1007/s10208-021-09531-x.

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2022 |Published| Journal Article | IST-REx-ID: 10016 |

Friml, Jiří. “Fourteen Stations of Auxin.” Cold Spring Harbor Perspectives in Biology. Cold Spring Harbor Laboratory, 2022. https://doi.org/10.1101/cshperspect.a039859.

2022 |Published| Journal Article | IST-REx-ID: 10181 |

Ivanov, Grigory, and Mariana S. Lopushanski. “Rectifiable Curves in Proximally Smooth Sets.” Set-Valued and Variational Analysis. Springer Nature, 2022. https://doi.org/10.1007/s11228-021-00612-1.

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2022 |Published| Journal Article | IST-REx-ID: 8538 |

Akopyan, Arseniy, Richard Schwartz, and Serge Tabachnikov. “Billiards in Ellipses Revisited.” European Journal of Mathematics. Springer Nature, 2022. https://doi.org/10.1007/s40879-020-00426-9.

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2022 |Published| Journal Article | IST-REx-ID: 8286 |

Alistarh, Dan-Adrian, Giorgi Nadiradze, and Amirmojtaba Sabour. “Dynamic Averaging Load Balancing on Cycles.” Algorithmica. Springer Nature, 2022. https://doi.org/10.1007/s00453-021-00905-9.

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2022 |Published| Journal Article | IST-REx-ID: 10282 |

Kashkan, Ivan, Mónika Hrtyan, Katarzyna Retzer, Jana Humpolíčková, Aswathy Jayasree, Roberta Filepová, Zuzana Vondráková, et al. “Mutually Opposing Activity of PIN7 Splicing Isoforms Is Required for Auxin-Mediated Tropic Responses in Arabidopsis Thaliana.” New Phytologist. Wiley, 2022. https://doi.org/10.1111/nph.17792.

2022 |Published| Journal Article | IST-REx-ID: 9336 |

Sarabipour, Sarvenaz, Sarah J. Hainer, Feyza N Arslan, Charlotte M. De Winde, Emily Furlong, Natalia Bielczyk, Nafisa M. Jadavji, Aparna P. Shah, and Sejal Davla. “Building and Sustaining Mentor Interactions as a Mentee.” FEBS Journal. Wiley, 2022. https://doi.org/10.1111/febs.15823.

2022 |Published| Journal Article | IST-REx-ID: 10608 |

Weighill, Thomas, Takamitsu Yamauchi, and Nicolò Zava. “Coarse Infinite-Dimensionality of Hyperspaces of Finite Subsets.” European Journal of Mathematics. Springer Nature, 2022. https://doi.org/10.1007/s40879-021-00515-3.

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2022 |Published| Journal Article | IST-REx-ID: 10537 |

Benedikter, Niels P, Phan Thành Nam, Marcello Porta, Benjamin Schlein, and Robert Seiringer. “Bosonization of Fermionic Many-Body Dynamics.” Annales Henri Poincaré. Springer Nature, 2022. https://doi.org/10.1007/s00023-021-01136-y.

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2022 |Published| Journal Article | IST-REx-ID: 9469

Iyiola, Olaniyi S., Cyril D. Enyi, and Yekini Shehu. “Reflected Three-Operator Splitting Method for Monotone Inclusion Problem.” Optimization Methods and Software. Taylor and Francis, 2022. https://doi.org/10.1080/10556788.2021.1924715.

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2022 |Published| Journal Article | IST-REx-ID: 9365

Ogbuisi, Ferdinard U., Yekini Shehu, and Jen Chih Yao. “Convergence Analysis of New Inertial Method for the Split Common Null Point Problem.” Optimization. Taylor and Francis, 2022. https://doi.org/10.1080/02331934.2021.1914035.

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2022 |Published| Journal Article | IST-REx-ID: 9695 |

Glielmo, Aldo, Claudio Zeni, Bingqing Cheng, Gabor Csanyi, and Alessandro Laio. “Ranking the Information Content of Distance Measures.” PNAS Nexus. Oxford Academic, 2022. https://doi.org/10.1093/pnasnexus/pgac039.

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2022 |Published| Journal Article | IST-REx-ID: 15134 |

Schwartz, Evan A., Tess M. McBride, Jack Peter Kelly Bravo, Daniel Wrapp, Peter C. Fineran, Robert D. Fagerlund, and David W. Taylor. “Structural Rearrangements Allow Nucleic Acid Discrimination by Type I-D Cascade.” Nature Communications. Springer Nature, 2022. https://doi.org/10.1038/s41467-022-30402-8.

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2022 |Published| Journal Article | IST-REx-ID: 15131 |

Yelland, James N., Jack Peter Kelly Bravo, Joshua J. Black, David W. Taylor, and Arlen W. Johnson. “A Single 2′-O-Methylation of Ribosomal RNA Gates Assembly of a Functional Ribosome.” Nature Structural & Molecular Biology. Springer Nature, 2022. https://doi.org/10.1038/s41594-022-00891-8.

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2022 |Published| Journal Article | IST-REx-ID: 15133 |

Bravo, Jack Peter Kelly, Cristian Aparicio-Maldonado, Franklin L. Nobrega, Stan J. J. Brouns, and David W. Taylor. “Structural Basis for Broad Anti-Phage Immunity by DISARM.” Nature Communications. Springer Nature, 2022. https://doi.org/10.1038/s41467-022-30673-1.

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2022 |Published| Journal Article | IST-REx-ID: 15132

Bravo, Jack Peter Kelly, Grace N Hibshman, and David W Taylor. “Constructing Next-Generation CRISPR–Cas Tools from Structural Blueprints.” Current Opinion in Biotechnology. Elsevier, 2022. https://doi.org/10.1016/j.copbio.2022.102839.

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2022 |Published| Journal Article | IST-REx-ID: 15136 |

Bravo, Jack Peter Kelly, Mu-Sen Liu, Grace N. Hibshman, Tyler L. Dangerfield, Kyungseok Jung, Ryan S. McCool, Kenneth A. Johnson, and David W. Taylor. “Structural Basis for Mismatch Surveillance by CRISPR–Cas9.” Nature. Springer Nature, 2022. https://doi.org/10.1038/s41586-022-04470-1.

2022 |Submitted| Preprint | IST-REx-ID: 17116 |

Schwartz, Evan A., Jack Peter Kelly Bravo, Luis A. Macias, Caitlyn L. McCafferty, Tyler L. Dangerfield, Jada N. Walker, Jennifer S. Brodbelt, Peter C. Fineran, Robert D. Fagerlund, and David W. Taylor. “Assembly of Multi-Subunit Fusion Proteins into the RNA-Targeting Type III-D CRISPR-Cas Effector Complex.” BioRxiv. Cold Spring Harbor Laboratory, n.d. https://doi.org/10.1101/2022.06.13.496011.

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2022 |Published| Other Publication | IST-REx-ID: 17057 |

Loose, Martin. Cell Scientist to Watch – Martin Loose. Journal of Cell Science. Vol. 135. The Company of Biologists, 2022. https://doi.org/10.1242/jcs.259715.

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2022 |Published| Preprint | IST-REx-ID: 17115 |

O’Brien, Roisin E., Jack Peter Kelly Bravo, Delisa Ramos, Grace N. Hibshman, Jacquelyn T. Wright, and David W. Taylor. “Modes of Inhibition Used by Phage Anti-CRISPRs to Evade Type I-C Cascade.” BioRxiv. Cold Spring Harbor Laboratory, 2022. https://doi.org/10.1101/2022.06.15.496202.

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2022 |Published| Preprint | IST-REx-ID: 17117 |

Bravo, Jack Peter Kelly, Thom Hallmark, Bronson Naegle, Chase L. Beisel, Ryan N. Jackson, and David W. Taylor. “Large-Scale Structural Rearrangements Unleash Indiscriminate Nuclease Activity of CRISPR-Cas12a2.” BioRxiv. Cold Spring Harbor Laboratory, 2022. https://doi.org/10.1101/2022.06.13.495754.

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2022 |Published| Conference Paper | IST-REx-ID: 12536 |

Barbier, Jean, TianQi Hou, Marco Mondelli, and Manuel Saenz. “The Price of Ignorance: How Much Does It Cost to Forget Noise Structure in Low-Rank Matrix Estimation?” In 36th Annual Conference on Neural Information Processing Systems, Vol. 35, 2022.

[Preprint] View | Download Preprint (ext.) | arXiv

2022 |Published| Book Chapter | IST-REx-ID: 17085 |

Floriach-Clark, Jordi, Han Tang, and Viola Willemsen. “Mosses: Accessible Systems for Plant Development Studies.” In Model Organisms in Plant Genetics, edited by Ibrokhim Y. Abdurakhmonov. Intech Open, 2022. https://doi.org/10.5772/intechopen.100535.

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2022 |Published| Conference Paper | IST-REx-ID: 11355 |

Bartocci, Ezio, Thomas Ferrere, Thomas A Henzinger, Dejan Nickovic, and Ana Oliveira Da Costa. “Information-Flow Interfaces.” In Fundamental Approaches to Software Engineering, 13241:3–22. Springer Nature, 2022. https://doi.org/10.1007/978-3-030-99429-7_1.

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2022 |Published| Journal Article | IST-REx-ID: 12081 |

Hledik, Michal, Nicholas H Barton, and Gašper Tkačik. “Accumulation and Maintenance of Information in Evolution.” Proceedings of the National Academy of Sciences. Proceedings of the National Academy of Sciences, 2022. https://doi.org/10.1073/pnas.2123152119.

2022 |Published| Journal Article | IST-REx-ID: 11135 |

Reker, Jana. “On the Operator Norm of a Hermitian Random Matrix with Correlated Entries.” Random Matrices: Theory and Applications. World Scientific, 2022. https://doi.org/10.1142/s2010326322500368.

2022 |Submitted| Preprint | IST-REx-ID: 17157 |

Hausel, Tamás, and Kamil P Rychlewicz. “Spectrum of Equivariant Cohomology as a Fixed Point Scheme.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2212.11836.

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

2022 |Published| Journal Article | IST-REx-ID: 10767 |

Kelemen, Réka K, Marwan N Elkrewi, Anna K. Lindholm, and Beatriz Vicoso. “Novel Patterns of Expression and Recruitment of New Genes on the T-Haplotype, a Mouse Selfish Chromosome.” Proceedings of the Royal Society B: Biological Sciences. The Royal Society, 2022. https://doi.org/10.1098/rspb.2021.1985.

2022 |Published| Journal Article | IST-REx-ID: 11438 |

Li, Vyacheslav, Fritz R Diorico, and Onur Hosten. “Laser Frequency-Offset Locking at 10-Hz-Level Instability Using Hybrid Electronic Filters.” Physical Review Applied. American Physical Society, 2022. https://doi.org/10.1103/physrevapplied.17.054031.

2022 |Published| Journal Article | IST-REx-ID: 17077 |

Ferber, Asaf, Matthew Alan Kwan, Bhargav Narayanan, Ashwin Sah, and Mehtaab Sawhney. “Friendly Bisections of Random Graphs.” Communications of the American Mathematical Society. American Mathematical Society, 2022. https://doi.org/10.1090/cams/13.

[Published Version] View | Files available | DOI | arXiv

2022 |Published| Journal Article | IST-REx-ID: 11471 |

Sack, Stefan, Raimel A Medina Ramos, Alexios Michailidis, Richard Kueng, and Maksym Serbyn. “Avoiding Barren Plateaus Using Classical Shadows.” PRX Quantum. American Physical Society, 2022. https://doi.org/10.1103/prxquantum.3.020365.

[Published Version] View | Files available | DOI | WoS | arXiv

2022 |Published| Conference Paper | IST-REx-ID: 17088 |

Kurtic, Eldar, Daniel Campos, Tuan Nguyen, Elias Frantar, Mark Kurtz, Benjamin Fineran, Michael Goin, and Dan-Adrian Alistarh. “The Optimal BERT Surgeon: Scalable and Accurate Second-Order Pruning for Large Language Models.” In Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, 4163–81. Association for Computational Linguistics, 2022. https://doi.org/10.18653/v1/2022.emnlp-main.279.

[Published Version] View | Files available | DOI | arXiv

2022 |Published| Journal Article | IST-REx-ID: 17071

Mosalaganti, Shyamal, Agnieszka Obarska-Kosinska, Marc Siggel, Reiya Taniguchi, Beata Turoňová, Christian E. Zimmerli, Katarzyna Buczak, et al. “AI-Based Structure Prediction Empowers Integrative Structural Analysis of Human Nuclear Pores.” Science. American Association for the Advancement of Science, 2022. https://doi.org/10.1126/science.abm9506.

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2022 |Published| Journal Article | IST-REx-ID: 17076 |

Hillary, Robert F., Danni A. Gadd, Daniel L. McCartney, Liu Shi, Archie Campbell, Rosie M. Walker, Craig W. Ritchie, et al. “Genome‐ and Epigenome‐wide Studies of Plasma Protein Biomarkers for Alzheimer’s Disease Implicate TBCA and TREM2 in Disease Risk.” Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring. Wiley, 2022. https://doi.org/10.1002/dad2.12280.

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2022 |Published| Journal Article | IST-REx-ID: 17070 |

Mistakidis, S I, Georgios Koutentakis, F Grusdt, P Schmelcher, and H R Sadeghpour. “Inducing Spin-Order with an Impurity: Phase Diagram of the Magnetic Bose Polaron.” New Journal of Physics. IOP Publishing, 2022. https://doi.org/10.1088/1367-2630/ac836c.

[Published Version] View | Files available | DOI | arXiv

2022 |Published| Book Chapter | IST-REx-ID: 17075

Palacín, Manuel, Stefan Bröer, and Gaia Novarino. “Amino Acid Transport Defects.” In Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases, edited by Nenad Blau, Carlo Dionisi Vici, Carlos R. Ferreira, Christine Vianey-Saban, and Clara D.M. van Karnebeek, 2nd ed., 291–312. Cham: Springer Nature, 2022. https://doi.org/10.1007/978-3-030-67727-5_18.

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2022 |Published| Journal Article | IST-REx-ID: 17072 |

Naqvi, Mohsin M., Mario Avellaneda Sarrió, Andrew Roth, Eline J. Koers, Antoine Roland, Vanda Sunderlikova, Günter Kramer, Hays S. Rye, and Sander J. Tans. “Protein Chain Collapse Modulation and Folding Stimulation by GroEL-ES.” Science Advances. American Association for the Advancement of Science, 2022. https://doi.org/10.1126/sciadv.abl6293.

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2022 |Published| Conference Paper | IST-REx-ID: 17086 |

Zhang, Yihan, and Nir Weinberger. “Mean Estimation in High-Dimensional Binary Markov Gaussian Mixture Models.” In 36th Conference on Neural Information Processing Systems, Vol. 35. ML Research Press, 2022.

[Published Version] View | Files available | arXiv

2022 |Published| Journal Article | IST-REx-ID: 17069

Zhong S, Li L, Wang Z, Ge Z, Li Q, Bleckmann A, Wang J, Song Z, Shi Y, Liu T, Li L, Zhou H, Wang Y, Zhang L, Wu H-M, Lai L, Gu H, Dong J, Cheung AY, Dresselhaus T, Qu L-J. 2022. RALF peptide signaling controls the polytubey block in Arabidopsis. Science. 375(6578), 290–296.

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2022 |Published| Journal Article | IST-REx-ID: 17068 |

Navarrete, Fernando, Michelle C Gallei, Aleksandra E. Kornienko, Indira Saado, Mamoona Khan, Khong-Sam Chia, Martin A. Darino, Janos Bindics, and Armin Djamei. “TOPLESS Promotes Plant Immunity by Repressing Auxin Signaling and Is Targeted by the Fungal Effector Naked1.” Plant Communications. Elsevier, 2022. https://doi.org/10.1016/j.xplc.2021.100269.

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2022 |Published| Journal Article | IST-REx-ID: 10736 |

Lagator, Mato, Srdjan Sarikas, Magdalena Steinrück, David Toledo-Aparicio, Jonathan P Bollback, Calin C Guet, and Gašper Tkačik. “Predicting Bacterial Promoter Function and Evolution from Random Sequences.” ELife. eLife Sciences Publications, 2022. https://doi.org/10.7554/eLife.64543.

2022 |Published| Journal Article | IST-REx-ID: 17067 |

Stouffer, Melissa A, R. Khalaf-Nazzal, C. Cifuentes-Diaz, G. Albertini, E. Bandet, G. Grannec, V. Lavilla, et al. “Doublecortin Mutation Leads to Persistent Defects in the Golgi Apparatus and Mitochondria in Adult Hippocampal Pyramidal Cells.” Neurobiology of Disease. Elsevier, 2022. https://doi.org/10.1016/j.nbd.2022.105702.

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