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9096 Publications


2011 | Journal Article | IST-REx-ID: 3287
V. Ruprecht, M. Axmann, S. Wieser, and G. Schuetz, “What can we learn from single molecule trajectories?,” Current Protein & Peptide Science, vol. 12, no. 8. Bentham Science Publishers, pp. 714–724, 2011.
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2011 | Journal Article | IST-REx-ID: 3285
V. Ruprecht, S. Wieser, D. Marguet, and G. Schuetz, “Spot variation fluorescence correlation spectroscopy allows for superresolution chronoscopy of confinement times in membranes,” Biophysical Journal, vol. 100, no. 11. Biophysical Society, pp. 2839–2845, 2011.
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2011 | Conference Paper | IST-REx-ID: 3302 | OA
T. A. Henzinger, A. Singh, V. Singh, T. Wies, and D. Zufferey, “Static scheduling in clouds,” presented at the HotCloud: Workshop on Hot Topics in Cloud Computing, 2011, pp. 1–6.
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2011 | Conference Paper | IST-REx-ID: 3301 | OA
T. A. Henzinger and M. Mateescu, “Tail approximation for the chemical master equation,” presented at the WCSB: Workshop on Computational Systems Biology (TICSP), 2011.
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2011 | Conference Paper | IST-REx-ID: 3299 | OA
T. A. Henzinger and M. Mateescu, “Propagation models for computing biochemical reaction networks,” presented at the CMSB: Computational Methods in Systems Biology, Paris, France, 2011, pp. 1–3.
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2011 | Conference Paper | IST-REx-ID: 3316 | OA
R. Bloem, K. Chatterjee, K. Greimel, T. A. Henzinger, and B. Jobstmann, “Specification-centered robustness,” in 6th IEEE International Symposium on Industrial and Embedded Systems, Vasteras, Sweden, 2011, pp. 176–185.
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2011 | Journal Article | IST-REx-ID: 3318 | OA
E. Eggermann and P. M. Jonas, “How the ‘slow’ Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses,” Nature Neuroscience, vol. 15. Nature Publishing Group, pp. 20–22, 2011.
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2011 | Book Chapter | IST-REx-ID: 3335 | OA
R. Van De Weygaert et al., “Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web,” in Transactions on Computational Science XIV, vol. 6970, M. Gavrilova, K. Tan, and M. Mostafavi, Eds. Springer, 2011, pp. 60–101.
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2011 | Conference Paper | IST-REx-ID: 3329 | OA
E. Berberich, D. Halperin, M. Kerber, and R. Pogalnikova, “Deconstructing approximate offsets,” in Proceedings of the twenty-seventh annual symposium on Computational geometry, Paris, France, 2011, pp. 187–196.
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2011 | Journal Article | IST-REx-ID: 3332 | OA
M. Kerber and M. Sagraloff, “A note on the complexity of real algebraic hypersurfaces,” Graphs and Combinatorics, vol. 27, no. 3. Springer, pp. 419–430, 2011.
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2011 | Conference Paper | IST-REx-ID: 3330 | OA
M. Kerber and M. Sagraloff, “Root refinement for real polynomials,” presented at the ISSAC: International Symposium on Symbolic and Algebraic Computation, California, USA, 2011, pp. 209–216.
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2011 | Conference Paper | IST-REx-ID: 3328 | OA
E. Berberich, M. Hemmer, and M. Kerber, “A generic algebraic kernel for non linear geometric applications,” presented at the SCG: Symposium on Computational Geometry, Paris, France, 2011, pp. 179–186.
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2011 | Journal Article | IST-REx-ID: 3334
H. Edelsbrunner, J. Pach, and G. Ziegler, “Letter from the new editors-in-chief,” Discrete & Computational Geometry, vol. 45, no. 1. Springer, pp. 1–2, 2011.
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2011 | Journal Article | IST-REx-ID: 3353 | OA
S. Tripakis, B. Lickly, T. A. Henzinger, and E. Lee, “A theory of synchronous relational interfaces,” ACM Transactions on Programming Languages and Systems (TOPLAS), vol. 33, no. 4. ACM, 2011.
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2011 | Conference Paper | IST-REx-ID: 3355 | OA
R. Halalai, T. A. Henzinger, and V. Singh, “Quantitative evaluation of BFT protocols,” presented at the QEST: Quantitative Evaluation of Systems, Aachen, Germany, 2011, pp. 255–264.
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2011 | Conference Paper | IST-REx-ID: 3350
K. Chatterjee and R. Majumdar, “Minimum attention controller synthesis for omega regular objectives,” presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Aalborg, Denmark, 2011, vol. 6919, pp. 145–159.
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2011 | Conference Paper | IST-REx-ID: 3351 | OA
K. Chatterjee, L. Doyen, and R. Singh, “On memoryless quantitative objectives,” presented at the FCT: Fundamentals of Computation Theory, Oslo, Norway, 2011, vol. 6914, pp. 148–159.
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2011 | Journal Article | IST-REx-ID: 3354
K. Chatterjee, L. De Alfaro, and T. A. Henzinger, “Qualitative concurrent parity games,” ACM Transactions on Computational Logic (TOCL), vol. 12, no. 4. ACM, 2011.
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2011 | Conference Paper | IST-REx-ID: 3349 | OA
K. Chatterjee and N. Fijalkow, “A reduction from parity games to simple stochastic games,” presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy, 2011, vol. 54, pp. 74–86.
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2011 | Journal Article | IST-REx-ID: 335
M. Ibáñez et al., “Means and limits of control of the shell parameters in hollow nanoparticles obtained by the Kirkendall effect,” Chemistry of Materials, vol. 23, no. 12. American Chemical Society, pp. 3095–3104, 2011.
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2011 | Journal Article | IST-REx-ID: 3352
J. Fisher, D. Harel, and T. A. Henzinger, “Biology as reactivity,” Communications of the ACM, vol. 54, no. 10. ACM, pp. 72–82, 2011.
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2011 | Conference Paper | IST-REx-ID: 3362 | OA
J. Fisher, T. A. Henzinger, D. Nickovic, N. Piterman, A. Singh, and M. Vardi, “Dynamic reactive modules,” presented at the CONCUR: Concurrency Theory, Aachen, Germany, 2011, vol. 6901, pp. 404–418.
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2011 | Conference Paper | IST-REx-ID: 3365 | OA
K. Chatterjee, T. A. Henzinger, B. Jobstmann, and R. Singh, “QUASY: quantitative synthesis tool,” presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Saarbrucken, Germany, 2011, vol. 6605, pp. 267–271.
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2011 | Conference Paper | IST-REx-ID: 3367
C. Chen and M. Kerber, “An output sensitive algorithm for persistent homology,” presented at the SoCG: Symposium on Computational Geometry, Paris, France, 2011, pp. 207–216.
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2011 | Preprint | IST-REx-ID: 3363 | OA
K. Chatterjee, T. A. Henzinger, and M. Tracol, “The decidability frontier for probabilistic automata on infinite words.” ArXiv.
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2011 | Journal Article | IST-REx-ID: 3372 | OA
Abbot P et al. 2011. Inclusive fitness theory and eusociality. Nature. 471(7339), E1–E4.
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2011 | Journal Article | IST-REx-ID: 3371 | OA
M. K. Sixt and C. Parent, “Cells on the move in Philadelphia,” Molecular Biology and Evolution, vol. 22, no. 6. Oxford University Press, p. 724, 2011.
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2011 | Journal Article | IST-REx-ID: 3374 | OA
G. Tkačik and A. Walczak, “Information transmission in genetic regulatory networks a review,” Journal of Physics: Condensed Matter, vol. 23, no. 15. IOP Publishing Ltd., 2011.
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2011 | Journal Article | IST-REx-ID: 3368 | OA
G. Krens, S. Möllmert, and C.-P. J. Heisenberg, “Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants,” PNAS, vol. 108, no. 3. National Academy of Sciences, pp. E9–E10, 2011.
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2011 | Journal Article | IST-REx-ID: 3370 | OA
A. Kupczok, “Consequences of different null models on the tree shape bias of supertree methods,” Systematic Biology, vol. 60, no. 2. Oxford University Press, pp. 218–225, 2011.
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2011 | Journal Article | IST-REx-ID: 3369
A. Pernia-Andrade and P. M. Jonas, “The multiple faces of RIM,” Neuron, vol. 69, no. 2. Elsevier, pp. 185–187, 2011.
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2011 | Journal Article | IST-REx-ID: 3396 | OA
P. Stockinger, C.-P. J. Heisenberg, and J.-L. Maître, “Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube,” Development, vol. 138, no. 21. Company of Biologists, pp. 4673–4683, 2011.
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2011 | Journal Article | IST-REx-ID: 3394 | OA
J. Polechova and N. H. Barton, “Genetic drift widens the expected cline but narrows the expected cline width,” Genetics, vol. 189, no. 1. Genetics Society of America, pp. 227–235, 2011.
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2011 | Journal Article | IST-REx-ID: 3390 | OA
N. H. Barton and A. Etheridge, “The relation between reproductive value and genetic contribution,” Genetics, vol. 188, no. 4. Genetics Society of America, pp. 953–973, 2011.
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2011 | Journal Article | IST-REx-ID: 3391 | OA
H. de Vladar and N. H. Barton, “The contribution of statistical physics to evolutionary biology,” Trends in Ecology and Evolution, vol. 26, no. 8. Cell Press, pp. 424–432, 2011.
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2011 | Journal Article | IST-REx-ID: 3397 | OA
J.-L. Maître and C.-P. J. Heisenberg, “The role of adhesion energy in controlling cell-cell contacts,” Current Opinion in Cell Biology, vol. 23, no. 5. Elsevier, pp. 508–514, 2011.
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2011 | Journal Article | IST-REx-ID: 3405 | OA
H. L. Janovjak, G. Sandoz, and E. Isacoff, “Modern ionotropic glutamate receptor with a K+ selectivity signature sequence,” Nature Communications, vol. 2, no. 232. Nature Publishing Group, pp. 1–6, 2011.
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2011 | Journal Article | IST-REx-ID: 341
W. Li et al., “Morphology evolution of Cu2−xS nanoparticles: from spheres to dodecahedrons,” Chemical Communications, vol. 47, no. 37. Royal Society of Chemistry (RSC) , pp. 10332–10334, 2011.
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2011 | Journal Article | IST-REx-ID: 3429
N. Plachta, M. T. Bollenbach, S. Pease, S. Fraser, and P. Pantazis, “Oct4 kinetics predict cell lineage patterning in the early mammalian embryo,” Nature Cell Biology, vol. 13, no. 2. Nature Publishing Group, pp. 117–123, 2011.
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2011 | Journal Article | IST-REx-ID: 3505 | OA
M. K. Sixt and T. Lämmermann, “In vitro analysis of chemotactic leukocyte migration in 3D environments,” Cell Migration, vol. 769. Springer, pp. 149–165, 2011.
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2011 | Journal Article | IST-REx-ID: 3784 | OA
F. Palero, G. Guerao, P. Clark, and P. Abello, “Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description,” Journal of the Marine Biological Association of the United Kingdom, vol. 91, no. 2. Cambridge University Press, pp. 485–492, 2011.
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2011 | Journal Article | IST-REx-ID: 3781
B. T. Fasy, “The difference in length of curves in R^n,” Acta Sci. Math. (Szeged), vol. 77, no. 1–2. Szegedi Tudományegyetem, pp. 359–367, 2011.
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2011 | Book Chapter | IST-REx-ID: 3796 | OA
H. Edelsbrunner and M. Kerber, “Covering and packing with spheres by diagonal distortion in R^n,” in Rainbow of Computer Science, vol. 6570, C. Calude, G. Rozenberg, and A. Salomaa, Eds. Springer, 2011, pp. 20–35.
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2011 | Journal Article | IST-REx-ID: 3381 | OA
T. A. Henzinger, B. Jobstmann, and V. Wolf, “Formalisms for specifying Markovian population models,” IJFCS: International Journal of Foundations of Computer Science, vol. 22, no. 4. World Scientific Publishing, pp. 823–841, 2011.
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2011 | Journal Article | IST-REx-ID: 386 | OA
Z. Alpichshev, J. G. Analytis, J. H. Chu, I. R. Fisher, and A. Kapitulnik, “STM imaging of a bound state along a step on the surface of the topological insulator Bi2Te3,” Physical Review B - Condensed Matter and Materials Physics, vol. 84, no. 4. American Physical Society, 2011.
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2011 | Journal Article | IST-REx-ID: 3315 | OA
K. Chatterjee, T. A. Henzinger, and V. Prabhu, “Timed parity games: Complexity and robustness,” Logical Methods in Computer Science, vol. 7, no. 4. International Federation of Computational Logic, 2011.
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2011 | Journal Article | IST-REx-ID: 3965
B. Wang, H. Edelsbrunner, and D. Morozov, “Computing elevation maxima by searching the Gauss sphere,” Journal of Experimental Algorithmics, vol. 16, no. 2.2. ACM, pp. 1–13, 2011.
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2011 | Journal Article | IST-REx-ID: 3086
M. Furutani et al., “Polar localized NPH3-like proteins regulate polarity and endocytosis of PIN-FORMED auxin efflux carriers,” Development, vol. 138, no. 10. Company of Biologists, pp. 2069–2078, 2011.
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2011 | Journal Article | IST-REx-ID: 3087
S. Kitakura et al., “Clathrin mediates endocytosis and polar distribution of PIN auxin transporters in Arabidopsis,” Plant Cell, vol. 23, no. 5. American Society of Plant Biologists, pp. 1920–1931, 2011.
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2011 | Journal Article | IST-REx-ID: 3085
Z. Ding et al., “Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis,” Nature Cell Biology, vol. 13, no. 4. Nature Publishing Group, pp. 447–453, 2011.
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