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9096 Publications
2009 | Journal Article | IST-REx-ID: 3061 | 
The PIN-FORMED (PIN) protein family of auxin transporters
P. Křeček, P. Skůpa, J. Libus, S. Naramoto, R. Tejos, J. Friml, E. Zažímalová, Genome Biology 10 (2009).
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P. Křeček, P. Skůpa, J. Libus, S. Naramoto, R. Tejos, J. Friml, E. Zažímalová, Genome Biology 10 (2009).
2009 | Journal Article | IST-REx-ID: 3058
Subcellular homeostasis of phytohormone auxin is mediated by the ER localized PIN5 transporter
J. Mravec, P. Skůpa, A. Bailly, K. Hoyerová, P. Křeček, A. Bielach, J. Petrášek, J. Zhang, V. Gaykova, Y. Stierhof, P. Dobrev, K. Schwarzerová, J. Rolčík, D. Seifertová, C. Luschnig, E. Benková, E. Zažímalová, M. Geisler, J. Friml, Nature 459 (2009) 1136–1140.
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| DOI
J. Mravec, P. Skůpa, A. Bailly, K. Hoyerová, P. Křeček, A. Bielach, J. Petrášek, J. Zhang, V. Gaykova, Y. Stierhof, P. Dobrev, K. Schwarzerová, J. Rolčík, D. Seifertová, C. Luschnig, E. Benková, E. Zažímalová, M. Geisler, J. Friml, Nature 459 (2009) 1136–1140.
2009 | Journal Article | IST-REx-ID: 3055
Phosphoinositide-dependent regulation of VAN3 ARF-GAP localization and activity essential for vascular tissue continuity in plants
S. Naramoto, S. Sawa, K. Koizumi, T. Uemura, T. Ueda, J. Friml, A. Nakano, H. Fukuda, Development 136 (2009) 1529–1538.
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S. Naramoto, S. Sawa, K. Koizumi, T. Uemura, T. Ueda, J. Friml, A. Nakano, H. Fukuda, Development 136 (2009) 1529–1538.
2009 | Journal Article | IST-REx-ID: 3059
PIN auxin efflux carrier polarity is regulated by PINOID kinase mediated recruitment into GNOM independent trafficking in arabidopsis
J. Kleine Vehn, F. Huang, S. Naramoto, J. Zhang, M. Michniewicz, R. Offringa, J. Friml, Plant Cell 21 (2009) 3839–3849.
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J. Kleine Vehn, F. Huang, S. Naramoto, J. Zhang, M. Michniewicz, R. Offringa, J. Friml, Plant Cell 21 (2009) 3839–3849.
2009 | Journal Article | IST-REx-ID: 3056
A regulated auxin minimum is required for seed dispersal in Arabidopsis
K. Sorefan, T. Girin, S. Liljegren, K. Ljung, P. Robles, C. Galván Ampudia, R. Offringa, J. Friml, M. Yanofsky, L. Østergaard, Nature 459 (2009) 583–586.
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| DOI
K. Sorefan, T. Girin, S. Liljegren, K. Ljung, P. Robles, C. Galván Ampudia, R. Offringa, J. Friml, M. Yanofsky, L. Østergaard, Nature 459 (2009) 583–586.
2009 | Journal Article | IST-REx-ID: 3057 |
Auxin transport routes in plant development
J. Petrášek, J. Friml, Development 136 (2009) 2675–2688.
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J. Petrášek, J. Friml, Development 136 (2009) 2675–2688.
2009 | Journal Article | IST-REx-ID: 3060
Cell biology
K. Schumacher, J. Friml, Current Opinion in Plant Biology 12 (2009) 651–652.
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| DOI
K. Schumacher, J. Friml, Current Opinion in Plant Biology 12 (2009) 651–652.
2009 | Conference Paper | IST-REx-ID: 3203
A global perspective on MAP inference for low level vision
O. Woodford, C. Rother, V. Kolmogorov, in:, IEEE, 2009, pp. 2319–2326.
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O. Woodford, C. Rother, V. Kolmogorov, in:, IEEE, 2009, pp. 2319–2326.
2009 | Conference Paper | IST-REx-ID: 3230
A new randomness extraction paradigm for hybrid encryption
E. Kiltz, K.Z. Pietrzak, M. Stam, M. Yung, in:, Springer, 2009, pp. 590–609.
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E. Kiltz, K.Z. Pietrzak, M. Stam, M. Yung, in:, Springer, 2009, pp. 590–609.
2009 | Conference Paper | IST-REx-ID: 3231
On the security of padding based encryption schemes Why We cannot prove OAEP secure in the standard model
E. Kiltz, K.Z. Pietrzak, in:, Springer, 2009, pp. 389–406.
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E. Kiltz, K.Z. Pietrzak, in:, Springer, 2009, pp. 389–406.
2009 | Conference Paper | IST-REx-ID: 3232
A leakage resilient mode of operation
K.Z. Pietrzak, in:, Springer, 2009, pp. 462–482.
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| DOI
K.Z. Pietrzak, in:, Springer, 2009, pp. 462–482.
2009 | Journal Article | IST-REx-ID: 3304
The rate at which asexual populations cross fitness valleys
D. Weissman, M. Desai, D. Fisher, M. Feldman, Theoretical Population Biology 75 (2009) 286–300.
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D. Weissman, M. Desai, D. Fisher, M. Feldman, Theoretical Population Biology 75 (2009) 286–300.
2009 | Journal Article | IST-REx-ID: 337
Reaction regimes on the synthesis of hollow particles by the Kirkendall effect
A. Cabot, M. Ibáñez, P. Guardia, P. Alivisatos, Journal of the American Chemical Society 131 (2009) 11326–11328.
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A. Cabot, M. Ibáñez, P. Guardia, P. Alivisatos, Journal of the American Chemical Society 131 (2009) 11326–11328.
2009 | Journal Article | IST-REx-ID: 3408
Periodic forces trigger a complex mechanical response in ubiquitin
P. Szymczak, H.L. Janovjak, Journal of Molecular Biology 390 (2009) 443–456.
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P. Szymczak, H.L. Janovjak, Journal of Molecular Biology 390 (2009) 443–456.
2009 | Journal Article | IST-REx-ID: 3428
Hydroxyurea triggers cellular responses that actively cause bacterial cell death
M.T. Bollenbach, R. Kishony, Molecular Cell 36 (2009) 728–729.
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| DOI
M.T. Bollenbach, R. Kishony, Molecular Cell 36 (2009) 728–729.
2009 | Conference Paper | IST-REx-ID: 3503 |
Probabilistic systems with limsup and liminf objectives
K. Chatterjee, T.A. Henzinger, in:, Springer, 2009, pp. 32–45.
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K. Chatterjee, T.A. Henzinger, in:, Springer, 2009, pp. 32–45.
2009 | Conference Poster | IST-REx-ID: 3699
Semi-supervised analysis of human fMRI data
M. Blaschko, C. Lampert, A. Bartels, Semi-Supervised Analysis of Human FMRI Data, Berlin Institute of Technology, 2009.
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M. Blaschko, C. Lampert, A. Bartels, Semi-Supervised Analysis of Human FMRI Data, Berlin Institute of Technology, 2009.
2009 | Conference Paper | IST-REx-ID: 3703
Object localization with global and local context kernels
M. Blaschko, C. Lampert, in:, BMVA Press, 2009, pp. 1–11.
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M. Blaschko, C. Lampert, in:, BMVA Press, 2009, pp. 1–11.
2009 | Conference Paper | IST-REx-ID: 3704
Learning to detect unseen object classes by between-class attribute transfer
C. Lampert, H. Nickisch, S. Harmeling, in:, IEEE, 2009, pp. 951–958.
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C. Lampert, H. Nickisch, S. Harmeling, in:, IEEE, 2009, pp. 951–958.
2009 | Conference Paper | IST-REx-ID: 3715
Active structured learning for high-speed object detection
C. Lampert, J. Peters, in:, Springer, 2009, pp. 221–231.
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| DOI
C. Lampert, J. Peters, in:, Springer, 2009, pp. 221–231.
2009 | Conference Poster | IST-REx-ID: 3717
A high-speed object tracker from off-the-shelf components
C. Lampert, J. Peters, A High-Speed Object Tracker from off-the-Shelf Components, IEEE, 2009.
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C. Lampert, J. Peters, A High-Speed Object Tracker from off-the-Shelf Components, IEEE, 2009.
2009 | Journal Article | IST-REx-ID: 3737
Optimizing information flow in small genetic networks
G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 80 (2009).
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G. Tkačik, A. Walczak, W. Bialek, Physical Review E Statistical Nonlinear and Soft Matter Physics 80 (2009).
2009 | Journal Article | IST-REx-ID: 3733
The dynamics of adaptation on correlated fitness landscapes
S. Kryazhimskiy, G. Tkačik, J. Plotkin, PNAS 106 (2009) 18638–18643.
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S. Kryazhimskiy, G. Tkačik, J. Plotkin, PNAS 106 (2009) 18638–18643.
2009 | Preprint | IST-REx-ID: 3732 |
Spin glass models for a network of real neurons
G. Tkačik, E. Schneidman, M. Berry, W. Bialek, ArXiv q-NC (2009).
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G. Tkačik, E. Schneidman, M. Berry, W. Bialek, ArXiv q-NC (2009).
2009 | Book Chapter | IST-REx-ID: 3747
Cell Biology: Networks, regulation, pathways
G. Tkačik, W. Bialek, in:, R. Meyers (Ed.), Encyclopedia of Complexity and Systems Science, Springer, 2009, pp. 719–741.
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G. Tkačik, W. Bialek, in:, R. Meyers (Ed.), Encyclopedia of Complexity and Systems Science, Springer, 2009, pp. 719–741.
2009 | Journal Article | IST-REx-ID: 3764
Deforming meshes that split and merge
C. Wojtan, N. Thürey, M. Gross, G. Turk, ACM Transactions on Graphics 28 (2009).
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C. Wojtan, N. Thürey, M. Gross, G. Turk, ACM Transactions on Graphics 28 (2009).
2009 | Journal Article | IST-REx-ID: 3768
Comment on '{A} congruence index for testing topological similarity between trees'.
A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
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A. Kupczok, A. Von Haeseler, Bioinformatics 25 (2009) 147–149.
2009 | Journal Article | IST-REx-ID: 3780 |
The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails
A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
[Submitted Version]
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A. Davison, N.H. Barton, B. Clarke, Journal of Evolutionary Biology 22 (2009) 1624–1635.
2009 | Journal Article | IST-REx-ID: 3828
Functional proteomics identify cornichon proteins as auxiliary subunits of AMPA receptors
J. Schwenk, N. Harmel, G. Zolles, W. Bildl, Á. Kulik, B. Heimrich, O. Chisaka, P.M. Jonas, U. Schulte, B. Fakler, N. Klocker, Science 323 (2009) 1313–9.
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J. Schwenk, N. Harmel, G. Zolles, W. Bildl, Á. Kulik, B. Heimrich, O. Chisaka, P.M. Jonas, U. Schulte, B. Fakler, N. Klocker, Science 323 (2009) 1313–9.
2009 | Conference Paper | IST-REx-ID: 3843 |
Fast adaptive uniformization of the chemical master equation
F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
[Submitted Version]
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F. Didier, T.A. Henzinger, M. Mateescu, V. Wolf, in:, IEEE, 2009, pp. 118–127.
2009 | Conference Paper | IST-REx-ID: 3841 |
Formalisms for specifying Markovian population models
T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
[Submitted Version]
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T.A. Henzinger, B. Jobstmann, V. Wolf, in:, Springer, 2009, pp. 3–23.
2009 | Conference Paper | IST-REx-ID: 3844 |
Distributed, modular HTL
T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
[Submitted Version]
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T.A. Henzinger, C. Kirsch, E. Marques, A. Sokolova, in:, IEEE, 2009, pp. 171–180.
2009 | Conference Paper | IST-REx-ID: 3871 |
Probabilistic weighted automata
K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
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K. Chatterjee, L. Doyen, T.A. Henzinger, in:, Springer, 2009, pp. 244–258.
2009 | Journal Article | IST-REx-ID: 3870 |
Finitary winning in omega-regular games
K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
[Submitted Version]
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K. Chatterjee, T.A. Henzinger, F. Horn, ACM Transactions on Computational Logic (TOCL) 11 (2009).
2009 | Journal Article | IST-REx-ID: 3869
Qualitative logics and equivalences for probabilistic systems
K. Chatterjee, L. De Alfaro, M. Faella, A. Legay, Logical Methods in Computer Science 5 (2009).
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K. Chatterjee, L. De Alfaro, M. Faella, A. Legay, Logical Methods in Computer Science 5 (2009).
2009 | Journal Article | IST-REx-ID: 3946 |
Analogies in the evolution of individual and social immunity
S. Cremer, M.K. Sixt, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 364 (2009) 129–142.
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S. Cremer, M.K. Sixt, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 364 (2009) 129–142.
2009 | Journal Article | IST-REx-ID: 3947
Cdc42-dependent leading edge coordination is essential for interstitial dendritic cell migration (Plenary Paper)
T. Lämmermann, J. Renkawitz, X. Wu, K. Hirsch, C. Brakebusch, M.K. Sixt, Blood 113 (2009) 5703–5710.
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T. Lämmermann, J. Renkawitz, X. Wu, K. Hirsch, C. Brakebusch, M.K. Sixt, Blood 113 (2009) 5703–5710.
2009 | Journal Article | IST-REx-ID: 3948
β1 integrins differentially control extravasation of inflammatory cell subsets into the CNS during autoimmunity
M. Bauer, C. Brakebusch, C. Coisne, M.K. Sixt, H. Wekerle, B. Engelhardt, R. Fässler, PNAS 106 (2009) 1920–1925.
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M. Bauer, C. Brakebusch, C. Coisne, M.K. Sixt, H. Wekerle, B. Engelhardt, R. Fässler, PNAS 106 (2009) 1920–1925.
2009 | Journal Article | IST-REx-ID: 3949
Cytohesin-1 controls the activation of RhoA and modulates integrin-dependent adhesion and migration of dendritic cells
T. Quast, B. Tappertzhofen, C. Schild, J. Grell, N. Czeloth, R. Förster, R. Alon, L. Fraemohs, K. Dreck, C. Weber, T. Lämmermann, M.K. Sixt, W. Kolanus, Blood 113 (2009) 5801–5810.
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| DOI
T. Quast, B. Tappertzhofen, C. Schild, J. Grell, N. Czeloth, R. Förster, R. Alon, L. Fraemohs, K. Dreck, C. Weber, T. Lämmermann, M.K. Sixt, W. Kolanus, Blood 113 (2009) 5801–5810.
2009 | Journal Article | IST-REx-ID: 4136 |
Species' range: Adaptation in space and time
J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) E186–E204.
[Published Version]
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J. Polechova, N.H. Barton, G. Marion, American Naturalist 174 (2009) E186–E204.
2009 | Journal Article | IST-REx-ID: 4149
The role of the extracellular matrix in Kupffer's vesicle formation in zebrafish
G. Soete, C.-P.J. Heisenberg, Mechanisms of Development 126 (2009) S168–S168.
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G. Soete, C.-P.J. Heisenberg, Mechanisms of Development 126 (2009) S168–S168.
2009 | Journal Article | IST-REx-ID: 4165
Quantitative approaches in developmental biology
A. Oates, N. Gorfinkiel, M. Gonzalez Gaitan, C.-P.J. Heisenberg, Nature Reviews Genetics 10 (2009) 517–530.
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| DOI
A. Oates, N. Gorfinkiel, M. Gonzalez Gaitan, C.-P.J. Heisenberg, Nature Reviews Genetics 10 (2009) 517–530.
2009 | Journal Article | IST-REx-ID: 4192
Regulation of planar cell polarity signalling by the prenylation pathway
M. Kai, N. Buchan, C.-P.J. Heisenberg, M. Tada, Mechanisms of Development 126 (2009) S132–S132.
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| DOI
M. Kai, N. Buchan, C.-P.J. Heisenberg, M. Tada, Mechanisms of Development 126 (2009) S132–S132.
2009 | Journal Article | IST-REx-ID: 4223
Discovery of a Small Molecule that Blocks Wall Teichoic Acid Biosynthesis in Staphylococcus aureus
J. Swoboda, T. Meredith, J. Campbell, S. Brown, T. Suzuki, M.T. Bollenbach, A. Malhowski, R. Kishony, M. Gilmore, S. Walker, ACS Chemical Biology 4 (2009) 875–883.
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J. Swoboda, T. Meredith, J. Campbell, S. Brown, T. Suzuki, M.T. Bollenbach, A. Malhowski, R. Kishony, M. Gilmore, S. Walker, ACS Chemical Biology 4 (2009) 875–883.
2009 | Journal Article | IST-REx-ID: 4228
Nonoptimal Microbial Response to Antibiotics Underlies Suppressive Drug Interactions
T. Bollenbach, S. Quan, R.P. Chait, R. Kishony, Cell 139 (2009) 707–718.
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| DOI
T. Bollenbach, S. Quan, R.P. Chait, R. Kishony, Cell 139 (2009) 707–718.
2009 | Journal Article | IST-REx-ID: 4242 |
The evolution of strong reproductive isolation
N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
[Submitted Version]
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N.H. Barton, M. De Cara, Evolution; International Journal of Organic Evolution 63 (2009) 1171–1190.
2009 | Conference Paper | IST-REx-ID: 4365
Abstraction Refinement for Quantified Array Assertions
M. Seghir, A. Podelski, T. Wies, in:, Springer, 2009, pp. 3–18.
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| DOI
M. Seghir, A. Podelski, T. Wies, in:, Springer, 2009, pp. 3–18.
2009 | Journal Article | IST-REx-ID: 3047
ABCB19 PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis
B. Titapiwatanakun, J. Blakeslee, A. Bandyopadhyay, H. Yang, J. Mravec, M. Sauer, Y. Cheng, J. Adamec, A. Nagashima, M. Geisler, T. Sakai, J. Friml, W. Peer, A. Murphy, Plant Journal 57 (2009) 27–44.
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B. Titapiwatanakun, J. Blakeslee, A. Bandyopadhyay, H. Yang, J. Mravec, M. Sauer, Y. Cheng, J. Adamec, A. Nagashima, M. Geisler, T. Sakai, J. Friml, W. Peer, A. Murphy, Plant Journal 57 (2009) 27–44.
2009 | Journal Article | IST-REx-ID: 3049
Cytokinins modulate auxin induced organogenesis in plants via regulation of the auxin efflux
M. Pernisová, P. Klíma, J. Horák, M. Válková, J. Malbeck, P. Souček, P. Reichman, K. Hoyerová, J. Dubová, J. Friml, E. Zažímalová, J. Hejátko, PNAS 106 (2009) 3609–3614.
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M. Pernisová, P. Klíma, J. Horák, M. Válková, J. Malbeck, P. Souček, P. Reichman, K. Hoyerová, J. Dubová, J. Friml, E. Zažímalová, J. Hejátko, PNAS 106 (2009) 3609–3614.
2009 | Journal Article | IST-REx-ID: 3050
Cytokinin regulates root meristem activity via modulation of the polar auxin transport
K. Růžička, M. Šimášková, J. Duclercq, J. Petrášek, E. Zažímalová, S. Simon, J. Friml, M. Van Montagu, E. Benková, PNAS 106 (2009) 4284–4289.
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K. Růžička, M. Šimášková, J. Duclercq, J. Petrášek, E. Zažímalová, S. Simon, J. Friml, M. Van Montagu, E. Benková, PNAS 106 (2009) 4284–4289.