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9084 Publications
2005 | Journal Article | IST-REx-ID: 4171
Shield formation at the onset of zebrafish gastrulation
J. Montero, L. Carvalho, M. Wilsch Bräuninger, B. Kilian, C. Mustafa, C.-P.J. Heisenberg, Development 132 (2005) 1187–1198.
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| DOI
J. Montero, L. Carvalho, M. Wilsch Bräuninger, B. Kilian, C. Mustafa, C.-P.J. Heisenberg, Development 132 (2005) 1187–1198.
2005 | Journal Article | IST-REx-ID: 4249
Speciation through competition: A critical review
J. Polechova, N.H. Barton, Evolution; International Journal of Organic Evolution 59 (2005) 1194–1210.
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J. Polechova, N.H. Barton, Evolution; International Journal of Organic Evolution 59 (2005) 1194–1210.
2005 | Journal Article | IST-REx-ID: 4251
Evolution of recombination due to random drift
N.H. Barton, S. Otto, Genetics 169 (2005) 2353–2370.
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N.H. Barton, S. Otto, Genetics 169 (2005) 2353–2370.
2005 | Journal Article | IST-REx-ID: 4252 | 
Theoretical models of selection and mutationon quantitative traits
T. Johnson, N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360 (2005) 1411–1425.
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T. Johnson, N.H. Barton, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 360 (2005) 1411–1425.
2005 | Conference Paper | IST-REx-ID: 4404
Synthesis of interface specifications for Java classes
R. Alur, P. Cerny, P. Madhusudan, W. Nam, in:, ACM, 2005, pp. 98–109.
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R. Alur, P. Cerny, P. Madhusudan, W. Nam, in:, ACM, 2005, pp. 98–109.
2005 | Conference Paper | IST-REx-ID: 4412
Trading end-to-end latency for composability
S. Matic, T.A. Henzinger, in:, IEEE, 2005, pp. 99–110.
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S. Matic, T.A. Henzinger, in:, IEEE, 2005, pp. 99–110.
2005 | Conference Paper | IST-REx-ID: 4418
A programmable microkernel for real-time systems
C. Kirsch, M. Sanvido, T.A. Henzinger, in:, ACM, 2005, pp. 35–45.
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C. Kirsch, M. Sanvido, T.A. Henzinger, in:, ACM, 2005, pp. 35–45.
2005 | Journal Article | IST-REx-ID: 4454
A classification of symbolic transition systems
T.A. Henzinger, R. Majumdar, J. Raskin, ACM Transactions on Computational Logic (TOCL) 6 (2005) 1–32.
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T.A. Henzinger, R. Majumdar, J. Raskin, ACM Transactions on Computational Logic (TOCL) 6 (2005) 1–32.
2005 | Conference Paper | IST-REx-ID: 4455
Quantifying similarities between timed systems
T.A. Henzinger, R. Majumdar, V. Prabhu, in:, Springer, 2005, pp. 226–241.
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T.A. Henzinger, R. Majumdar, V. Prabhu, in:, Springer, 2005, pp. 226–241.
2005 | Conference Paper | IST-REx-ID: 4456
Permissive interfaces
T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2005, pp. 31–40.
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T.A. Henzinger, R. Jhala, R. Majumdar, in:, ACM, 2005, pp. 31–40.
2005 | Conference Paper | IST-REx-ID: 4457
Composable code generation for distributed Giotto
T.A. Henzinger, C. Kirsch, S. Matic, in:, ACM, 2005, pp. 21–30.
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T.A. Henzinger, C. Kirsch, S. Matic, in:, ACM, 2005, pp. 21–30.
2005 | Conference Paper | IST-REx-ID: 4536
Automatic rectangular refinement of affine hybrid systems
L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2005, pp. 144–161.
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L. Doyen, T.A. Henzinger, J. Raskin, in:, Springer, 2005, pp. 144–161.
2005 | Conference Paper | IST-REx-ID: 4541
Semiperfect-information games
K. Chatterjee, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 1–18.
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K. Chatterjee, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2005, pp. 1–18.
2005 | Conference Paper | IST-REx-ID: 4553
The complexity of stochastic Rabin and Streett games
K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 878–890.
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K. Chatterjee, L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 878–890.
2005 | Conference Paper | IST-REx-ID: 4554
Mean-payoff parity games
K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, IEEE, 2005, pp. 178–187.
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K. Chatterjee, T.A. Henzinger, M. Jurdziński, in:, IEEE, 2005, pp. 178–187.
2005 | Conference Paper | IST-REx-ID: 4560
Verifying quantitative properties using bound functions
A. Chakrabarti, K. Chatterjee, T.A. Henzinger, O. Kupferman, R. Majumdar, in:, Springer, 2005, pp. 50–64.
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A. Chakrabarti, K. Chatterjee, T.A. Henzinger, O. Kupferman, R. Majumdar, in:, Springer, 2005, pp. 50–64.
2005 | Conference Paper | IST-REx-ID: 4557
Counterexample-guided planning
K. Chatterjee, T.A. Henzinger, R. Jhala, R. Majumdar, in:, AUAI Press, 2005, pp. 104–111.
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K. Chatterjee, T.A. Henzinger, R. Jhala, R. Majumdar, in:, AUAI Press, 2005, pp. 104–111.
2005 | Conference Paper | IST-REx-ID: 4579
Checking memory safety with BLAST
D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2005, pp. 2–18.
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D. Beyer, T.A. Henzinger, R. Jhala, R. Majumdar, in:, Springer, 2005, pp. 2–18.
2005 | Conference Paper | IST-REx-ID: 4576
Web service interfaces
D. Beyer, A. Chakrabarti, T.A. Henzinger, in:, ACM, 2005, pp. 148–159.
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D. Beyer, A. Chakrabarti, T.A. Henzinger, in:, ACM, 2005, pp. 148–159.
2005 | Journal Article | IST-REx-ID: 4625
Model checking discounted temporal properties
L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, Theoretical Computer Science 345 (2005) 139–170.
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L. De Alfaro, M. Faella, T.A. Henzinger, R. Majumdar, M. Stoelinga, Theoretical Computer Science 345 (2005) 139–170.
2005 | Conference Paper | IST-REx-ID: 4624
Interface-based design
L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 83–104.
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L. De Alfaro, T.A. Henzinger, in:, Springer, 2005, pp. 83–104.
2005 | Conference Paper | IST-REx-ID: 575
Counterfactual quantum computation
O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.
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O. Hosten, M. Rakher, J. Barreiro, N. Peters, P. Kwiat, in:, IEEE, 2005, pp. 365–367.
2005 | Journal Article | IST-REx-ID: 6153
Neuronal substrates of complex behaviors in C. elegans
M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.
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| PubMed | Europe PMC
M. de Bono, A. Villu Maricq, Annual Review of Neuroscience 28 (2005) 451–501.
2005 | Journal Article | IST-REx-ID: 6154
Experience-dependent modulation of C. elegans behavior by ambient oxygen
B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917.
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B.H.H. Cheung, M. Cohen, C. Rogers, O. Albayram, M. de Bono, Current Biology 15 (2005) 905–917.
2005 | Journal Article | IST-REx-ID: 8028 |
Signal propagation and logic gating in networks of integrate-and-fire neurons
T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.
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T.P. Vogels, L.F. Abbott, Journal of Neuroscience 25 (2005) 10786–10795.
2005 | Journal Article | IST-REx-ID: 8029
Neural network dynamics
T.P. Vogels, K. Rajan, L.F. Abbott, Annual Review of Neuroscience 28 (2005) 357–376.
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T.P. Vogels, K. Rajan, L.F. Abbott, Annual Review of Neuroscience 28 (2005) 357–376.
2005 | Journal Article | IST-REx-ID: 9491 |
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
[Published Version]
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R.K. Tran, J.G. Henikoff, D. Zilberman, R.F. Ditt, S.E. Jacobsen, S. Henikoff, Current Biology 15 (2005) 154–159.
2005 | Journal Article | IST-REx-ID: 9514 |
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
[Published Version]
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R.K. Tran, D. Zilberman, C. de Bustos, R.F. Ditt, J.G. Henikoff, A.M. Lindroth, J. Delrow, T. Boyle, S. Kwong, T.D. Bryson, S.E. Jacobsen, S. Henikoff, Genome Biology 6 (2005).
2005 | Journal Article | IST-REx-ID: 843
Distribution of the strength of selection against amino acid replacements in human proteins
L. Yampolsky, F. Kondrashov, A. Kondrashov, Human Molecular Genetics 14 (2005) 3191–3201.
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L. Yampolsky, F. Kondrashov, A. Kondrashov, Human Molecular Genetics 14 (2005) 3191–3201.
2005 | Journal Article | IST-REx-ID: 8491
SOFAST-HMQC experiments for recording two-dimensional deteronuclear correlation spectra of proteins within a few seconds
P. Schanda, Ē. Kupče, B. Brutscher, Journal of Biomolecular NMR 33 (2005) 199–211.
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P. Schanda, Ē. Kupče, B. Brutscher, Journal of Biomolecular NMR 33 (2005) 199–211.
2005 | Journal Article | IST-REx-ID: 8492
Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds
P. Schanda, B. Brutscher, Journal of the American Chemical Society 127 (2005) 8014–8015.
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P. Schanda, B. Brutscher, Journal of the American Chemical Society 127 (2005) 8014–8015.
2005 | Journal Article | IST-REx-ID: 8516
On diffusion in high-dimensional Hamiltonian systems
J. Bourgain, V. Kaloshin, Journal of Functional Analysis 229 (2005) 1–61.
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J. Bourgain, V. Kaloshin, Journal of Functional Analysis 229 (2005) 1–61.
2005 | Journal Article | IST-REx-ID: 877
The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution
F. Kondrashov, Biofizika 50 (2005) 389–395.
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F. Kondrashov, Biofizika 50 (2005) 389–395.
2005 | Journal Article | IST-REx-ID: 878
In search of the limits of evolution
F. Kondrashov, Nature Genetics 37 (2005) 9–10.
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| DOI
F. Kondrashov, Nature Genetics 37 (2005) 9–10.
2005 | Journal Article | IST-REx-ID: 882
Prediction of pathogenic mutations in mitochondrially encoded human tRNAs
F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.
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F. Kondrashov, Human Molecular Genetics 14 (2005) 2415–2419.
2005 | Journal Article | IST-REx-ID: 880
The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus
F. Kondrashov, Biofizika 50 (2005) 396–403.
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F. Kondrashov, Biofizika 50 (2005) 396–403.
2005 | Journal Article | IST-REx-ID: 893
A universal trend of amino acid gain and loss in protein evolution
I. Jordan, F. Kondrashov, I. Adzhubeǐ, Y. Wolf, E. Koonin, A. Kondrashov, S. Sunyaev, Nature 433 (2005) 633–638.
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I. Jordan, F. Kondrashov, I. Adzhubeǐ, Y. Wolf, E. Koonin, A. Kondrashov, S. Sunyaev, Nature 433 (2005) 633–638.
2005 | Journal Article | IST-REx-ID: 9529
Epigenetic inheritance in Arabidopsis: Selective silence
D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
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D. Zilberman, S. Henikoff, Current Opinion in Genetics and Development 15 (2005) 557–562.
2005 | Journal Article | IST-REx-ID: 13431
Cutting into solids with micropatterned gels
S.K. Smoukov, K.J.M. Bishop, R. Klajn, C.J. Campbell, B.A. Grzybowski, Advanced Materials 17 (2005) 1361–1365.
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S.K. Smoukov, K.J.M. Bishop, R. Klajn, C.J. Campbell, B.A. Grzybowski, Advanced Materials 17 (2005) 1361–1365.
2005 | Journal Article | IST-REx-ID: 13433
Applications, properties and synthesis of w-functionalized n-alkanethiols and disulfides - the building blocks of self-assembled monolayers
D. Witt, R. Klajn, P. Barski, B. Grzybowski, Current Organic Chemistry 8 (2005) 1763–1797.
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D. Witt, R. Klajn, P. Barski, B. Grzybowski, Current Organic Chemistry 8 (2005) 1763–1797.
2005 | Journal Article | IST-REx-ID: 13432
One-step multilevel microfabrication by reaction−diffusion
C.J. Campbell, R. Klajn, M. Fialkowski, B.A. Grzybowski, Langmuir 21 (2005) 418–423.
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C.J. Campbell, R. Klajn, M. Fialkowski, B.A. Grzybowski, Langmuir 21 (2005) 418–423.
2004 | Journal Article | IST-REx-ID: 11762 |
Algorithmic challenges in web search engines
M.H. Henzinger, Internet Mathematics 1 (2004) 115–123.
[Published Version]
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M.H. Henzinger, Internet Mathematics 1 (2004) 115–123.
2004 | Conference Paper | IST-REx-ID: 11801
Algorithmic aspects of web search engines
M.H. Henzinger, in:, 2th Annual European Symposium on Algorithms, Springer Nature, 2004, p. 3.
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M.H. Henzinger, in:, 2th Annual European Symposium on Algorithms, Springer Nature, 2004, p. 3.
2004 | Conference Paper | IST-REx-ID: 11800
The past, present, and future of web search engines
M.H. Henzinger, in:, 31st International Colloquium on Automata, Languages and Programming, Springer Nature, 2004, p. 3.
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M.H. Henzinger, in:, 31st International Colloquium on Automata, Languages and Programming, Springer Nature, 2004, p. 3.
2004 | Conference Paper | IST-REx-ID: 11859
The past, present, and future of web information retrieval
M.H. Henzinger, in:, SPIE Proceedings, Society of Photo-Optical Instrumentation Engineers, 2004, pp. 23–26.
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M.H. Henzinger, in:, SPIE Proceedings, Society of Photo-Optical Instrumentation Engineers, 2004, pp. 23–26.
2004 | Journal Article | IST-REx-ID: 11877 |
Extracting knowledge from the World Wide Web
M.H. Henzinger, S. Lawrence, Proceedings of the National Academy of Sciences 101 (2004) 5186–5191.
[Published Version]
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M.H. Henzinger, S. Lawrence, Proceedings of the National Academy of Sciences 101 (2004) 5186–5191.
2004 | Journal Article | IST-REx-ID: 12658
Spatial and temporal variability of meteorological variables at Haut Glacier d'Arolla (Switzerland) during the ablation season 2001: Measurements and simulations
U. Strasser, J. Corripio, F. Pellicciotti, P. Burlando, B. Brock, M. Funk, Journal of Geophysical Research: Atmospheres 109 (2004).
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U. Strasser, J. Corripio, F. Pellicciotti, P. Burlando, B. Brock, M. Funk, Journal of Geophysical Research: Atmospheres 109 (2004).
2004 | Journal Article | IST-REx-ID: 1456 |
Hodge cohomology of gravitational instantons
T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004) 485–548.
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T. Hausel, E. Hunsicker, R. Mazzeo, Duke Mathematical Journal 122 (2004) 485–548.
2004 | Journal Article | IST-REx-ID: 1464 |
Generators for the cohomology ring of the moduli space of rank 2 higgs bundles
T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88 (2004) 632–658.
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T. Hausel, M. Thaddeus, Proceedings of the London Mathematical Society 88 (2004) 632–658.
2004 | Journal Article | IST-REx-ID: 1963
Substrate-induced conformational change in bacterial complex I
A. Mamedova, P. Holt, J. Carroll, L.A. Sazanov, Journal of Biological Chemistry 279 (2004) 23830–23836.
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A. Mamedova, P. Holt, J. Carroll, L.A. Sazanov, Journal of Biological Chemistry 279 (2004) 23830–23836.