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11107 Publications

2025 | Submitted | Preprint | IST-REx-ID: 19762 |

Cárdenas, Adrián, Irem Çelik, Alexandre Espinós, Carmen Streicher, Lara López-González, Lucia del-Valle-Anton, Virginia Fernández, et al. “Early Indirect Neurogenesis Transitions to Late Direct Neurogenesis in Mouse Cerebral Cortex Development.” BioRxiv, n.d. https://doi.org/10.1101/2025.05.22.655488.

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Mombarg, J. S.G., V. Vanlaer, Srijan B Das, M. Rieutord, C. Aerts, Lisa Annabelle Bugnet, S. Mathis, D. R. Reese, and J. Ballot. “Is a 1D Perturbative Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators? Implications for Measurements of Rotation and Internal Magnetic Fields.” Astronomy and Astrophysics. EDP Sciences, 2025. https://doi.org/10.1051/0004-6361/202557247.

[Published Version] View | Files available | DOI | arXiv

Liu, Y., Sara Mascia, L. Pentericci, P. Watson, A. Alavi, P. Bergamini, M. Bradač, et al. “A Lyman Continuum Analysis of ∼100 Galaxies at z Spec∼ 3 in the Abell 2744 Cluster Field.” Astronomy and Astrophysics. EDP Sciences, 2025. https://doi.org/10.1051/0004-6361/202556410.

[Published Version] View | Files available | DOI | arXiv

Kelley R, Khavnekar S, Righetto RD, Heebner J, Obr M, Zhang X, Chakraborty S, Tagiltsev G, Michael AK, Van Dorst S, Waltz F, Mccafferty CL, Lamm L, Zufferey S, Van Der Stappen P, Van Den Hoek H, Wietrzynski W, Harar P, Wan W, Briggs JAG, Plitzko JM, Engel BD, Kotecha A. Toward community-driven visual proteomics with large-scale cryo-electron tomography of Chlamydomonas reinhardtii. Molecular Cell.

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2025 | Research Data Reference | IST-REx-ID: 20936 |

Mombarg, Joey, Vincent Vanlaer, Srijan B Das, Michel Rieutord, Conny Aerts, Lisa Annabelle Bugnet, Stephane Mathis, Daniel Reese, and Jerome Ballot. “Is a 1D Perturbative Method Sufficient for Asteroseismic Modelling of β Cephei Pulsators?” Zenodo, 2025. https://doi.org/10.5281/ZENODO.17580178.

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)

Gragera-Más, J. L., Santiago Torres Rodriguez, A. J. Mustill, and E. Villaver. “A Kinematic History of Stellar Encounters with Beta Pictoris.” Astronomy and Astrophysics. EDP Sciences, 2025. https://doi.org/10.1051/0004-6361/202555940.

[Published Version] View | Files available | DOI | arXiv

Artan, Murat, Hanna Schön, and Mario de Bono. “Proximity Labeling of DAF-16 FOXO Highlights Aging Regulatory Proteins.” Nature Communications. Springer Nature, 2025. https://doi.org/10.1038/s41467-025-66409-0.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

2025 | Published | Journal Article | IST-REx-ID: 20927 |

Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni, John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh. “Cavity Based Sensing of Antiferromagnetic Canting and Nonzero-Momentum Spin Waves in a van Der Waals Cavity-Magnon-Polariton System.” Physical Review B. American Physical Society, 2025. https://doi.org/10.1103/bdd1-b8ys.

[Preprint] View | Files available | DOI | Download Preprint (ext.) | arXiv

Montagna, Francesco, Maximilian T Cairney-Leeming, Dhanya Sridhar, and Francesco Locatello. “Demystifying Amortized Causal Discovery with Transformers.” Transactions on Machine Learning Research. ML Research Press, 2025.

[Published Version] View | Files available | arXiv

Meteling, Henning Jörn, Julius Gemen, Satu Häkkinen, Rafal Klajn, and Arri Priimagi. “Sensitized Disequilibration of Water-Soluble Azopolymers.” Angewandte Chemie International Edition. Wiley, 2025. https://doi.org/10.1002/anie.202523447.

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Erdös, László, Sven Joscha Henheik, and Cornelia Vogel. “Normal Typicality and Dynamical Typicality for a Random Block-Band Matrix Model.” Letters in Mathematical Physics. Springer Nature, 2025. https://doi.org/10.1007/s11005-025-02037-5.

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Kobayashi, Wataru, Alicia K. Michael, Siwat Ruangroengkulrith, Maximilian Kümmecke, and Kikuë Tachibana. “Protocol for Integrative Analysis of Transcription Factor-Nucleosome Interactions Using SeEN-Seq and Cryo-EM Structure Determination.” STAR Protocols. Elsevier, 2025. https://doi.org/10.1016/j.xpro.2025.104295.

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2025 | Published | Journal Article | IST-REx-ID: 20928

Khatoon, Bushra, Vikas K. Chaudhary, Shoaib Kamil, Shabih Ul Hasan, and M. Siraj Alam. “Enhanced Mass Transfer in Microgeometry Using Pulsating Velocity Inputs: Hydrodynamic Analysis and Numerical Simulation.” Physics of Fluids. AIP Publishing, 2025. https://doi.org/10.1063/5.0303132.

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2025 | Research Data Reference | IST-REx-ID: 20940 |

Mandal, Supriya, Krishnendu Maji, Lucky Kapoor, Souvik Sasmal, Soham Manni, John Jesudasan, Pratap Raychaudhuri, Arumugam Thamizhavel, and Mandar M. Deshmukh. “Mode Dispersion with Magnetic Field in a Cavity-Magnonics System.” Zenodo, 2025. https://doi.org/10.5281/ZENODO.15321721.

[Submitted Version] View | Files available | DOI | Download Submitted Version (ext.)

2025 | Published | Journal Article | IST-REx-ID: 20868

Liang C, Yuan J, Zhang R, Tang X, Schumann G, Hitchen E, Polemiti E, Serin E, Kebir H, Lett TA, Vaidya N, Roy J-C, Walter H, Heinz A, Ralser M, Twardziok S, Eils R, Jentsch M, Taron U-H, Schütz T, Schepanski K, Banaschewski T, Neidhart M, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Christmann N, Janson K, Nees F, Neidhart M, Seefried B, Aden R, Andreassen OA, Westlye LT, van der Meer D, Fernández-Cabello S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger SJ, Marquand A, Bernas A, Novarino G, Slater M, Gallego J, Pastor Á, Feixas G, Eiroa-Orosa FJ, Nöthen MM, Forstner AJ, Claus I, Mathey C, Heilmann-Heimbach S, Hoffmann P, Miller A, Sommer P, Schmitt K, Wilbertz J, Patraskaki M, Jirsa V, Petkoski S, Athanasiadis A-P, Spanlang B, Pearmund C, Hese S, Renner P, Jia T, Chang X, Dai Y, Xia Y, Li Y, Zhang Y, Calhoun V, Thompson P, Clinton N, Desrivières S, Agunbiade K, Yu X, Zhang Z, Chen D, Young AH, Schwalber A, Köhler V, Stahl B, Ogoh G, Schikowski T, Brandlistuen R. 2025. Projecting the morbidity burden of mental and behavioral disorders associated with increasing humid heat in Shanghai. Nature Mental Health. 3(12), 1532–1544.

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2025 | Published | Journal Article | IST-REx-ID: 20101 |

Baier, Felix, Katja Reinhard, Bram Nuttin, Arnau Sans-Dublanc, Chen Liu, Victoria Tong, Julie Stefanie Murmann, Keimpe Wierda, Karl Farrow, and Hopi E. Hoekstra. “The Neural Basis of Species-Specific Defensive Behaviour in Peromyscus Mice.” Nature. Springer Nature, 2025. https://doi.org/10.1038/s41586-025-09241-2.

[Published Version] View | Files available | DOI | PubMed | Europe PMC

Zava, Nicolò. “Coarse and Bi-Lipschitz Embeddability of Subspaces of the Gromov–Hausdorff Space into Hilbert Spaces.” Algebraic & Geometric Topology. Mathematical Sciences Publishers, 2025. https://doi.org/10.2140/agt.2025.25.5153.

[Published Version] View | Files available | DOI | arXiv

2025 | Published | Journal Article | IST-REx-ID: 20926 |

Kim, Dongjin, Xiaoyu Wang, Santiago Vargas, Peichen Zhong, Daniel S. King, Theo Jaffrelot Inizan, and Bingqing Cheng. “A Universal Augmentation Framework for Long-Range Electrostatics in Machine Learning Interatomic Potentials.” Journal of Chemical Theory and Computation. American Chemical Society, 2025. https://doi.org/10.1021/acs.jctc.5c01400.

2025 | Published | Journal Article | IST-REx-ID: 20869

Fuster‐Calvo, Alexandre, Coline C. Jaworski, Thomas Ellis, and Carina Baskett. “Reduced Fitness under Drought Stress in F1 Hybrids of Antirrhinum Majus Varieties with Divergent Flower Colors.” American Journal of Botany. Wiley, 2025. https://doi.org/10.1002/ajb2.70129.

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2025 | Published | Book Chapter | IST-REx-ID: 20870

Stopa, Victoria, Miron Sopić, Guanliang Li, Judith Sluimer, José Basílio, Sander W. van der Laan, David P. Kreil, Yvan Devaux, and Bernhard Hochreiter. “Essentials of Transcriptomic Methods: Navigating through RNA Sequencing and Beyond.” In Transcriptomics in Atherosclerosis, edited by Yvan Devaux and Miron Sopic, 131–72. Elsevier, 2025. https://doi.org/10.1016/b978-0-443-33064-3.00016-5.

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