Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).
We recommend upgrading to the latest Internet Explorer, Google Chrome, or Firefox.
207 Publications
2026 |
Published |
Journal Article |
IST-REx-ID: 21983 |
| 
|
Mascolo E, Körei RE, Herrera-Álvarez S, Guet CC, Crocker J, Tkačik G. Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps. Current Opinion in Genetics & Development. 2026;99. doi:10.1016/j.gde.2026.102483
[Published Version]
View
| DOI
| Download Published Version (ext.)
| arXiv
2026 |
Published |
Journal Article |
IST-REx-ID: 21282 |
|
|
Brückner D, Tkačik G. Marr’s three levels for embryonic development: Information, dynamical systems, gene networks. PRX Life. 2026;4. doi:10.1103/fdcf-dkws
[Published Version]
View
| Files available
| DOI
| arXiv
2026 |
Published |
Journal Article |
IST-REx-ID: 22326 |
|
|
Zhang CY, Mateu Hoyos P, Brückner D, Tkačik G. Nonlocal decoding of positional and correlational information during development. Physical Review Letters. 2026;137. doi:10.1103/mbjk-v4ym
[Published Version]
View
| Files available
| DOI
2026 |
Published |
Journal Article |
IST-REx-ID: 21759 |
|
|
Mascolo E, Körei RE, Borst NO, Barton NH, Crocker J, Tkačik G. Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges. Current Opinion in Genetics and Development. 2026;98. doi:10.1016/j.gde.2026.102472
[Published Version]
View
| Files available
| DOI
2026 |
Published |
Thesis | MS |
IST-REx-ID: 22399 |
Spasić A. Studying the evolutionary systems biology of the lac operon. 2026. doi:10.15479/AT-ISTA-22399
[Published Version]
View
| Files available
| DOI
2026 |
Published |
Journal Article |
IST-REx-ID: 22363 |
Zoller B, Benichou A, Gregor T, Tkačik G. Invariant nonequilibrium dynamics in gene regulation optimize information flow. Proceedings of the National Academy of Sciences of the United States of America. 2026;123(28). doi:10.1073/pnas.2524855123
[Published Version]
View
| Files available
| DOI
| PubMed | Europe PMC
2025 |
Published |
Journal Article |
IST-REx-ID: 21269 |
|
|
Zhang CY, Rosa A, Sanguinetti G. bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction. PRX Life. 2025;3(4). doi:10.1103/gy1p-4256
[Published Version]
View
| Files available
| DOI
| arXiv
2025 |
Published |
Journal Article |
IST-REx-ID: 18849 |
Sokolowski TR, Gregor T, Bialek W, Tkačik G. Deriving a genetic regulatory network from an optimization principle. Proceedings of the National Academy of Sciences. 2025;122(1). doi:10.1073/pnas.2402925121
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2025 |
Published |
Journal Article |
IST-REx-ID: 18850 |
Perkins ML, Crocker J, Tkačik G. Chromatin enables precise and scalable gene regulation with factors of limited specificity. Proceedings of the National Academy of Sciences. 2025;122(1). doi:10.1073/pnas.2411887121
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2025 |
Published |
Journal Article |
IST-REx-ID: 18936 |
Grah R, Guet CC, Tkačik G, Lagator M. Linking molecular mechanisms to their evolutionary consequences: a primer. Genetics. 2025;229(2). doi:10.1093/genetics/iyae191
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2025 |
Research Data |
IST-REx-ID: 18991 |
Chiossi HSC. Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” 2025. doi:10.15479/AT:ISTA:18991
[Published Version]
View
| Files available
| DOI
2025 |
Research Data |
IST-REx-ID: 19294 |
Jain K, Hauschild R, Bochkareva O, Römhild R, Tkačik G, Guet CC. Data for “Pulsatile basal gene expression as a fitness determinant in bacteria.” 2025. doi:10.15479/AT:ISTA:19294
[Published Version]
View
| Files available
| DOI
2025 |
Published |
Journal Article |
IST-REx-ID: 19453 |
Chiossi HSC, Nardin M, Tkačik G, Csicsvari JL. Learning reshapes the hippocampal representation hierarchy. Proceedings of the National Academy of Sciences. 2025;122(11). doi:10.1073/pnas.2417025122
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2025 |
Published |
Journal Article |
IST-REx-ID: 19626 |
Jain K, Hauschild R, Bochkareva O, Römhild R, Tkačik G, Guet CC. Pulsatile basal gene expression as a fitness determinant in bacteria. Proceedings of the National Academy of Sciences. 2025;122(15). doi:10.1073/pnas.2413709122
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2025 |
Research Data |
IST-REx-ID: 19658 |
Tkačik G. Token-driven totally asymmetric simple exclusion processes. 2025. doi:10.15479/AT:ISTA:19658
[Published Version]
View
| Files available
| DOI
2025 |
Published |
Journal Article |
IST-REx-ID: 19701 |
Tkačik G, Wolde PRT. Information processing in biochemical networks. Annual review of biophysics. 2025;54:249-274. doi:10.1146/annurev-biophys-060524-102720
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
2025 |
Published |
Journal Article |
IST-REx-ID: 20664 |
|
|
Kapoor L, Ruzickova N, Zivadinovic P, et al. Quantifying the carbon footprint of conference travel: The case of NMR meetings. Magnetic Resonance. 2025;6(2):243-256. doi:10.5194/mr-6-243-2025
[Published Version]
View
| Files available
| DOI
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20811 |
Rella S. Adaptive processes in biology and culture: Models of evolving vaccine resistance and the record statistics of innovation. 2025. doi:10.15479/AT-ISTA-20811
[Published Version]
View
| Files available
| DOI
2025 |
Published |
Journal Article |
IST-REx-ID: 19785 |
Kavcic B, Tkačik G. Token-driven totally asymmetric simple exclusion processes. Physical Review E. 2025;111(5). doi:10.1103/physreve.111.054122
[Published Version]
View
| Files available
| DOI
| WoS
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20357
Ruzickova N. Effect propagation in biological networks. 2025. doi:10.15479/AT-ISTA-20357
[Published Version]
View
| Files available
| DOI