ISTA Research Explorer

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Gasper Tkacik

Sofia Backlund

Alexis Benichou

Céline Camila Coraly Bräutigam

Pietro Chiarantoni

Athina Diakogianni

Krishnan Iyer

Reka Borbely

Björn Kscheschinski

Teemu Kuosmanen

Gabor Lengyel

Ekaterina Maksimova

Elia Mascolo

Pablo Mateu Hoyos

Anuj Patel

Tetiana Rabiichuk

Simon Rella

Julian Renaud

Puzhen Xia

Bahti Zakirov

Alex Chen Yi Zhang

Tereza Zuskinova

Gabriel Mitchell

Anna Andersson

Katarina Bodova

Vicent Botella Soler

David Brückner

Sarah Cepeda Humerez

Remy Chait

Matthew Chalk

Heloisa Chiossi

Daniele De Martino

Tamar Friedlander

Mantas Gabrielaitis

Aditya Gilra

Rok Grah

Michal Hledik

Jan Humplik

Bor Kavcic

Moritz Lang

Anna Levina (Martius)

Fabrizio Lombardi

Georg Martius

Roshan Prizak

Georg Rieckh

Jakob Ruess

Natalia Ruzickova

Cristina Savin

Sreyam Sengupta

Thomas Sokolowski

207 Publications

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Mascolo, E., Körei, R. E., Herrera-Álvarez, S., Guet, C. C., Crocker, J., & Tkačik, G. (2026). Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps. Current Opinion in Genetics & Development. Elsevier. https://doi.org/10.1016/j.gde.2026.102483

[Published Version] View | DOI | Download Published Version (ext.) | arXiv

Brückner, D., & Tkačik, G. (2026). Marr’s three levels for embryonic development: Information, dynamical systems, gene networks. PRX Life. American Physical Society. https://doi.org/10.1103/fdcf-dkws

[Published Version] View | Files available | DOI | arXiv

Zhang, C. Y., Mateu Hoyos, P., Brückner, D., & Tkačik, G. (2026). Nonlocal decoding of positional and correlational information during development. Physical Review Letters. American Physical Society. https://doi.org/10.1103/mbjk-v4ym

[Published Version] View | Files available | DOI

Mascolo, E., Körei, R. E., Borst, N. O., Barton, N. H., Crocker, J., & Tkačik, G. (2026). Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges. Current Opinion in Genetics and Development. Elsevier. https://doi.org/10.1016/j.gde.2026.102472

[Published Version] View | Files available | DOI

2026 | Published | Thesis | MS | IST-REx-ID: 22399 |

Spasić, A. (2026). Studying the evolutionary systems biology of the lac operon. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-22399

[Published Version] View | Files available | DOI

2026 | Published | Journal Article | IST-REx-ID: 22363 |

Zoller, B., Benichou, A., Gregor, T., & Tkačik, G. (2026). Invariant nonequilibrium dynamics in gene regulation optimize information flow. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2524855123

[Published Version] View | Files available | DOI | PubMed | Europe PMC

Zhang, C. Y., Rosa, A., & Sanguinetti, G. (2025). bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction. PRX Life. American Physical Society. https://doi.org/10.1103/gy1p-4256

[Published Version] View | Files available | DOI | arXiv

2025 | Published | Journal Article | IST-REx-ID: 18849 |

Sokolowski, T. R., Gregor, T., Bialek, W., & Tkačik, G. (2025). Deriving a genetic regulatory network from an optimization principle. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2402925121

2025 | Published | Journal Article | IST-REx-ID: 18850 |

Perkins, M. L., Crocker, J., & Tkačik, G. (2025). Chromatin enables precise and scalable gene regulation with factors of limited specificity. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2411887121

2025 | Published | Journal Article | IST-REx-ID: 18936 |

Grah, R., Guet, C. C., Tkačik, G., & Lagator, M. (2025). Linking molecular mechanisms to their evolutionary consequences: a primer. Genetics. Oxford University Press. https://doi.org/10.1093/genetics/iyae191

2025 | Research Data | IST-REx-ID: 18991 |

Chiossi, H. S. C. (2025). Research data for the publication “Learning reshapes the hippocampal representation hierarchy.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:18991

[Published Version] View | Files available | DOI

2025 | Research Data | IST-REx-ID: 19294 |

Jain, K., Hauschild, R., Bochkareva, O., Römhild, R., Tkačik, G., & Guet, C. C. (2025). Data for “Pulsatile basal gene expression as a fitness determinant in bacteria.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:19294

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19453 |

Chiossi, H. S. C., Nardin, M., Tkačik, G., & Csicsvari, J. L. (2025). Learning reshapes the hippocampal representation hierarchy. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2417025122

2025 | Published | Journal Article | IST-REx-ID: 19626 |

Jain, K., Hauschild, R., Bochkareva, O., Römhild, R., Tkačik, G., & Guet, C. C. (2025). Pulsatile basal gene expression as a fitness determinant in bacteria. Proceedings of the National Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.2413709122

2025 | Research Data | IST-REx-ID: 19658 |

Tkačik, G. (2025). Token-driven totally asymmetric simple exclusion processes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:19658

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19701 |

Tkačik, G., & Wolde, P. R. T. (2025). Information processing in biochemical networks. Annual Review of Biophysics. Annual Reviews. https://doi.org/10.1146/annurev-biophys-060524-102720

Kapoor, L., Ruzickova, N., Zivadinovic, P., Leitner, V., Sisak, M. A., Mweka, C. N., … Schanda, P. (2025). Quantifying the carbon footprint of conference travel: The case of NMR meetings. Magnetic Resonance. Copernicus Publications. https://doi.org/10.5194/mr-6-243-2025

[Published Version] View | Files available | DOI

2025 | Published | Thesis | PhD | IST-REx-ID: 20811 |

Rella, S. (2025). Adaptive processes in biology and culture: Models of evolving vaccine resistance and the record statistics of innovation. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-20811

[Published Version] View | Files available | DOI

2025 | Published | Journal Article | IST-REx-ID: 19785 |

Kavcic, B., & Tkačik, G. (2025). Token-driven totally asymmetric simple exclusion processes. Physical Review E. American Physical Society. https://doi.org/10.1103/physreve.111.054122

[Published Version] View | Files available | DOI | WoS

2025 | Published | Thesis | PhD | IST-REx-ID: 20357

Ruzickova, N. (2025). Effect propagation in biological networks. Institute of Science and Technology Austria. https://doi.org/10.15479/AT-ISTA-20357

[Published Version] View | Files available | DOI

Tkacik Group

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207 Publications

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Tkacik Group

Please note that LibreCat no longer supports Internet Explorer versions 8 or 9 (or earlier).

Alumni

207 Publications

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Filter Publications

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