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207 Publications
2026 |
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Journal Article |
IST-REx-ID: 21983 |
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E. Mascolo, R. E. Körei, S. Herrera-Álvarez, C. C. Guet, J. Crocker, and G. Tkačik, “Long-term evolution of regulatory DNA sequences. Part 1: Simulations on global, biophysically-realistic genotype–phenotype maps,” Current Opinion in Genetics & Development, vol. 99. Elsevier, 2026.
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| arXiv
2026 |
Published |
Journal Article |
IST-REx-ID: 21282 |
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D. Brückner and G. Tkačik, “Marr’s three levels for embryonic development: Information, dynamical systems, gene networks,” PRX Life, vol. 4. American Physical Society, 2026.
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| arXiv
2026 |
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Journal Article |
IST-REx-ID: 22326 |
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C. Y. Zhang, P. Mateu Hoyos, D. Brückner, and G. Tkačik, “Nonlocal decoding of positional and correlational information during development,” Physical Review Letters, vol. 137. American Physical Society, 2026.
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2026 |
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Journal Article |
IST-REx-ID: 21759 |
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E. Mascolo, R. E. Körei, N. O. Borst, N. H. Barton, J. Crocker, and G. Tkačik, “Long-term evolution of regulatory DNA sequences. Part 2: Theory and future challenges,” Current Opinion in Genetics and Development, vol. 98. Elsevier, 2026.
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2026 |
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Thesis | MS |
IST-REx-ID: 22399 |
A. Spasić, “Studying the evolutionary systems biology of the lac operon,” Institute of Science and Technology Austria, 2026.
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2026 |
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Journal Article |
IST-REx-ID: 22363 |
B. Zoller, A. Benichou, T. Gregor, and G. Tkačik, “Invariant nonequilibrium dynamics in gene regulation optimize information flow,” Proceedings of the National Academy of Sciences of the United States of America, vol. 123, no. 28. National Academy of Sciences, 2026.
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| PubMed | Europe PMC
2025 |
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Journal Article |
IST-REx-ID: 21269 |
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C. Y. Zhang, A. Rosa, and G. Sanguinetti, “bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction,” PRX Life, vol. 3, no. 4. American Physical Society, 2025.
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| arXiv
2025 |
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Journal Article |
IST-REx-ID: 18849 |
T. R. Sokolowski, T. Gregor, W. Bialek, and G. Tkačik, “Deriving a genetic regulatory network from an optimization principle,” Proceedings of the National Academy of Sciences, vol. 122, no. 1. National Academy of Sciences, 2025.
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| PubMed | Europe PMC
2025 |
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Journal Article |
IST-REx-ID: 18850 |
M. L. Perkins, J. Crocker, and G. Tkačik, “Chromatin enables precise and scalable gene regulation with factors of limited specificity,” Proceedings of the National Academy of Sciences, vol. 122, no. 1. National Academy of Sciences, 2025.
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2025 |
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Journal Article |
IST-REx-ID: 18936 |
R. Grah, C. C. Guet, G. Tkačik, and M. Lagator, “Linking molecular mechanisms to their evolutionary consequences: a primer,” Genetics, vol. 229, no. 2. Oxford University Press, 2025.
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2025 |
Research Data |
IST-REx-ID: 18991 |
H. S. C. Chiossi, “Research data for the publication ‘Learning reshapes the hippocampal representation hierarchy.’” Institute of Science and Technology Austria, 2025.
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2025 |
Research Data |
IST-REx-ID: 19294 |
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, and C. C. Guet, “Data for ‘Pulsatile basal gene expression as a fitness determinant in bacteria.’” Institute of Science and Technology Austria, 2025.
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2025 |
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Journal Article |
IST-REx-ID: 19453 |
H. S. C. Chiossi, M. Nardin, G. Tkačik, and J. L. Csicsvari, “Learning reshapes the hippocampal representation hierarchy,” Proceedings of the National Academy of Sciences, vol. 122, no. 11. National Academy of Sciences, 2025.
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2025 |
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Journal Article |
IST-REx-ID: 19626 |
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, and C. C. Guet, “Pulsatile basal gene expression as a fitness determinant in bacteria,” Proceedings of the National Academy of Sciences, vol. 122, no. 15. National Academy of Sciences, 2025.
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2025 |
Research Data |
IST-REx-ID: 19658 |
G. Tkačik, “Token-driven totally asymmetric simple exclusion processes.” Institute of Science and Technology Austria, 2025.
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2025 |
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Journal Article |
IST-REx-ID: 19701 |
G. Tkačik and P. R. T. Wolde, “Information processing in biochemical networks,” Annual review of biophysics, vol. 54. Annual Reviews, pp. 249–274, 2025.
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| PubMed | Europe PMC
2025 |
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Journal Article |
IST-REx-ID: 20664 |
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L. Kapoor et al., “Quantifying the carbon footprint of conference travel: The case of NMR meetings,” Magnetic Resonance, vol. 6, no. 2. Copernicus Publications, pp. 243–256, 2025.
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2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20811 |
S. Rella, “Adaptive processes in biology and culture: Models of evolving vaccine resistance and the record statistics of innovation,” Institute of Science and Technology Austria, 2025.
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2025 |
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Journal Article |
IST-REx-ID: 19785 |
B. Kavcic and G. Tkačik, “Token-driven totally asymmetric simple exclusion processes,” Physical Review E, vol. 111, no. 5. American Physical Society, 2025.
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2025 |
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Thesis | PhD |
IST-REx-ID: 20357
N. Ruzickova, “Effect propagation in biological networks,” Institute of Science and Technology Austria, 2025.
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