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207 Publications
2026 |
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Journal Article |
IST-REx-ID: 21983 |
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Mascolo, Elia, et al. “Long-Term Evolution of Regulatory DNA Sequences. Part 1: Simulations on Global, Biophysically-Realistic Genotype–Phenotype Maps.” Current Opinion in Genetics & Development, vol. 99, 102483, Elsevier, 2026, doi:10.1016/j.gde.2026.102483.
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| arXiv
2026 |
Published |
Journal Article |
IST-REx-ID: 21282 |
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Brückner, David, and Gašper Tkačik. “Marr’s Three Levels for Embryonic Development: Information, Dynamical Systems, Gene Networks.” PRX Life, vol. 4, 017001, American Physical Society, 2026, doi:10.1103/fdcf-dkws.
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| arXiv
2026 |
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Journal Article |
IST-REx-ID: 22326 |
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Zhang, Chen Y., et al. “Nonlocal Decoding of Positional and Correlational Information during Development.” Physical Review Letters, vol. 137, 038401, American Physical Society, 2026, doi:10.1103/mbjk-v4ym.
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2026 |
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Journal Article |
IST-REx-ID: 21759 |
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Mascolo, Elia, et al. “Long-Term Evolution of Regulatory DNA Sequences. Part 2: Theory and Future Challenges.” Current Opinion in Genetics and Development, vol. 98, 102472, Elsevier, 2026, doi:10.1016/j.gde.2026.102472.
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2026 |
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Thesis | MS |
IST-REx-ID: 22399 |
Spasić, Aleksa. Studying the Evolutionary Systems Biology of the Lac Operon. Institute of Science and Technology Austria, 2026, doi:10.15479/AT-ISTA-22399.
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2026 |
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Journal Article |
IST-REx-ID: 22363 |
Zoller, Benjamin, et al. “Invariant Nonequilibrium Dynamics in Gene Regulation Optimize Information Flow.” Proceedings of the National Academy of Sciences of the United States of America, vol. 123, no. 28, e2524855123, National Academy of Sciences, 2026, doi:10.1073/pnas.2524855123.
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| PubMed | Europe PMC
2025 |
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Journal Article |
IST-REx-ID: 21269 |
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Zhang, Chen Y., et al. “BioSBM: A Random Graph Model to Integrate Epigenomic Data in Chromatin Structure Prediction.” PRX Life, vol. 3, no. 4, 043006, American Physical Society, 2025, doi:10.1103/gy1p-4256.
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| arXiv
2025 |
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Journal Article |
IST-REx-ID: 18849 |
Sokolowski, Thomas R., et al. “Deriving a Genetic Regulatory Network from an Optimization Principle.” Proceedings of the National Academy of Sciences, vol. 122, no. 1, e2402925121, National Academy of Sciences, 2025, doi:10.1073/pnas.2402925121.
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| PubMed | Europe PMC
2025 |
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Journal Article |
IST-REx-ID: 18850 |
Perkins, Mindy Liu, et al. “Chromatin Enables Precise and Scalable Gene Regulation with Factors of Limited Specificity.” Proceedings of the National Academy of Sciences, vol. 122, no. 1, e2411887121, National Academy of Sciences, 2025, doi:10.1073/pnas.2411887121.
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2025 |
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Journal Article |
IST-REx-ID: 18936 |
Grah, Rok, et al. “Linking Molecular Mechanisms to Their Evolutionary Consequences: A Primer.” Genetics, vol. 229, no. 2, iyae191, Oxford University Press, 2025, doi:10.1093/genetics/iyae191.
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2025 |
Research Data |
IST-REx-ID: 18991 |
Chiossi, Heloisa S. C. Research Data for the Publication “Learning Reshapes the Hippocampal Representation Hierarchy.” Institute of Science and Technology Austria, 2025, doi:10.15479/AT:ISTA:18991.
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2025 |
Research Data |
IST-REx-ID: 19294 |
Jain, Kirti, et al. Data for “Pulsatile Basal Gene Expression as a Fitness Determinant in Bacteria.” Institute of Science and Technology Austria, 2025, doi:10.15479/AT:ISTA:19294.
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2025 |
Published |
Journal Article |
IST-REx-ID: 19453 |
Chiossi, Heloisa S. C., et al. “Learning Reshapes the Hippocampal Representation Hierarchy.” Proceedings of the National Academy of Sciences, vol. 122, no. 11, e2417025122, National Academy of Sciences, 2025, doi:10.1073/pnas.2417025122.
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2025 |
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Journal Article |
IST-REx-ID: 19626 |
Jain, Kirti, et al. “Pulsatile Basal Gene Expression as a Fitness Determinant in Bacteria.” Proceedings of the National Academy of Sciences, vol. 122, no. 15, e2413709122, National Academy of Sciences, 2025, doi:10.1073/pnas.2413709122.
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2025 |
Research Data |
IST-REx-ID: 19658 |
Tkačik, Gašper. Token-Driven Totally Asymmetric Simple Exclusion Processes. Institute of Science and Technology Austria, 2025, doi:10.15479/AT:ISTA:19658.
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2025 |
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Journal Article |
IST-REx-ID: 19701 |
Tkačik, Gašper, and Pieter Rein Ten Wolde. “Information Processing in Biochemical Networks.” Annual Review of Biophysics, vol. 54, Annual Reviews, 2025, pp. 249–74, doi:10.1146/annurev-biophys-060524-102720.
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2025 |
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Journal Article |
IST-REx-ID: 20664 |
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Kapoor, Lucky, et al. “Quantifying the Carbon Footprint of Conference Travel: The Case of NMR Meetings.” Magnetic Resonance, vol. 6, no. 2, Copernicus Publications, 2025, pp. 243–56, doi:10.5194/mr-6-243-2025.
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2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20811 |
Rella, Simon. Adaptive Processes in Biology and Culture: Models of Evolving Vaccine Resistance and the Record Statistics of Innovation. Institute of Science and Technology Austria, 2025, doi:10.15479/AT-ISTA-20811.
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2025 |
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Journal Article |
IST-REx-ID: 19785 |
Kavcic, Bor, and Gašper Tkačik. “Token-Driven Totally Asymmetric Simple Exclusion Processes.” Physical Review E, vol. 111, no. 5, 054122, American Physical Society, 2025, doi:10.1103/physreve.111.054122.
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2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20357
Ruzickova, Natalia. Effect Propagation in Biological Networks. Institute of Science and Technology Austria, 2025, doi:10.15479/AT-ISTA-20357.
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