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202 Publications
2026 |
Published |
Journal Article |
IST-REx-ID: 21282 |
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Marr's three levels for embryonic development: Information, dynamical systems, gene networks
D. Brückner, G. Tkačik, PRX Life 4 (2026).
[Published Version]
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| Files available
| DOI
| arXiv
D. Brückner, G. Tkačik, PRX Life 4 (2026).
2025 |
Published |
Journal Article |
IST-REx-ID: 19785 |
Token-driven totally asymmetric simple exclusion processes
B. Kavcic, G. Tkačik, Physical Review E 111 (2025).
[Published Version]
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| Files available
| DOI
| WoS
B. Kavcic, G. Tkačik, Physical Review E 111 (2025).
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20357
Effect propagation in biological networks
N. Ruzickova, Effect Propagation in Biological Networks, Institute of Science and Technology Austria, 2025.
[Published Version]
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| DOI
N. Ruzickova, Effect Propagation in Biological Networks, Institute of Science and Technology Austria, 2025.
2025 |
Published |
Journal Article |
IST-REx-ID: 20664 |
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Quantifying the carbon footprint of conference travel: The case of NMR meetings
L. Kapoor, N. Ruzickova, P. Zivadinovic, V. Leitner, M.A. Sisak, C.N. Mweka, J.A. Dobbelaere, G. Katsaros, P. Schanda, Magnetic Resonance 6 (2025) 243–256.
[Published Version]
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L. Kapoor, N. Ruzickova, P. Zivadinovic, V. Leitner, M.A. Sisak, C.N. Mweka, J.A. Dobbelaere, G. Katsaros, P. Schanda, Magnetic Resonance 6 (2025) 243–256.
2025 |
Published |
Thesis | PhD |
IST-REx-ID: 20811 |
Adaptive processes in biology and culture : Models of evolving vaccine resistance and the record statistics of innovation
S. Rella, Adaptive Processes in Biology and Culture : Models of Evolving Vaccine Resistance and the Record Statistics of Innovation, Institute of Science and Technology Austria, 2025.
[Published Version]
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S. Rella, Adaptive Processes in Biology and Culture : Models of Evolving Vaccine Resistance and the Record Statistics of Innovation, Institute of Science and Technology Austria, 2025.
2025 |
Published |
Journal Article |
IST-REx-ID: 18849 |
Deriving a genetic regulatory network from an optimization principle
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).
[Published Version]
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| PubMed | Europe PMC
T.R. Sokolowski, T. Gregor, W. Bialek, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 18850 |
Chromatin enables precise and scalable gene regulation with factors of limited specificity
M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).
[Published Version]
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| DOI
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| PubMed | Europe PMC
M.L. Perkins, J. Crocker, G. Tkačik, Proceedings of the National Academy of Sciences 122 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 18936 |
Linking molecular mechanisms to their evolutionary consequences: a primer
R. Grah, C.C. Guet, G. Tkačik, M. Lagator, Genetics 229 (2025).
[Published Version]
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| PubMed | Europe PMC
R. Grah, C.C. Guet, G. Tkačik, M. Lagator, Genetics 229 (2025).
2025 |
Research Data |
IST-REx-ID: 18991 |
Research data for the publication "Learning reshapes the hippocampal representation hierarchy"
H.S.C. Chiossi, (2025).
[Published Version]
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| DOI
H.S.C. Chiossi, (2025).
2025 |
Research Data |
IST-REx-ID: 19294 |
Data for "Pulsatile basal gene expression as a fitness determinant in bacteria"
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).
[Published Version]
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| Files available
| DOI
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 19453 |
Learning reshapes the hippocampal representation hierarchy
H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
[Published Version]
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| PubMed | Europe PMC
H.S.C. Chiossi, M. Nardin, G. Tkačik, J.L. Csicsvari, Proceedings of the National Academy of Sciences 122 (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 19626 |
Pulsatile basal gene expression as a fitness determinant in bacteria
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, Proceedings of the National Academy of Sciences 122 (2025).
[Published Version]
View
| Files available
| DOI
| WoS
| PubMed | Europe PMC
K. Jain, R. Hauschild, O. Bochkareva, R. Römhild, G. Tkačik, C.C. Guet, Proceedings of the National Academy of Sciences 122 (2025).
2025 |
Research Data |
IST-REx-ID: 19658 |
Token-driven totally asymmetric simple exclusion processes
G. Tkačik, (2025).
[Published Version]
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| Files available
| DOI
G. Tkačik, (2025).
2025 |
Published |
Journal Article |
IST-REx-ID: 19701 |
Information processing in biochemical networks
G. Tkačik, P.R.T. Wolde, Annual Review of Biophysics 54 (2025) 249–274.
[Published Version]
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| WoS
| PubMed | Europe PMC
G. Tkačik, P.R.T. Wolde, Annual Review of Biophysics 54 (2025) 249–274.
2025 |
Published |
Journal Article |
IST-REx-ID: 21269 |
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bioSBM: A random graph model to integrate epigenomic data in chromatin structure prediction
C.Y. Zhang, A. Rosa, G. Sanguinetti, PRX Life 3 (2025).
[Published Version]
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| Files available
| DOI
| arXiv
C.Y. Zhang, A. Rosa, G. Sanguinetti, PRX Life 3 (2025).
2024 |
Published |
Journal Article |
IST-REx-ID: 18307 |
Complex vaccination strategies prevent the emergence of vaccine resistance
S. Rella, Y.A. Kulikova, A. Minnegalieva, F. Kondrashov, Evolution: International Journal of Organic Evolution 78 (2024) 1722–1738.
[Published Version]
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| PubMed | Europe PMC
S. Rella, Y.A. Kulikova, A. Minnegalieva, F. Kondrashov, Evolution: International Journal of Organic Evolution 78 (2024) 1722–1738.
2024 |
Published |
Journal Article |
IST-REx-ID: 18525 |
Quantitative omnigenic model discovers interpretable genome-wide associations
N. Ruzickova, M. Hledik, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
[Published Version]
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| DOI
| WoS
| PubMed | Europe PMC
N. Ruzickova, M. Hledik, G. Tkačik, Proceedings of the National Academy of Sciences of the United States of America 121 (2024).
2024 |
Published |
Journal Article |
IST-REx-ID: 18902 |
Assessing the precision of morphogen gradients in neural tube development
M. Zagorski, N. Brandenberg, M. Lutolf, G. Tkačik, M.T. Bollenbach, J. Briscoe, A. Kicheva, Nature Communications 15 (2024).
[Published Version]
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| DOI
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| PubMed | Europe PMC
M. Zagorski, N. Brandenberg, M. Lutolf, G. Tkačik, M.T. Bollenbach, J. Briscoe, A. Kicheva, Nature Communications 15 (2024).
2024 |
Published |
Journal Article |
IST-REx-ID: 14901 |
Tipping points of space debris in low earth orbit
K. Nomura, S. Rella, H. Merritt, M. Baltussen, D. Bird, A. Tjuka, D. Falk, International Journal of the Commons 18 (2024).
[Published Version]
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| DOI
K. Nomura, S. Rella, H. Merritt, M. Baltussen, D. Bird, A. Tjuka, D. Falk, International Journal of the Commons 18 (2024).
2024 |
Published |
Thesis | PhD |
IST-REx-ID: 15020 |
Genetic information and biological optimization
M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.
[Published Version]
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| DOI
M. Hledik, Genetic Information and Biological Optimization, Institute of Science and Technology Austria, 2024.